| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028929 |
Definition |
Listeria phage vB_LmoS_293, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40759 |
Host Name |
Listeria monocytogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
36.86 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009210472.1 | NC_028929_p24 | holin | phrog_297 | holin | lysis | 1 | 19682 | 19966 |
| YP_009210500.1 | NC_028929_p52 | hypothetical protein | phrog_15289 | unknown function | unknown function | 1 | 34018 | 34410 |
| YP_009210456.1 | NC_028929_p8 | head-tail connector protein | phrog_541 | head-tail adaptor | connector | 1 | 6240 | 6635 |
| YP_009210466.1 | NC_028929_p18 | tail endopeptidase | phrog_326 | tail protein with endopeptidase domain | other | 1 | 15742 | 16764 |
| YP_009210481.1 | NC_028929_p33 | zinc-ribbon domain-containing protein | phrog_6586 | unknown function | unknown function | -1 | 25590 | 25808 |
| YP_009210496.1 | NC_028929_p48 | recombinational DNA repair protein RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31820 | 32635 |
| YP_009210512.1 | NC_028929_p64 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37781 | 38263 |
| YP_009210514.1 | NC_028929_p66 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38549 | 38824 |
| YP_009210517.1 | NC_028929_p69 | hypothetical protein | phrog_4556 | unknown function | unknown function | 1 | 39353 | 39508 |
| YP_009210458.1 | NC_028929_p10 | minor capsid protein | phrog_556 | minor head protein | head and packaging | 1 | 6997 | 7335 |
| YP_009210499.1 | NC_028929_p51 | hypothetical protein | phrog_9484 | unknown function | unknown function | 1 | 33752 | 34021 |
| YP_009210457.1 | NC_028929_p9 | minor capsid protein | phrog_793 | head-tail adaptor | connector | 1 | 6635 | 6997 |
| YP_009210455.1 | NC_028929_p7 | hypothetical protein | phrog_2250 | unknown function | unknown function | 1 | 6080 | 6238 |
| YP_009210461.1 | NC_028929_p13 | Ig-like virion protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 8151 | 8444 |
| YP_009210513.1 | NC_028929_p65 | hypothetical protein | phrog_6184 | unknown function | unknown function | 1 | 38284 | 38475 |
| YP_009210505.1 | NC_028929_p57 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 35660 | 36085 |
| YP_009210475.1 | NC_028929_p27 | hypothetical protein | phrog_1758 | acetyltransferase | other | 1 | 21345 | 21881 |
| YP_009210503.1 | NC_028929_p55 | hypothetical protein | phrog_15289 | unknown function | unknown function | 1 | 35065 | 35463 |
| YP_009210506.1 | NC_028929_p58 | phenylalanyl-tRNA synthetase subunit beta | phrog_11760 | unknown function | unknown function | 1 | 36086 | 36259 |
| YP_009210470.1 | NC_028929_p22 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 19193 | 19339 |
| YP_009210449.1 | NC_028929_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 19 | 549 |
| YP_009210482.1 | NC_028929_p34 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 25831 | 26322 |
| YP_009210485.1 | NC_028929_p37 | hypothetical protein | phrog_5868 | unknown function | unknown function | 1 | 27031 | 27297 |
| YP_009210469.1 | NC_028929_p21 | short tail fiber | phrog_1766 | tail fiber protein | tail | 1 | 18851 | 19192 |
| YP_009210516.1 | NC_028929_p68 | hypothetical protein | phrog_7279 | unknown function | unknown function | 1 | 39204 | 39329 |
| YP_009210497.1 | NC_028929_p49 | DnaD domain protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 32656 | 33573 |
| YP_009210476.1 | NC_028929_p28 | hypothetical protein | phrog_4945 | unknown function | unknown function | 1 | 22135 | 22368 |
| YP_009210515.1 | NC_028929_p67 | hypothetical protein | phrog_5229 | unknown function | unknown function | 1 | 38828 | 39211 |
| YP_009210489.1 | NC_028929_p41 | hypothetical protein | phrog_7246 | unknown function | unknown function | 1 | 28350 | 28511 |
| YP_009210484.1 | NC_028929_p36 | cro-like repressor DNA-binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26773 | 27027 |
| YP_009210504.1 | NC_028929_p56 | hypothetical protein | phrog_12891 | unknown function | unknown function | 1 | 35466 | 35663 |
| YP_009210463.1 | NC_028929_p15 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 8925 | 9527 |
| YP_009210495.1 | NC_028929_p47 | recombination-related protein | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30861 | 31820 |
| YP_009210508.1 | NC_028929_p60 | hypothetical protein | phrog_6964 | unknown function | unknown function | 1 | 36459 | 36749 |
| YP_009210459.1 | NC_028929_p11 | minor capsid protein | phrog_913 | minor head protein | head and packaging | 1 | 7335 | 7742 |
| YP_009210498.1 | NC_028929_p50 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 33570 | 33737 |
| YP_009210477.1 | NC_028929_p29 | hypothetical protein | phrog_4724 | unknown function | unknown function | 1 | 22365 | 22571 |
| YP_009210464.1 | NC_028929_p16 | tail tape-measure protein | phrog_1686 | tail length tape measure protein | tail | 1 | 9538 | 14904 |
| YP_009210509.1 | NC_028929_p61 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 36749 | 36934 |
| YP_009210487.1 | NC_028929_p39 | hypothetical protein | phrog_8844 | unknown function | unknown function | 1 | 27727 | 28011 |
| YP_009210507.1 | NC_028929_p59 | hypothetical protein | phrog_11379 | unknown function | unknown function | 1 | 36256 | 36462 |
| YP_009210450.1 | NC_028929_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 530 | 1861 |
| YP_009210491.1 | NC_028929_p43 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 28810 | 29586 |
| YP_009210478.1 | NC_028929_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 22820 | 24022 |
| YP_009210471.1 | NC_028929_p23 | hypothetical protein | phrog_3999 | unknown function | unknown function | 1 | 19380 | 19685 |
| YP_009210467.1 | NC_028929_p19 | pectin lyase fold containing protein | phrog_4577 | tail protein | tail | 1 | 16765 | 17790 |
| YP_009210480.1 | NC_028929_p32 | hypothetical protein | phrog_9828 | unknown function | unknown function | -1 | 24852 | 25574 |
| YP_009210462.1 | NC_028929_p14 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 8497 | 8919 |
| YP_009210453.1 | NC_028929_p5 | capsid scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4588 | 5157 |
| YP_009210520.1 | NC_028929_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40539 | 40730 |
| YP_009210519.1 | NC_028929_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40307 | 40435 |
| YP_009210454.1 | NC_028929_p6 | main capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5181 | 6080 |
| YP_009210494.1 | NC_028929_p46 | hypothetical protein | phrog_5174 | unknown function | unknown function | 1 | 30440 | 30628 |
| YP_009210483.1 | NC_028929_p35 | CI-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 26355 | 26660 |
| YP_009210465.1 | NC_028929_p17 | tail component protein | phrog_33 | distal tail protein Dit | tail | 1 | 14901 | 15728 |
| YP_009210492.1 | NC_028929_p44 | DNA-binding domain-containing protein | phrog_1124 | transcriptional regulator | transcription regulation | 1 | 29708 | 30232 |
| YP_009210460.1 | NC_028929_p12 | tail shaft protein Tsh | phrog_820 | major tail protein | tail | 1 | 7745 | 8182 |
| YP_009210510.1 | NC_028929_p62 | RNA-binding protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 37144 | 37371 |
| YP_009210501.1 | NC_028929_p53 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 34407 | 34946 |
| YP_009210474.1 | NC_028929_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21166 | 21345 |
| YP_009210479.1 | NC_028929_p31 | hypothetical protein | phrog_11062 | unknown function | unknown function | -1 | 24090 | 24830 |
| YP_009210493.1 | NC_028929_p45 | DNA-binding domain-containing protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 30239 | 30424 |
| YP_009210502.1 | NC_028929_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34964 | 35062 |
| YP_009210473.1 | NC_028929_p25 | N-acetylmuramoyl-L-alanine amidase | phrog_1794 | amidase | lysis | 1 | 19966 | 20916 |
| YP_009210486.1 | NC_028929_p38 | hypothetical protein | phrog_6150 | unknown function | unknown function | 1 | 27521 | 27715 |
| YP_009210468.1 | NC_028929_p20 | hypothetical protein | phrog_3285 | minor tail protein | tail | 1 | 17787 | 18854 |
| YP_009210488.1 | NC_028929_p40 | hypothetical protein | phrog_5996 | unknown function | unknown function | 1 | 28037 | 28318 |
| YP_009210511.1 | NC_028929_p63 | hypothetical protein | phrog_5780 | unknown function | unknown function | 1 | 37383 | 37784 |
| YP_009210451.1 | NC_028929_p3 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 1874 | 3364 |
| YP_009210518.1 | NC_028929_p70 | RNA polymerase sigma70 | phrog_1190 | RNA polymerase sigma factor | transcription regulation | 1 | 39601 | 40173 |
| YP_009210490.1 | NC_028929_p42 | hypothetical protein | phrog_10029 | unknown function | unknown function | -1 | 28504 | 28746 |
| YP_009210452.1 | NC_028929_p4 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 3370 | 4509 |