| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028930 |
Definition |
Paenibacillus phage Tripp, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Trippvirus; Paenibacillus virus Tripp. |
DB of origin |
REFSEQ |
Length |
54439 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
48.31 |
Number of singletons |
34 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009210586.1 | NC_028930_p66 | hypothetical protein | phrog_4867 | unknown function | unknown function | 1 | 40413 | 40745 |
| YP_009210522.1 | NC_028930_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 772 | 951 |
| YP_009210526.1 | NC_028930_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5471 | 5584 |
| YP_009210534.1 | NC_028930_p14 | hypothetical protein | phrog_18210 | unknown function | unknown function | 1 | 9367 | 9744 |
| YP_009210563.1 | NC_028930_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27127 | 27453 |
| YP_009210540.1 | NC_028930_p20 | holin | phrog_199 | holin | lysis | 1 | 17214 | 17630 |
| YP_009210527.1 | NC_028930_p7 | scaffold protein | phrog_2303 | head scaffolding protein | head and packaging | 1 | 5587 | 6222 |
| YP_009210599.1 | NC_028930_p79 | hypothetical protein | phrog_17910 | unknown function | unknown function | 1 | 46446 | 47321 |
| YP_009210553.1 | NC_028930_p33 | repressor-like protein | phrog_811 | UmuD-like protein | DNA, RNA and nucleotide metabolism | -1 | 23130 | 23612 |
| YP_009210559.1 | NC_028930_p39 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 25589 | 26383 |
| YP_009210602.1 | NC_028930_p82 | DNA methyltransferase | phrog_3820 | DNA methyltransferase | other | 1 | 48332 | 49522 |
| YP_009210609.1 | NC_028930_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52776 | 52994 |
| YP_009210562.1 | NC_028930_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26798 | 27100 |
| YP_009210585.1 | NC_028930_p65 | DNA polymerase | phrog_12241 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 38756 | 40411 |
| YP_009210564.1 | NC_028930_p44 | DNA binding-like protein | phrog_12720 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 27475 | 27801 |
| YP_009210533.1 | NC_028930_p13 | hypothetical protein | phrog_2175 | protein with Ig domain | other | 1 | 8767 | 9315 |
| YP_009210539.1 | NC_028930_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16789 | 17226 |
| YP_009210600.1 | NC_028930_p80 | ATPase-like protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 47305 | 47865 |
| YP_009210572.1 | NC_028930_p52 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31148 | 31918 |
| YP_009210545.1 | NC_028930_p25 | transposase | phrog_33747 | transposase | integration and excision | -1 | 19376 | 19606 |
| YP_009210556.1 | NC_028930_p36 | excisionase-like protein | phrog_15534 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 24192 | 24473 |
| YP_009210590.1 | NC_028930_p70 | hypothetical protein | phrog_1706 | CRISPR/Cas system associated | DNA, RNA and nucleotide metabolism | 1 | 42854 | 43714 |
| YP_009210541.1 | NC_028930_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_2742 | endolysin | lysis | 1 | 17623 | 18492 |
| YP_009210584.1 | NC_028930_p64 | hypothetical protein | phrog_15694 | unknown function | unknown function | 1 | 37808 | 38614 |
| YP_009210532.1 | NC_028930_p12 | hypothetical protein | phrog_10344 | minor head protein | head and packaging | 1 | 8379 | 8753 |
| YP_009210611.1 | NC_028930_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53153 | 53572 |
| YP_009210598.1 | NC_028930_p78 | hypothetical protein | phrog_1281 | unknown function | unknown function | 1 | 45978 | 46442 |
| YP_009210543.1 | NC_028930_p23 | transposase | phrog_4716 | transposase | integration and excision | -1 | 18845 | 19213 |
| YP_009210587.1 | NC_028930_p67 | DNA polymerase | phrog_10285 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 40735 | 41901 |
| YP_009210605.1 | NC_028930_p85 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 50453 | 50686 |
| YP_009210535.1 | NC_028930_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9867 | 10094 |
| YP_009210525.1 | NC_028930_p5 | minor capsid protein | phrog_4611 | minor head protein | head and packaging | 1 | 4636 | 5496 |
| YP_009210548.1 | NC_028930_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20607 | 20858 |
| YP_009210565.1 | NC_028930_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27970 | 28218 |
| YP_009210542.1 | NC_028930_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18653 | 18880 |
| YP_009210569.1 | NC_028930_p49 | DNA methyltransferase-like protein | phrog_1733 | unknown function | unknown function | 1 | 29411 | 30262 |
| YP_009210555.1 | NC_028930_p35 | DNA binding-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 23947 | 24168 |
| YP_009210582.1 | NC_028930_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37227 | 37436 |
| YP_009210529.1 | NC_028930_p9 | hypothetical protein | phrog_10959 | unknown function | unknown function | 1 | 7244 | 7627 |
| YP_009210537.1 | NC_028930_p17 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 13012 | 14469 |
| YP_009210588.1 | NC_028930_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41902 | 42099 |
| YP_009210547.1 | NC_028930_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19939 | 20571 |
| YP_009210552.1 | NC_028930_p32 | integrase | phrog_1 | integrase | integration and excision | -1 | 21939 | 23117 |
| YP_009210578.1 | NC_028930_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36298 | 36453 |
| YP_009210596.1 | NC_028930_p76 | metallopeptidase | phrog_9897 | unknown function | unknown function | 1 | 45276 | 45665 |
| YP_009210523.1 | NC_028930_p3 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 1350 | 3116 |
| YP_009210606.1 | NC_028930_p86 | HicB-like antitoxin | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | 1 | 50752 | 51159 |
| YP_009210554.1 | NC_028930_p34 | repressor-like domain protein | singleton | unknown function | unknown function | -1 | 23618 | 23770 |
| YP_009210528.1 | NC_028930_p8 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 6279 | 7229 |
| YP_009210612.1 | NC_028930_p92 | DNA binding domain protein | phrog_2538 | terminase small subunit | head and packaging | 1 | 53562 | 53951 |
| YP_009210550.1 | NC_028930_p30 | hypothetical protein | phrog_34234 | unknown function | unknown function | -1 | 21268 | 21654 |
| YP_009210530.1 | NC_028930_p10 | hypothetical protein | phrog_21832 | unknown function | unknown function | 1 | 7628 | 7960 |
| YP_009210558.1 | NC_028930_p38 | hypothetical protein | phrog_10141 | unknown function | unknown function | 1 | 24929 | 25567 |
| YP_009210566.1 | NC_028930_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28249 | 28614 |
| YP_009210604.1 | NC_028930_p84 | hypothetical protein | phrog_13088 | unknown function | unknown function | 1 | 49904 | 50362 |
| YP_009210567.1 | NC_028930_p47 | hypothetical protein | phrog_154 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 28672 | 29043 |
| YP_009210560.1 | NC_028930_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26380 | 26631 |
| YP_009210570.1 | NC_028930_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30339 | 30863 |
| YP_009210524.1 | NC_028930_p4 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 3257 | 4639 |
| YP_009210549.1 | NC_028930_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20894 | 21100 |
| YP_009210579.1 | NC_028930_p59 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 36466 | 36681 |
| YP_009210594.1 | NC_028930_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44828 | 44989 |
| YP_009210536.1 | NC_028930_p16 | tape measure | phrog_1533 | tail length tape measure protein | tail | 1 | 10122 | 13010 |
| YP_009210610.1 | NC_028930_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52984 | 53151 |
| YP_009210580.1 | NC_028930_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36678 | 36797 |
| YP_009210583.1 | NC_028930_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37447 | 37815 |
| YP_009210607.1 | NC_028930_p87 | hypothetical protein | phrog_27153 | unknown function | unknown function | 1 | 51334 | 51600 |
| YP_009210574.1 | NC_028930_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 33304 | 34254 |
| YP_009210551.1 | NC_028930_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21753 | 21875 |
| YP_009210591.1 | NC_028930_p71 | resolvase | singleton | unknown function | unknown function | 1 | 43992 | 44222 |
| YP_009210592.1 | NC_028930_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44219 | 44392 |
| YP_009210573.1 | NC_028930_p53 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 31915 | 33291 |
| YP_009210577.1 | NC_028930_p57 | single-stranded DNA-binding protein | phrog_20486 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35547 | 36284 |
| YP_009210593.1 | NC_028930_p73 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 44460 | 44798 |
| YP_009210603.1 | NC_028930_p83 | SigK-like protein | phrog_3512 | sigma factor | transcription regulation | 1 | 49510 | 49914 |
| YP_009210601.1 | NC_028930_p81 | hypothetical protein | phrog_18159 | unknown function | unknown function | -1 | 47822 | 48205 |
| YP_009210608.1 | NC_028930_p88 | hypothetical protein | phrog_9501 | unknown function | unknown function | 1 | 51597 | 52433 |
| YP_009210575.1 | NC_028930_p55 | hypothetical protein | phrog_24888 | unknown function | unknown function | 1 | 34307 | 34870 |
| YP_009210595.1 | NC_028930_p75 | hypothetical protein | phrog_26793 | unknown function | unknown function | 1 | 45040 | 45261 |
| YP_009210531.1 | NC_028930_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7957 | 8382 |
| YP_009210521.1 | NC_028930_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 572 | 646 |
| YP_009210581.1 | NC_028930_p61 | hypothetical protein | phrog_5018 | unknown function | unknown function | 1 | 36826 | 37239 |
| YP_009210568.1 | NC_028930_p48 | hypothetical protein | phrog_6154 | unknown function | unknown function | 1 | 29027 | 29395 |
| YP_009210557.1 | NC_028930_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24586 | 24888 |
| YP_009210561.1 | NC_028930_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26628 | 26801 |
| YP_009210571.1 | NC_028930_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30874 | 31146 |
| YP_009210597.1 | NC_028930_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45667 | 45984 |
| YP_009210589.1 | NC_028930_p69 | DNA polymerase III | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 42096 | 42710 |
| YP_009210544.1 | NC_028930_p24 | transposase | phrog_6657 | unknown function | unknown function | -1 | 19234 | 19606 |
| YP_009210576.1 | NC_028930_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34933 | 35460 |
| YP_009210546.1 | NC_028930_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19644 | 19883 |
| YP_009210538.1 | NC_028930_p18 | minor tail protein | phrog_12312 | virion structural protein | head and packaging | 1 | 14471 | 16792 |