Genomic map of Pseudomonas phage PhiCHU (NC_028933)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028933
Definition
Pseudomonas phage PhiCHU, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Bruynoghevirus.
DB of origin
REFSEQ
Length
45626
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
73
%GC
52.02
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009210802.1 NC_028933_p19 hypothetical protein phrog_11110 unknown function unknown function 1 5964 6164
YP_009210795.1 NC_028933_p12 hypothetical protein phrog_16829 unknown function unknown function 1 4070 4225
YP_009210818.1 NC_028933_p35 hypothetical protein phrog_11010 unknown function unknown function 1 17367 17579
YP_009210801.1 NC_028933_p18 hypothetical protein phrog_8299 unknown function unknown function 1 5427 5837
YP_009210845.1 NC_028933_p62 tail constituent protein phrog_5795 tail protein tail -1 35887 36534
YP_009210808.1 NC_028933_p25 hypothetical protein phrog_4877 unknown function unknown function 1 9785 10363
YP_009210835.1 NC_028933_p52 hypothetical protein phrog_12822 unknown function unknown function 1 25499 25741
YP_009210851.1 NC_028933_p68 scaffold protein phrog_3927 head scaffolding protein head and packaging -1 38927 39931
YP_009210815.1 NC_028933_p32 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 15098 16807
YP_009210853.1 NC_028933_p70 portal protein phrog_1216 portal protein head and packaging -1 40176 42293
YP_009210790.1 NC_028933_p7 hypothetical protein phrog_8365 unknown function unknown function 1 2815 3048
YP_009210789.1 NC_028933_p6 hypothetical protein phrog_10887 unknown function unknown function 1 2181 2321
YP_009210843.1 NC_028933_p60 hypothetical protein phrog_8092 unknown function unknown function -1 33651 34340
YP_009210832.1 NC_028933_p49 hypothetical protein phrog_9960 unknown function unknown function 1 24809 24964
YP_009210809.1 NC_028933_p26 hypothetical protein phrog_7631 amidoligase enzyme other 1 10342 11538
YP_009210850.1 NC_028933_p67 major capsid protein phrog_1328 major head protein head and packaging -1 37955 38908
YP_009210785.1 NC_028933_p2 hypothetical protein phrog_26227 unknown function unknown function 1 1012 1182
YP_009210824.1 NC_028933_p41 DNA polymerase II phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 18957 20594
YP_009210803.1 NC_028933_p20 hypothetical protein phrog_20462 unknown function unknown function 1 6161 6613
YP_009210833.1 NC_028933_p50 hypothetical protein phrog_2251 unknown function unknown function 1 24967 25176
YP_009210846.1 NC_028933_p63 hypothetical protein phrog_8140 unknown function unknown function -1 36524 36772
YP_009210821.1 NC_028933_p38 holin phrog_7045 holin lysis 1 17947 18231
YP_009210806.1 NC_028933_p23 hypothetical protein phrog_7973 unknown function unknown function 1 8028 8975
YP_009210856.1 NC_028933_p73 terminase small subunit phrog_51 terminase small subunit head and packaging -1 44172 44630
YP_009210820.1 NC_028933_p37 hypothetical protein phrog_9555 unknown function unknown function 1 17792 17956
YP_009210819.1 NC_028933_p36 hypothetical protein phrog_9813 unknown function unknown function 1 17611 17802
YP_009210812.1 NC_028933_p29 hypothetical protein phrog_2599 ribosomal protein S6 glutaminyl transferase moron, auxiliary metabolic gene and host takeover 1 13459 14349
YP_009210827.1 NC_028933_p44 hypothetical protein phrog_8565 unknown function unknown function 1 21677 21970
YP_009210826.1 NC_028933_p43 hypothetical protein phrog_5033 endolysin; inhibits RNA polymerase lysis 1 21121 21705
YP_009210838.1 NC_028933_p55 hypothetical protein phrog_6958 virion structural protein head and packaging -1 27058 30228
YP_009210844.1 NC_028933_p61 hypothetical protein phrog_3287 virion structural protein head and packaging -1 34337 35878
YP_009210823.1 NC_028933_p40 hypothetical protein phrog_9754 unknown function unknown function 1 18759 18956
YP_009210813.1 NC_028933_p30 gamma-glutamyl cyclotransferase phrog_2520 gamma-glutamyl cyclotransferase moron, auxiliary metabolic gene and host takeover 1 14349 14738
YP_009210842.1 NC_028933_p59 hypothetical protein phrog_7642 unknown function unknown function -1 33220 33654
YP_009210836.1 NC_028933_p53 hypothetical protein phrog_8259 unknown function unknown function -1 25789 26145
YP_009210788.1 NC_028933_p5 hypothetical protein phrog_9596 unknown function unknown function 1 1966 2184
YP_009210814.1 NC_028933_p31 hypothetical protein phrog_8197 unknown function unknown function 1 14735 15097
YP_009210810.1 NC_028933_p27 L-glutamine-D-fructose-6-phosphate amidotransferase phrog_4736 L-glutamine-D-fructose-6-phosphate aminotransferase other 1 11551 13104
YP_009210847.1 NC_028933_p64 hypothetical protein phrog_22224 unknown function unknown function -1 36756 37115
YP_009210854.1 NC_028933_p71 terminase large subunit phrog_2 terminase large subunit head and packaging -1 42294 43742
YP_009210800.1 NC_028933_p17 hypothetical protein phrog_4955 unknown function unknown function 1 5158 5430
YP_009210849.1 NC_028933_p66 hypothetical protein phrog_3982 unknown function unknown function -1 37587 37907
YP_009210786.1 NC_028933_p3 hypothetical protein phrog_1448 unknown function unknown function 1 1200 1754
YP_009210805.1 NC_028933_p22 hypothetical protein phrog_9504 unknown function unknown function 1 6901 8025
YP_009210841.1 NC_028933_p58 tail constituent protein phrog_7477 unknown function unknown function -1 32295 33239
YP_009210787.1 NC_028933_p4 hypothetical protein phrog_30176 unknown function unknown function 1 1754 1897
YP_009210837.1 NC_028933_p54 hypothetical protein phrog_8295 virion structural protein head and packaging -1 26160 27164
YP_009210811.1 NC_028933_p28 hypothetical protein phrog_9335 unknown function unknown function 1 13114 13332
YP_009210807.1 NC_028933_p24 hypothetical protein phrog_3815 COOH.NH2 ligase other 1 8986 9792
YP_009210840.1 NC_028933_p57 hypothetical protein phrog_9927 virion structural protein head and packaging -1 31912 32295
YP_009210791.1 NC_028933_p8 hypothetical protein phrog_20857 unknown function unknown function 1 3051 3281
YP_009210797.1 NC_028933_p14 hypothetical protein phrog_10516 unknown function unknown function 1 4367 4624
YP_009210792.1 NC_028933_p9 hypothetical protein phrog_24677 unknown function unknown function 1 3278 3526
YP_009210816.1 NC_028933_p33 DNA polymerase I phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 16770 17297
YP_009210799.1 NC_028933_p16 hypothetical protein phrog_11608 unknown function unknown function 1 4895 5158
YP_009210855.1 NC_028933_p72 lysozyme phrog_7 endolysin lysis -1 43742 44239
YP_009210852.1 NC_028933_p69 hypothetical protein phrog_8161 unknown function unknown function -1 39931 40122
YP_009210804.1 NC_028933_p21 hypothetical protein phrog_14798 unknown function unknown function 1 6620 6949
YP_009210796.1 NC_028933_p13 hypothetical protein phrog_11682 unknown function unknown function 1 4212 4358
YP_009210829.1 NC_028933_p46 hypothetical protein phrog_7967 unknown function unknown function 1 22813 23793
YP_009210798.1 NC_028933_p15 hypothetical protein phrog_9861 unknown function unknown function 1 4614 4895
YP_009210784.1 NC_028933_p1 hypothetical protein phrog_34855 unknown function unknown function 1 412 579
YP_009210793.1 NC_028933_p10 hypothetical protein phrog_23405 unknown function unknown function 1 3501 3782
YP_009210794.1 NC_028933_p11 hypothetical protein phrog_14185 unknown function unknown function 1 3784 4059
YP_009210817.1 NC_028933_p34 hypothetical protein phrog_4590 unknown function unknown function 1 17267 17575
YP_009210848.1 NC_028933_p65 hypothetical protein phrog_2941 virion structural protein head and packaging -1 36958 37584
YP_009210828.1 NC_028933_p45 5' - 3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 21954 22838
YP_009210839.1 NC_028933_p56 hypothetical protein phrog_7725 virion structural protein head and packaging -1 30384 31907
YP_009210822.1 NC_028933_p39 hypothetical protein phrog_7819 tail length tape measure protein tail 1 18132 18638
YP_009210831.1 NC_028933_p48 hypothetical protein phrog_221 metallo-phosphoesterase other 1 23988 24749
YP_009210825.1 NC_028933_p42 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 20664 21224
YP_009210834.1 NC_028933_p51 hypothetical protein phrog_8402 unknown function unknown function 1 25130 25369
YP_009210830.1 NC_028933_p47 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 23648 23995