Genomic map of Listeria phage vB_LmoS_293 (NC_028929)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028929
Definition
Listeria phage vB_LmoS_293, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40759
Host Name
Listeria monocytogenes
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
36.86
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009210472.1 NC_028929_p24 holin phrog_297 holin lysis 1 19682 19966
YP_009210500.1 NC_028929_p52 hypothetical protein phrog_15289 unknown function unknown function 1 34018 34410
YP_009210456.1 NC_028929_p8 head-tail connector protein phrog_541 head-tail adaptor connector 1 6240 6635
YP_009210466.1 NC_028929_p18 tail endopeptidase phrog_326 tail protein with endopeptidase domain other 1 15742 16764
YP_009210481.1 NC_028929_p33 zinc-ribbon domain-containing protein phrog_6586 unknown function unknown function -1 25590 25808
YP_009210496.1 NC_028929_p48 recombinational DNA repair protein RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 31820 32635
YP_009210512.1 NC_028929_p64 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 37781 38263
YP_009210514.1 NC_028929_p66 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38549 38824
YP_009210517.1 NC_028929_p69 hypothetical protein phrog_4556 unknown function unknown function 1 39353 39508
YP_009210458.1 NC_028929_p10 minor capsid protein phrog_556 minor head protein head and packaging 1 6997 7335
YP_009210499.1 NC_028929_p51 hypothetical protein phrog_9484 unknown function unknown function 1 33752 34021
YP_009210457.1 NC_028929_p9 minor capsid protein phrog_793 head-tail adaptor connector 1 6635 6997
YP_009210455.1 NC_028929_p7 hypothetical protein phrog_2250 unknown function unknown function 1 6080 6238
YP_009210461.1 NC_028929_p13 Ig-like virion protein phrog_215 structural protein with Ig domain head and packaging 1 8151 8444
YP_009210513.1 NC_028929_p65 hypothetical protein phrog_6184 unknown function unknown function 1 38284 38475
YP_009210505.1 NC_028929_p57 hypothetical protein phrog_98 unknown function unknown function 1 35660 36085
YP_009210475.1 NC_028929_p27 hypothetical protein phrog_1758 acetyltransferase other 1 21345 21881
YP_009210503.1 NC_028929_p55 hypothetical protein phrog_15289 unknown function unknown function 1 35065 35463
YP_009210506.1 NC_028929_p58 phenylalanyl-tRNA synthetase subunit beta phrog_11760 unknown function unknown function 1 36086 36259
YP_009210470.1 NC_028929_p22 hypothetical protein phrog_134 unknown function unknown function 1 19193 19339
YP_009210449.1 NC_028929_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 19 549
YP_009210482.1 NC_028929_p34 hypothetical protein phrog_87 metallo-protease other -1 25831 26322
YP_009210485.1 NC_028929_p37 hypothetical protein phrog_5868 unknown function unknown function 1 27031 27297
YP_009210469.1 NC_028929_p21 short tail fiber phrog_1766 tail fiber protein tail 1 18851 19192
YP_009210516.1 NC_028929_p68 hypothetical protein phrog_7279 unknown function unknown function 1 39204 39329
YP_009210497.1 NC_028929_p49 DnaD domain protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 32656 33573
YP_009210476.1 NC_028929_p28 hypothetical protein phrog_4945 unknown function unknown function 1 22135 22368
YP_009210515.1 NC_028929_p67 hypothetical protein phrog_5229 unknown function unknown function 1 38828 39211
YP_009210489.1 NC_028929_p41 hypothetical protein phrog_7246 unknown function unknown function 1 28350 28511
YP_009210484.1 NC_028929_p36 cro-like repressor DNA-binding protein phrog_3 transcriptional repressor transcription regulation 1 26773 27027
YP_009210504.1 NC_028929_p56 hypothetical protein phrog_12891 unknown function unknown function 1 35466 35663
YP_009210463.1 NC_028929_p15 hypothetical protein phrog_706 unknown function unknown function 1 8925 9527
YP_009210495.1 NC_028929_p47 recombination-related protein phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 30861 31820
YP_009210508.1 NC_028929_p60 hypothetical protein phrog_6964 unknown function unknown function 1 36459 36749
YP_009210459.1 NC_028929_p11 minor capsid protein phrog_913 minor head protein head and packaging 1 7335 7742
YP_009210498.1 NC_028929_p50 hypothetical protein phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 33570 33737
YP_009210477.1 NC_028929_p29 hypothetical protein phrog_4724 unknown function unknown function 1 22365 22571
YP_009210464.1 NC_028929_p16 tail tape-measure protein phrog_1686 tail length tape measure protein tail 1 9538 14904
YP_009210509.1 NC_028929_p61 hypothetical protein phrog_1494 unknown function unknown function 1 36749 36934
YP_009210487.1 NC_028929_p39 hypothetical protein phrog_8844 unknown function unknown function 1 27727 28011
YP_009210507.1 NC_028929_p59 hypothetical protein phrog_11379 unknown function unknown function 1 36256 36462
YP_009210450.1 NC_028929_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 530 1861
YP_009210491.1 NC_028929_p43 antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 28810 29586
YP_009210478.1 NC_028929_p30 integrase phrog_1 integrase integration and excision -1 22820 24022
YP_009210471.1 NC_028929_p23 hypothetical protein phrog_3999 unknown function unknown function 1 19380 19685
YP_009210467.1 NC_028929_p19 pectin lyase fold containing protein phrog_4577 tail protein tail 1 16765 17790
YP_009210480.1 NC_028929_p32 hypothetical protein phrog_9828 unknown function unknown function -1 24852 25574
YP_009210462.1 NC_028929_p14 hypothetical protein phrog_1061 unknown function unknown function 1 8497 8919
YP_009210453.1 NC_028929_p5 capsid scaffolding protein phrog_194 head scaffolding protein head and packaging 1 4588 5157
YP_009210520.1 NC_028929_p72 hypothetical protein singleton unknown function unknown function 1 40539 40730
YP_009210519.1 NC_028929_p71 hypothetical protein singleton unknown function unknown function 1 40307 40435
YP_009210454.1 NC_028929_p6 main capsid protein phrog_10 major head protein head and packaging 1 5181 6080
YP_009210494.1 NC_028929_p46 hypothetical protein phrog_5174 unknown function unknown function 1 30440 30628
YP_009210483.1 NC_028929_p35 CI-like repressor phrog_8 transcriptional regulator transcription regulation -1 26355 26660
YP_009210465.1 NC_028929_p17 tail component protein phrog_33 distal tail protein Dit tail 1 14901 15728
YP_009210492.1 NC_028929_p44 DNA-binding domain-containing protein phrog_1124 transcriptional regulator transcription regulation 1 29708 30232
YP_009210460.1 NC_028929_p12 tail shaft protein Tsh phrog_820 major tail protein tail 1 7745 8182
YP_009210510.1 NC_028929_p62 RNA-binding protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 37144 37371
YP_009210501.1 NC_028929_p53 hypothetical protein phrog_121 unknown function unknown function 1 34407 34946
YP_009210474.1 NC_028929_p26 hypothetical protein singleton unknown function unknown function 1 21166 21345
YP_009210479.1 NC_028929_p31 hypothetical protein phrog_11062 unknown function unknown function -1 24090 24830
YP_009210493.1 NC_028929_p45 DNA-binding domain-containing protein phrog_66 excisionase and transcriptional regulator integration and excision 1 30239 30424
YP_009210502.1 NC_028929_p54 hypothetical protein singleton unknown function unknown function 1 34964 35062
YP_009210473.1 NC_028929_p25 N-acetylmuramoyl-L-alanine amidase phrog_1794 amidase lysis 1 19966 20916
YP_009210486.1 NC_028929_p38 hypothetical protein phrog_6150 unknown function unknown function 1 27521 27715
YP_009210468.1 NC_028929_p20 hypothetical protein phrog_3285 minor tail protein tail 1 17787 18854
YP_009210488.1 NC_028929_p40 hypothetical protein phrog_5996 unknown function unknown function 1 28037 28318
YP_009210511.1 NC_028929_p63 hypothetical protein phrog_5780 unknown function unknown function 1 37383 37784
YP_009210451.1 NC_028929_p3 portal protein phrog_533 portal protein head and packaging 1 1874 3364
YP_009210518.1 NC_028929_p70 RNA polymerase sigma70 phrog_1190 RNA polymerase sigma factor transcription regulation 1 39601 40173
YP_009210490.1 NC_028929_p42 hypothetical protein phrog_10029 unknown function unknown function -1 28504 28746
YP_009210452.1 NC_028929_p4 minor capsid protein phrog_581 minor head protein head and packaging 1 3370 4509