Genomic map of Mycobacterium phage Nerujay (NC_028928)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028928
Definition
Mycobacterium phage Nerujay, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53455
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
97
%GC
63.69
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009210414.1 NC_028928_p63 hypothetical protein phrog_1019 unknown function unknown function -1 42035 42121
YP_009210372.1 NC_028928_p21 head-to-tail connector phrog_123 tail terminator connector 1 14587 15033
YP_009210434.1 NC_028928_p83 hypothetical protein phrog_1387 unknown function unknown function -1 49335 49538
YP_009210367.1 NC_028928_p16 major capsid protein phrog_10 major head protein head and packaging 1 12052 13062
YP_009210438.1 NC_028928_p87 hypothetical protein phrog_18314 unknown function unknown function -1 50012 50194
YP_009210378.1 NC_028928_p27 minor tail protein phrog_1543 minor tail protein tail 1 21397 21579
YP_009210358.1 NC_028928_p7 hypothetical protein phrog_1718 tail protein tail 1 3928 4188
YP_009210419.1 NC_028928_p68 hypothetical protein phrog_2507 unknown function unknown function -1 43590 43763
YP_009210426.1 NC_028928_p75 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 45980 46801
YP_009210416.1 NC_028928_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42393 43214
YP_009210406.1 NC_028928_p55 RDF protein phrog_221 metallo-phosphoesterase other -1 37780 38547
YP_009210423.1 NC_028928_p72 hypothetical protein phrog_2184 unknown function unknown function -1 44382 44906
YP_009210368.1 NC_028928_p17 head-to-tail connector phrog_1857 head-tail connector protein connector 1 13141 13377
YP_009210404.1 NC_028928_p53 hypothetical protein phrog_5618 unknown function unknown function -1 37437 37646
YP_009210396.1 NC_028928_p45 hypothetical protein phrog_383 unknown function unknown function -1 32899 33255
YP_009210386.1 NC_028928_p35 hypothetical protein phrog_1560 unknown function unknown function 1 28325 28516
YP_009210375.1 NC_028928_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16006 16383
YP_009210352.1 NC_028928_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 598 906
YP_009210422.1 NC_028928_p71 hypothetical protein phrog_520 unknown function unknown function -1 44092 44385
YP_009210387.1 NC_028928_p36 hypothetical protein phrog_754 minor tail protein tail 1 28513 29472
YP_009210369.1 NC_028928_p18 head-to-tail connector phrog_137 head-tail adaptor Ad1 connector 1 13377 13826
YP_009210365.1 NC_028928_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10530 11471
YP_009210397.1 NC_028928_p46 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33276 35102
YP_009210417.1 NC_028928_p66 hypothetical protein phrog_5323 unknown function unknown function -1 43217 43426
YP_009210382.1 NC_028928_p31 minor tail protein phrog_1397 unknown function unknown function 1 24206 24553
YP_009210412.1 NC_028928_p61 DNA methylase phrog_67 DNA methyltransferase other -1 40460 41557
YP_009210361.1 NC_028928_p10 lysin A phrog_317 endolysin lysis 1 5034 6428
YP_009210442.1 NC_028928_p91 hypothetical protein phrog_2212 unknown function unknown function -1 51247 51366
YP_009210373.1 NC_028928_p22 major tail subunit phrog_117 major tail protein tail 1 15042 15893
YP_009210371.1 NC_028928_p20 head-to-tail connector phrog_321 tail completion or Neck1 protein connector 1 14188 14583
YP_009210408.1 NC_028928_p57 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39284 39805
YP_009210430.1 NC_028928_p79 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 47700 48212
YP_009210362.1 NC_028928_p11 lysin B phrog_102 endolysin lysis 1 6472 7386
YP_009210400.1 NC_028928_p49 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35637 36116
YP_009210393.1 NC_028928_p42 hypothetical protein phrog_2035 unknown function unknown function -1 32359 32529
YP_009210403.1 NC_028928_p52 ECF RNA polymerase sigma factor phrog_354 sigma-K factor transcription regulation -1 36659 37444
YP_009210420.1 NC_028928_p69 hypothetical protein phrog_1690 unknown function unknown function -1 43812 43979
YP_009210394.1 NC_028928_p43 hypothetical protein phrog_1860 unknown function unknown function -1 32526 32612
YP_009210425.1 NC_028928_p74 RecB-like protein phrog_3416 unknown function unknown function -1 45162 45950
YP_009210379.1 NC_028928_p28 minor tail protein phrog_110 minor tail protein tail 1 21579 23381
YP_009210399.1 NC_028928_p48 hypothetical protein phrog_1781 unknown function unknown function -1 35376 35606
YP_009210410.1 NC_028928_p59 hypothetical protein phrog_1783 unknown function unknown function -1 40145 40303
YP_009210353.1 NC_028928_p2 hypothetical protein phrog_4152 unknown function unknown function 1 903 1049
YP_009210432.1 NC_028928_p81 hypothetical protein phrog_7977 unknown function unknown function -1 48766 49035
YP_009210374.1 NC_028928_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16006 16805
YP_009210389.1 NC_028928_p38 integrase phrog_95 integrase integration and excision 1 29948 31531
YP_009210424.1 NC_028928_p73 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44910 45092
YP_009210445.1 NC_028928_p94 hypothetical protein phrog_5419 unknown function unknown function 1 52064 52318
YP_009210448.1 NC_028928_p97 hypothetical protein singleton unknown function unknown function -1 52930 53166
YP_009210392.1 NC_028928_p41 hypothetical protein phrog_13593 unknown function unknown function -1 32132 32362
YP_009210431.1 NC_028928_p80 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 48474 48773
YP_009210440.1 NC_028928_p89 hypothetical protein phrog_5017 unknown function unknown function -1 50682 51029
YP_009210366.1 NC_028928_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11530 12042
YP_009210447.1 NC_028928_p96 hypothetical protein phrog_18559 unknown function unknown function -1 52713 52862
YP_009210421.1 NC_028928_p70 hypothetical protein phrog_1705 unknown function unknown function -1 43979 44095
YP_009210418.1 NC_028928_p67 hypothetical protein phrog_2864 unknown function unknown function -1 43423 43590
YP_009210398.1 NC_028928_p47 hypothetical protein phrog_6173 unknown function unknown function -1 35125 35379
YP_009210363.1 NC_028928_p12 terminase phrog_9 terminase large subunit head and packaging 1 7406 9094
YP_009210409.1 NC_028928_p58 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39651 40166
YP_009210433.1 NC_028928_p82 hypothetical protein phrog_1720 unknown function unknown function -1 49069 49338
YP_009210370.1 NC_028928_p19 head-to-tail connector phrog_320 head closure Hc1 connector 1 13826 14188
YP_009210407.1 NC_028928_p56 hypothetical protein phrog_1167 phosphofructokinase other -1 38544 39287
YP_009210443.1 NC_028928_p92 hypothetical protein phrog_2985 unknown function unknown function 1 51482 51637
YP_009210381.1 NC_028928_p30 minor tail protein phrog_981 minor tail protein tail 1 23877 24209
YP_009210395.1 NC_028928_p44 hypothetical protein phrog_1971 unknown function unknown function -1 32618 32902
YP_009210364.1 NC_028928_p13 portal protein phrog_104 portal protein head and packaging 1 9091 10533
YP_009210380.1 NC_028928_p29 minor tail protein phrog_352 minor tail protein tail 1 23419 23865
YP_009210377.1 NC_028928_p26 minor tail protein phrog_106 minor tail protein tail 1 19321 21378
YP_009210439.1 NC_028928_p88 hypothetical protein phrog_2974 unknown function unknown function -1 50191 50412
YP_009210390.1 NC_028928_p39 hypothetical protein phrog_1966 unknown function unknown function -1 31651 31923
YP_009210388.1 NC_028928_p37 hypothetical protein phrog_411 unknown function unknown function 1 29593 29877
YP_009210437.1 NC_028928_p86 hypothetical protein phrog_2093 unknown function unknown function -1 49887 50015
YP_009210446.1 NC_028928_p95 hypothetical protein phrog_3574 unknown function unknown function 1 52483 52671
YP_009210444.1 NC_028928_p93 hypothetical protein phrog_828 unknown function unknown function 1 51720 51926
YP_009210436.1 NC_028928_p85 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 49723 49890
YP_009210441.1 NC_028928_p90 hypothetical protein phrog_5533 unknown function unknown function -1 51029 51214
YP_009210385.1 NC_028928_p34 hypothetical protein phrog_644 unknown function unknown function 1 27995 28315
YP_009210402.1 NC_028928_p51 hypothetical protein phrog_499 unknown function unknown function -1 36456 36662
YP_009210354.1 NC_028928_p3 hypothetical protein phrog_226 minor tail protein tail 1 1063 1503
YP_009210429.1 NC_028928_p78 hypothetical protein phrog_1809 unknown function unknown function -1 47263 47658
YP_009210356.1 NC_028928_p5 hypothetical protein phrog_1197 tail protein tail 1 2133 3203
YP_009210376.1 NC_028928_p25 tapemeasure protein phrog_305 tail length tape measure protein tail 1 16817 19297
YP_009210415.1 NC_028928_p64 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42118 42393
YP_009210355.1 NC_028928_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1618 1848
YP_009210435.1 NC_028928_p84 hypothetical protein phrog_1155 unknown function unknown function -1 49535 49723
YP_009210405.1 NC_028928_p54 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 37643 37780
YP_009210360.1 NC_028928_p9 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4453 5034
YP_009210357.1 NC_028928_p6 hypothetical protein phrog_553 minor tail protein tail 1 3213 3914
YP_009210413.1 NC_028928_p62 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41554 42048
YP_009210359.1 NC_028928_p8 hypothetical protein phrog_747 unknown function unknown function 1 4196 4453
YP_009210401.1 NC_028928_p50 hypothetical protein phrog_2094 unknown function unknown function -1 36151 36483
YP_009210428.1 NC_028928_p77 hypothetical protein phrog_1584 unknown function unknown function -1 46964 47266
YP_009210391.1 NC_028928_p40 type I restriction enzyme phrog_23413 restriction enzyme I DNA, RNA and nucleotide metabolism -1 31920 32135
YP_009210383.1 NC_028928_p32 minor tail protein phrog_346 minor tail protein tail 1 24578 26431
YP_009210384.1 NC_028928_p33 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 26424 27902
YP_009210411.1 NC_028928_p60 hypothetical protein phrog_397 unknown function unknown function -1 40300 40434
YP_009210427.1 NC_028928_p76 hypothetical protein phrog_6489 unknown function unknown function -1 46815 46964