| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028928 |
Definition |
Mycobacterium phage Nerujay, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53455 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
63.69 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009210414.1 | NC_028928_p63 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42035 | 42121 |
| YP_009210372.1 | NC_028928_p21 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 14587 | 15033 |
| YP_009210434.1 | NC_028928_p83 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49335 | 49538 |
| YP_009210367.1 | NC_028928_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12052 | 13062 |
| YP_009210438.1 | NC_028928_p87 | hypothetical protein | phrog_18314 | unknown function | unknown function | -1 | 50012 | 50194 |
| YP_009210378.1 | NC_028928_p27 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21397 | 21579 |
| YP_009210358.1 | NC_028928_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3928 | 4188 |
| YP_009210419.1 | NC_028928_p68 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43590 | 43763 |
| YP_009210426.1 | NC_028928_p75 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45980 | 46801 |
| YP_009210416.1 | NC_028928_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42393 | 43214 |
| YP_009210406.1 | NC_028928_p55 | RDF protein | phrog_221 | metallo-phosphoesterase | other | -1 | 37780 | 38547 |
| YP_009210423.1 | NC_028928_p72 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44382 | 44906 |
| YP_009210368.1 | NC_028928_p17 | head-to-tail connector | phrog_1857 | head-tail connector protein | connector | 1 | 13141 | 13377 |
| YP_009210404.1 | NC_028928_p53 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 37437 | 37646 |
| YP_009210396.1 | NC_028928_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32899 | 33255 |
| YP_009210386.1 | NC_028928_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28325 | 28516 |
| YP_009210375.1 | NC_028928_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16006 | 16383 |
| YP_009210352.1 | NC_028928_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 598 | 906 |
| YP_009210422.1 | NC_028928_p71 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44092 | 44385 |
| YP_009210387.1 | NC_028928_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28513 | 29472 |
| YP_009210369.1 | NC_028928_p18 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13377 | 13826 |
| YP_009210365.1 | NC_028928_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10530 | 11471 |
| YP_009210397.1 | NC_028928_p46 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33276 | 35102 |
| YP_009210417.1 | NC_028928_p66 | hypothetical protein | phrog_5323 | unknown function | unknown function | -1 | 43217 | 43426 |
| YP_009210382.1 | NC_028928_p31 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 24206 | 24553 |
| YP_009210412.1 | NC_028928_p61 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 40460 | 41557 |
| YP_009210361.1 | NC_028928_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5034 | 6428 |
| YP_009210442.1 | NC_028928_p91 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51247 | 51366 |
| YP_009210373.1 | NC_028928_p22 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15042 | 15893 |
| YP_009210371.1 | NC_028928_p20 | head-to-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14188 | 14583 |
| YP_009210408.1 | NC_028928_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39284 | 39805 |
| YP_009210430.1 | NC_028928_p79 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47700 | 48212 |
| YP_009210362.1 | NC_028928_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6472 | 7386 |
| YP_009210400.1 | NC_028928_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35637 | 36116 |
| YP_009210393.1 | NC_028928_p42 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32359 | 32529 |
| YP_009210403.1 | NC_028928_p52 | ECF RNA polymerase sigma factor | phrog_354 | sigma-K factor | transcription regulation | -1 | 36659 | 37444 |
| YP_009210420.1 | NC_028928_p69 | hypothetical protein | phrog_1690 | unknown function | unknown function | -1 | 43812 | 43979 |
| YP_009210394.1 | NC_028928_p43 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32526 | 32612 |
| YP_009210425.1 | NC_028928_p74 | RecB-like protein | phrog_3416 | unknown function | unknown function | -1 | 45162 | 45950 |
| YP_009210379.1 | NC_028928_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21579 | 23381 |
| YP_009210399.1 | NC_028928_p48 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35376 | 35606 |
| YP_009210410.1 | NC_028928_p59 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40145 | 40303 |
| YP_009210353.1 | NC_028928_p2 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 903 | 1049 |
| YP_009210432.1 | NC_028928_p81 | hypothetical protein | phrog_7977 | unknown function | unknown function | -1 | 48766 | 49035 |
| YP_009210374.1 | NC_028928_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16006 | 16805 |
| YP_009210389.1 | NC_028928_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 29948 | 31531 |
| YP_009210424.1 | NC_028928_p73 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44910 | 45092 |
| YP_009210445.1 | NC_028928_p94 | hypothetical protein | phrog_5419 | unknown function | unknown function | 1 | 52064 | 52318 |
| YP_009210448.1 | NC_028928_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52930 | 53166 |
| YP_009210392.1 | NC_028928_p41 | hypothetical protein | phrog_13593 | unknown function | unknown function | -1 | 32132 | 32362 |
| YP_009210431.1 | NC_028928_p80 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48474 | 48773 |
| YP_009210440.1 | NC_028928_p89 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 50682 | 51029 |
| YP_009210366.1 | NC_028928_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11530 | 12042 |
| YP_009210447.1 | NC_028928_p96 | hypothetical protein | phrog_18559 | unknown function | unknown function | -1 | 52713 | 52862 |
| YP_009210421.1 | NC_028928_p70 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43979 | 44095 |
| YP_009210418.1 | NC_028928_p67 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 43423 | 43590 |
| YP_009210398.1 | NC_028928_p47 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 35125 | 35379 |
| YP_009210363.1 | NC_028928_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7406 | 9094 |
| YP_009210409.1 | NC_028928_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39651 | 40166 |
| YP_009210433.1 | NC_028928_p82 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 49069 | 49338 |
| YP_009210370.1 | NC_028928_p19 | head-to-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13826 | 14188 |
| YP_009210407.1 | NC_028928_p56 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38544 | 39287 |
| YP_009210443.1 | NC_028928_p92 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 51482 | 51637 |
| YP_009210381.1 | NC_028928_p30 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23877 | 24209 |
| YP_009210395.1 | NC_028928_p44 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32618 | 32902 |
| YP_009210364.1 | NC_028928_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9091 | 10533 |
| YP_009210380.1 | NC_028928_p29 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23419 | 23865 |
| YP_009210377.1 | NC_028928_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19321 | 21378 |
| YP_009210439.1 | NC_028928_p88 | hypothetical protein | phrog_2974 | unknown function | unknown function | -1 | 50191 | 50412 |
| YP_009210390.1 | NC_028928_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31651 | 31923 |
| YP_009210388.1 | NC_028928_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29593 | 29877 |
| YP_009210437.1 | NC_028928_p86 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49887 | 50015 |
| YP_009210446.1 | NC_028928_p95 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 52483 | 52671 |
| YP_009210444.1 | NC_028928_p93 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 51720 | 51926 |
| YP_009210436.1 | NC_028928_p85 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49723 | 49890 |
| YP_009210441.1 | NC_028928_p90 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 51029 | 51214 |
| YP_009210385.1 | NC_028928_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27995 | 28315 |
| YP_009210402.1 | NC_028928_p51 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36456 | 36662 |
| YP_009210354.1 | NC_028928_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1063 | 1503 |
| YP_009210429.1 | NC_028928_p78 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 47263 | 47658 |
| YP_009210356.1 | NC_028928_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2133 | 3203 |
| YP_009210376.1 | NC_028928_p25 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16817 | 19297 |
| YP_009210415.1 | NC_028928_p64 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42118 | 42393 |
| YP_009210355.1 | NC_028928_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1618 | 1848 |
| YP_009210435.1 | NC_028928_p84 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49535 | 49723 |
| YP_009210405.1 | NC_028928_p54 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37643 | 37780 |
| YP_009210360.1 | NC_028928_p9 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4453 | 5034 |
| YP_009210357.1 | NC_028928_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3213 | 3914 |
| YP_009210413.1 | NC_028928_p62 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41554 | 42048 |
| YP_009210359.1 | NC_028928_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4196 | 4453 |
| YP_009210401.1 | NC_028928_p50 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 36151 | 36483 |
| YP_009210428.1 | NC_028928_p77 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 46964 | 47266 |
| YP_009210391.1 | NC_028928_p40 | type I restriction enzyme | phrog_23413 | restriction enzyme I | DNA, RNA and nucleotide metabolism | -1 | 31920 | 32135 |
| YP_009210383.1 | NC_028928_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24578 | 26431 |
| YP_009210384.1 | NC_028928_p33 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26424 | 27902 |
| YP_009210411.1 | NC_028928_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40300 | 40434 |
| YP_009210427.1 | NC_028928_p76 | hypothetical protein | phrog_6489 | unknown function | unknown function | -1 | 46815 | 46964 |