| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028923 |
Definition |
Mycobacterium phage Llama, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
58472 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
111 |
%GC |
61.06 |
Number of singletons |
2 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009209608.1 | NC_028923_p59 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 40037 | 40720 |
| YP_009209591.1 | NC_028923_p42 | hypothetical protein | phrog_8497 | unknown function | unknown function | -1 | 31857 | 32036 |
| YP_009209659.1 | NC_028923_p110 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57380 | 58003 |
| YP_009209624.1 | NC_028923_p75 | DNA methylase | phrog_32758 | DNA methyltransferase | other | 1 | 46466 | 46870 |
| YP_009209612.1 | NC_028923_p63 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 41912 | 42397 |
| YP_009209627.1 | NC_028923_p78 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 47152 | 47523 |
| YP_009209636.1 | NC_028923_p87 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 49484 | 49627 |
| YP_009209652.1 | NC_028923_p103 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 54326 | 54487 |
| YP_009209623.1 | NC_028923_p74 | DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 46111 | 46482 |
| YP_009209631.1 | NC_028923_p82 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 48325 | 48519 |
| YP_009209582.1 | NC_028923_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28973 | 29347 |
| YP_009209592.1 | NC_028923_p43 | GIY-YIG endonuclease | phrog_16880 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32038 | 32565 |
| YP_009209595.1 | NC_028923_p46 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34514 | 34966 |
| YP_009209576.1 | NC_028923_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25951 | 26100 |
| YP_009209639.1 | NC_028923_p90 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 50154 | 50447 |
| YP_009209635.1 | NC_028923_p86 | hypothetical protein | phrog_16849 | unknown function | unknown function | 1 | 49338 | 49487 |
| YP_009209577.1 | NC_028923_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26097 | 26237 |
| YP_009209604.1 | NC_028923_p55 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38660 | 38857 |
| YP_009209606.1 | NC_028923_p57 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 39229 | 39417 |
| YP_009209641.1 | NC_028923_p92 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50653 | 50844 |
| YP_009209622.1 | NC_028923_p73 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 45965 | 46114 |
| YP_009209574.1 | NC_028923_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25312 | 25512 |
| YP_009209569.1 | NC_028923_p20 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 22051 | 23220 |
| YP_009209555.1 | NC_028923_p6 | major capsid | phrog_267 | major head protein | head and packaging | 1 | 5046 | 5867 |
| YP_009209585.1 | NC_028923_p36 | hypothetical protein | phrog_8186 | unknown function | unknown function | 1 | 30414 | 30500 |
| YP_009209650.1 | NC_028923_p101 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 53511 | 54182 |
| YP_009209626.1 | NC_028923_p77 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 47009 | 47164 |
| YP_009209633.1 | NC_028923_p84 | MPME2 protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48720 | 49091 |
| YP_009209554.1 | NC_028923_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4434 | 5027 |
| YP_009209638.1 | NC_028923_p89 | hypothetical protein | phrog_5831 | unknown function | unknown function | 1 | 49975 | 50157 |
| YP_009209625.1 | NC_028923_p76 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 46867 | 47028 |
| YP_009209607.1 | NC_028923_p58 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 39414 | 40001 |
| YP_009209642.1 | NC_028923_p93 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 50841 | 51242 |
| YP_009209645.1 | NC_028923_p96 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52074 | 52214 |
| YP_009209605.1 | NC_028923_p56 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 38897 | 39232 |
| YP_009209593.1 | NC_028923_p44 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32562 | 32756 |
| YP_009209550.1 | NC_028923_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009209579.1 | NC_028923_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26534 | 27727 |
| YP_009209660.1 | NC_028923_p111 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58003 | 58329 |
| YP_009209656.1 | NC_028923_p107 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 55335 | 55496 |
| YP_009209655.1 | NC_028923_p106 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55100 | 55342 |
| YP_009209620.1 | NC_028923_p71 | hypothetical protein | phrog_6938 | unknown function | unknown function | 1 | 45532 | 45867 |
| YP_009209575.1 | NC_028923_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25660 | 25944 |
| YP_009209588.1 | NC_028923_p39 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 31007 | 31198 |
| YP_009209571.1 | NC_028923_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23602 | 23856 |
| YP_009209573.1 | NC_028923_p24 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 24502 | 25308 |
| YP_009209657.1 | NC_028923_p108 | glycosyltransferase/methyltransferase | phrog_8858 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55513 | 56688 |
| YP_009209637.1 | NC_028923_p88 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49624 | 49944 |
| YP_009209559.1 | NC_028923_p10 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7094 | 7498 |
| YP_009209647.1 | NC_028923_p98 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52582 | 52878 |
| YP_009209614.1 | NC_028923_p65 | HTH DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42669 | 43034 |
| YP_009209552.1 | NC_028923_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2249 | 3607 |
| YP_009209601.1 | NC_028923_p52 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 38063 | 38362 |
| YP_009209581.1 | NC_028923_p32 | holin | phrog_443 | holin | lysis | 1 | 28743 | 28976 |
| YP_009209563.1 | NC_028923_p14 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9489 | 13247 |
| YP_009209621.1 | NC_028923_p72 | hypothetical protein | phrog_6573 | unknown function | unknown function | 1 | 45864 | 45968 |
| YP_009209651.1 | NC_028923_p102 | hypothetical protein | phrog_33189 | unknown function | unknown function | 1 | 54225 | 54329 |
| YP_009209586.1 | NC_028923_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30497 | 30718 |
| YP_009209632.1 | NC_028923_p83 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 48516 | 48674 |
| YP_009209598.1 | NC_028923_p49 | hypothetical protein | phrog_23624 | unknown function | unknown function | 1 | 36260 | 36697 |
| YP_009209580.1 | NC_028923_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27727 | 28728 |
| YP_009209644.1 | NC_028923_p95 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51865 | 52077 |
| YP_009209556.1 | NC_028923_p7 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5876 | 6445 |
| YP_009209594.1 | NC_028923_p45 | integrase | phrog_1 | integrase | integration and excision | 1 | 33142 | 34452 |
| YP_009209558.1 | NC_028923_p9 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6778 | 7104 |
| YP_009209589.1 | NC_028923_p40 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 31207 | 31548 |
| YP_009209578.1 | NC_028923_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26304 | 26537 |
| YP_009209561.1 | NC_028923_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8535 | 9471 |
| YP_009209583.1 | NC_028923_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29344 | 29604 |
| YP_009209587.1 | NC_028923_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30711 | 30803 |
| YP_009209658.1 | NC_028923_p109 | galactosyltransferase | phrog_1721 | galactosyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 56685 | 57383 |
| YP_009209611.1 | NC_028923_p62 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 41421 | 41915 |
| YP_009209618.1 | NC_028923_p69 | DNA methylase | phrog_111 | DNA methyltransferase | other | 1 | 44672 | 45172 |
| YP_009209562.1 | NC_028923_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8535 | 9086 |
| YP_009209640.1 | NC_028923_p91 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 50444 | 50656 |
| YP_009209646.1 | NC_028923_p97 | hypothetical protein | phrog_13993 | unknown function | unknown function | 1 | 52211 | 52645 |
| YP_009209570.1 | NC_028923_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23238 | 23579 |
| YP_009209649.1 | NC_028923_p100 | GIY-YIG endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52975 | 53514 |
| YP_009209615.1 | NC_028923_p66 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 43031 | 43189 |
| YP_009209603.1 | NC_028923_p54 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 38571 | 38663 |
| YP_009209584.1 | NC_028923_p35 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29591 | 30412 |
| YP_009209643.1 | NC_028923_p94 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 51239 | 51868 |
| YP_009209600.1 | NC_028923_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37572 | 38066 |
| YP_009209609.1 | NC_028923_p60 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40799 | 41077 |
| YP_009209557.1 | NC_028923_p8 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6442 | 6771 |
| YP_009209567.1 | NC_028923_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17634 | 20171 |
| YP_009209553.1 | NC_028923_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3594 | 4349 |
| YP_009209619.1 | NC_028923_p70 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45173 | 45535 |
| YP_009209560.1 | NC_028923_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7607 | 8416 |
| YP_009209572.1 | NC_028923_p23 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 23867 | 24505 |
| YP_009209654.1 | NC_028923_p105 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54690 | 55103 |
| YP_009209565.1 | NC_028923_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15041 | 16750 |
| YP_009209596.1 | NC_028923_p47 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35229 | 35849 |
| YP_009209564.1 | NC_028923_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13248 | 14957 |
| YP_009209634.1 | NC_028923_p85 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 49078 | 49341 |
| YP_009209613.1 | NC_028923_p64 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 42394 | 42672 |
| YP_009209610.1 | NC_028923_p61 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 41074 | 41421 |
| YP_009209597.1 | NC_028923_p48 | CRO protein | phrog_2104 | unknown function | unknown function | 1 | 35890 | 36201 |
| YP_009209602.1 | NC_028923_p53 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 38359 | 38574 |
| YP_009209617.1 | NC_028923_p68 | AAA ATPase | phrog_1366 | unknown function | unknown function | 1 | 43794 | 44675 |
| YP_009209599.1 | NC_028923_p50 | antirepresser | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 36694 | 37575 |
| YP_009209648.1 | NC_028923_p99 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 52875 | 52952 |
| YP_009209629.1 | NC_028923_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47862 | 48068 |
| YP_009209551.1 | NC_028923_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 581 | 2218 |
| YP_009209630.1 | NC_028923_p81 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 48065 | 48328 |
| YP_009209628.1 | NC_028923_p79 | hypothetical protein | phrog_36360 | unknown function | unknown function | 1 | 47540 | 47854 |
| YP_009209566.1 | NC_028923_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16792 | 17637 |
| YP_009209590.1 | NC_028923_p41 | hypothetical protein | phrog_35396 | unknown function | unknown function | -1 | 31617 | 31814 |
| YP_009209653.1 | NC_028923_p104 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 54493 | 54693 |
| YP_009209616.1 | NC_028923_p67 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 43186 | 43527 |
| YP_009209568.1 | NC_028923_p19 | minor tail protein (D-ala-D-ala carboxypeptidase) | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20168 | 22048 |