Genomic map of Pseudomonas phage PaMx28 (NC_028931)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028931
Definition
Pseudomonas phage PaMx28, partial genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pamexvirus.
DB of origin
REFSEQ
Length
55108
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
66.4
Number of singletons
7
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009210617.1 NC_028931_p5 terminase large subunit phrog_2 terminase large subunit head and packaging 1 2096 3580
YP_009210646.1 NC_028931_p34 virion structural protein singleton unknown function unknown function 1 29907 30806
YP_009210653.1 NC_028931_p41 hypothetical protein phrog_27196 unknown function unknown function -1 33123 33323
YP_009210685.1 NC_028931_p73 hypothetical protein phrog_19009 unknown function unknown function 1 52023 52373
YP_009210616.1 NC_028931_p4 hypothetical protein phrog_6596 unknown function unknown function 1 1605 2099
YP_009210631.1 NC_028931_p19 major head protein phrog_212 major head protein head and packaging 1 16624 17553
YP_009210625.1 NC_028931_p13 YbiA-like protein phrog_1017 unknown function unknown function -1 13332 13841
YP_009210643.1 NC_028931_p31 virion structural protein phrog_1180 tail assembly chaperone tail 1 26633 26866
YP_009210622.1 NC_028931_p10 morphogenesis protein phrog_21789 virion structural protein head and packaging 1 8474 12055
YP_009210661.1 NC_028931_p49 dihydrofolate reductase phrog_13578 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 36471 36926
YP_009210657.1 NC_028931_p45 HIRAN domain-containing protein phrog_18569 unknown function unknown function -1 34114 34401
YP_009210614.1 NC_028931_p2 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 1004 1267
YP_009210654.1 NC_028931_p42 hypothetical protein singleton unknown function unknown function -1 33360 33533
YP_009210624.1 NC_028931_p12 virion structural protein phrog_206 head scaffolding protein head and packaging 1 12453 13229
YP_009210623.1 NC_028931_p11 hypothetical protein phrog_20070 unknown function unknown function 1 12057 12344
YP_009210636.1 NC_028931_p24 tail terminator protein phrog_179 tail terminator connector 1 19394 19813
YP_009210651.1 NC_028931_p39 hypothetical protein singleton unknown function unknown function 1 32567 32728
YP_009210658.1 NC_028931_p46 hypothetical protein phrog_16873 unknown function unknown function -1 34413 34934
YP_009210613.1 NC_028931_p1 terminase small subunit phrog_4044 terminase small subunit head and packaging 1 83 955
YP_009210677.1 NC_028931_p65 hypothetical protein phrog_14658 unknown function unknown function -1 47038 47346
YP_009210673.1 NC_028931_p61 hypothetical protein phrog_25659 unknown function unknown function -1 46007 46264
YP_009210664.1 NC_028931_p52 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 37882 38778
YP_009210662.1 NC_028931_p50 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 36931 37395
YP_009210629.1 NC_028931_p17 hypothetical protein phrog_11770 unknown function unknown function -1 15614 15826
YP_009210627.1 NC_028931_p15 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism -1 14594 15145
YP_009210669.1 NC_028931_p57 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 41613 43100
YP_009210638.1 NC_028931_p26 hypothetical protein phrog_313 Tail assembly chaperone tail 1 20800 21279
YP_009210628.1 NC_028931_p16 hypothetical protein singleton unknown function unknown function -1 15208 15603
YP_009210666.1 NC_028931_p54 hypothetical protein phrog_2053 unknown function unknown function -1 39660 39887
YP_009210670.1 NC_028931_p58 hypothetical protein phrog_25007 unknown function unknown function -1 43093 43302
YP_009210615.1 NC_028931_p3 hypothetical protein singleton unknown function unknown function 1 1264 1503
YP_009210680.1 NC_028931_p68 nucleotide triphosphate hydrolase phrog_10855 hydrolase other -1 48517 49059
YP_009210649.1 NC_028931_p37 endolysin phrog_465 endolysin lysis 1 31551 32051
YP_009210650.1 NC_028931_p38 virion structural protein phrog_739 Rz-like spanin lysis 1 32062 32547
YP_009210675.1 NC_028931_p63 hypothetical protein phrog_7860 unknown function unknown function -1 46587 46778
YP_009210665.1 NC_028931_p53 nucleotide pyrophosphohydrolase phrog_18404 hydrolase other -1 38778 39575
YP_009210678.1 NC_028931_p66 DNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 47505 48098
YP_009210679.1 NC_028931_p67 hypothetical protein phrog_464 unknown function unknown function -1 48230 48523
YP_009210644.1 NC_028931_p32 hypothetical protein phrog_1196 tail assembly chaperone tail 1 26875 27075
YP_009210645.1 NC_028931_p33 virion structural protein phrog_1101 tail protein tail 1 27059 29896
YP_009210642.1 NC_028931_p30 virion structural protein phrog_15205 tail assembly protein tail 1 25170 26621
YP_009210682.1 NC_028931_p70 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 49761 51290
YP_009210667.1 NC_028931_p55 hypothetical protein phrog_11422 unknown function unknown function -1 39884 40891
YP_009210620.1 NC_028931_p8 portal protein phrog_145 portal protein head and packaging 1 6457 7986
YP_009210674.1 NC_028931_p62 hypothetical protein phrog_18640 unknown function unknown function -1 46261 46590
YP_009210648.1 NC_028931_p36 hypothetical protein phrog_14936 unknown function unknown function 1 31243 31554
YP_009210634.1 NC_028931_p22 virion structural protein phrog_161 head closure Hc1 connector 1 18614 18976
YP_009210676.1 NC_028931_p64 hypothetical protein phrog_29767 unknown function unknown function -1 46775 47035
YP_009210640.1 NC_028931_p28 tail tape measure protein phrog_1538 tail length tape measure protein tail 1 21513 24011
YP_009210663.1 NC_028931_p51 hypothetical protein phrog_3322 endonuclease DNA, RNA and nucleotide metabolism -1 37395 37811
YP_009210686.1 NC_028931_p74 primase/polymerase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 52370 54709
YP_009210660.1 NC_028931_p48 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism -1 36022 36420
YP_009210656.1 NC_028931_p44 hypothetical protein phrog_17853 unknown function unknown function -1 33814 34110
YP_009210619.1 NC_028931_p7 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 5481 6374
YP_009210618.1 NC_028931_p6 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 3673 5400
YP_009210683.1 NC_028931_p71 hypothetical protein phrog_17764 unknown function unknown function -1 51290 51556
YP_009210639.1 NC_028931_p27 hypothetical protein singleton unknown function unknown function 1 21386 21586
YP_009210635.1 NC_028931_p23 virion structural protein phrog_169 tail completion or Neck1 protein connector 1 18979 19380
YP_009210621.1 NC_028931_p9 hypothetical protein phrog_3322 endonuclease DNA, RNA and nucleotide metabolism 1 7990 8490
YP_009210647.1 NC_028931_p35 virion structural protein phrog_5363 unknown function unknown function 1 30817 31179
YP_009210630.1 NC_028931_p18 hypothetical protein singleton unknown function unknown function -1 15837 16064
YP_009210684.1 NC_028931_p72 hypothetical protein phrog_18196 unknown function unknown function -1 51558 51986
YP_009210633.1 NC_028931_p21 virion structural protein phrog_477 head-tail adaptor Ad1 connector 1 18095 18610
YP_009210632.1 NC_028931_p20 hypothetical protein phrog_6213 unknown function unknown function 1 17628 18086
YP_009210681.1 NC_028931_p69 hypothetical protein phrog_17547 unknown function unknown function -1 49056 49688
YP_009210659.1 NC_028931_p47 hypothetical protein phrog_17767 unknown function unknown function -1 35066 35836
YP_009210672.1 NC_028931_p60 hypothetical protein phrog_18147 unknown function unknown function -1 45615 46010
YP_009210626.1 NC_028931_p14 hypothetical protein phrog_18209 unknown function unknown function -1 13854 14597
YP_009210668.1 NC_028931_p56 hypothetical protein phrog_17205 unknown function unknown function -1 40991 41470
YP_009210641.1 NC_028931_p29 virion structural protein phrog_1082 tail assembly protein tail 1 24013 25173
YP_009210652.1 NC_028931_p40 hypothetical protein phrog_6420 unknown function unknown function 1 32725 32997
YP_009210671.1 NC_028931_p59 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 43310 45583
YP_009210655.1 NC_028931_p43 hypothetical protein phrog_8293 unknown function unknown function -1 33538 33789
YP_009210637.1 NC_028931_p25 major tail structural protein phrog_290 minor tail protein tail 1 19856 20770