| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028933 |
Definition |
Pseudomonas phage PhiCHU, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Bruynoghevirus. |
DB of origin |
REFSEQ |
Length |
45626 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
73 |
%GC |
52.02 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009210802.1 | NC_028933_p19 | hypothetical protein | phrog_11110 | unknown function | unknown function | 1 | 5964 | 6164 |
| YP_009210795.1 | NC_028933_p12 | hypothetical protein | phrog_16829 | unknown function | unknown function | 1 | 4070 | 4225 |
| YP_009210818.1 | NC_028933_p35 | hypothetical protein | phrog_11010 | unknown function | unknown function | 1 | 17367 | 17579 |
| YP_009210801.1 | NC_028933_p18 | hypothetical protein | phrog_8299 | unknown function | unknown function | 1 | 5427 | 5837 |
| YP_009210845.1 | NC_028933_p62 | tail constituent protein | phrog_5795 | tail protein | tail | -1 | 35887 | 36534 |
| YP_009210808.1 | NC_028933_p25 | hypothetical protein | phrog_4877 | unknown function | unknown function | 1 | 9785 | 10363 |
| YP_009210835.1 | NC_028933_p52 | hypothetical protein | phrog_12822 | unknown function | unknown function | 1 | 25499 | 25741 |
| YP_009210851.1 | NC_028933_p68 | scaffold protein | phrog_3927 | head scaffolding protein | head and packaging | -1 | 38927 | 39931 |
| YP_009210815.1 | NC_028933_p32 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 15098 | 16807 |
| YP_009210853.1 | NC_028933_p70 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 40176 | 42293 |
| YP_009210790.1 | NC_028933_p7 | hypothetical protein | phrog_8365 | unknown function | unknown function | 1 | 2815 | 3048 |
| YP_009210789.1 | NC_028933_p6 | hypothetical protein | phrog_10887 | unknown function | unknown function | 1 | 2181 | 2321 |
| YP_009210843.1 | NC_028933_p60 | hypothetical protein | phrog_8092 | unknown function | unknown function | -1 | 33651 | 34340 |
| YP_009210832.1 | NC_028933_p49 | hypothetical protein | phrog_9960 | unknown function | unknown function | 1 | 24809 | 24964 |
| YP_009210809.1 | NC_028933_p26 | hypothetical protein | phrog_7631 | amidoligase enzyme | other | 1 | 10342 | 11538 |
| YP_009210850.1 | NC_028933_p67 | major capsid protein | phrog_1328 | major head protein | head and packaging | -1 | 37955 | 38908 |
| YP_009210785.1 | NC_028933_p2 | hypothetical protein | phrog_26227 | unknown function | unknown function | 1 | 1012 | 1182 |
| YP_009210824.1 | NC_028933_p41 | DNA polymerase II | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18957 | 20594 |
| YP_009210803.1 | NC_028933_p20 | hypothetical protein | phrog_20462 | unknown function | unknown function | 1 | 6161 | 6613 |
| YP_009210833.1 | NC_028933_p50 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 24967 | 25176 |
| YP_009210846.1 | NC_028933_p63 | hypothetical protein | phrog_8140 | unknown function | unknown function | -1 | 36524 | 36772 |
| YP_009210821.1 | NC_028933_p38 | holin | phrog_7045 | holin | lysis | 1 | 17947 | 18231 |
| YP_009210806.1 | NC_028933_p23 | hypothetical protein | phrog_7973 | unknown function | unknown function | 1 | 8028 | 8975 |
| YP_009210856.1 | NC_028933_p73 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 44172 | 44630 |
| YP_009210820.1 | NC_028933_p37 | hypothetical protein | phrog_9555 | unknown function | unknown function | 1 | 17792 | 17956 |
| YP_009210819.1 | NC_028933_p36 | hypothetical protein | phrog_9813 | unknown function | unknown function | 1 | 17611 | 17802 |
| YP_009210812.1 | NC_028933_p29 | hypothetical protein | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 13459 | 14349 |
| YP_009210827.1 | NC_028933_p44 | hypothetical protein | phrog_8565 | unknown function | unknown function | 1 | 21677 | 21970 |
| YP_009210826.1 | NC_028933_p43 | hypothetical protein | phrog_5033 | endolysin; inhibits RNA polymerase | lysis | 1 | 21121 | 21705 |
| YP_009210838.1 | NC_028933_p55 | hypothetical protein | phrog_6958 | virion structural protein | head and packaging | -1 | 27058 | 30228 |
| YP_009210844.1 | NC_028933_p61 | hypothetical protein | phrog_3287 | virion structural protein | head and packaging | -1 | 34337 | 35878 |
| YP_009210823.1 | NC_028933_p40 | hypothetical protein | phrog_9754 | unknown function | unknown function | 1 | 18759 | 18956 |
| YP_009210813.1 | NC_028933_p30 | gamma-glutamyl cyclotransferase | phrog_2520 | gamma-glutamyl cyclotransferase | moron, auxiliary metabolic gene and host takeover | 1 | 14349 | 14738 |
| YP_009210842.1 | NC_028933_p59 | hypothetical protein | phrog_7642 | unknown function | unknown function | -1 | 33220 | 33654 |
| YP_009210836.1 | NC_028933_p53 | hypothetical protein | phrog_8259 | unknown function | unknown function | -1 | 25789 | 26145 |
| YP_009210788.1 | NC_028933_p5 | hypothetical protein | phrog_9596 | unknown function | unknown function | 1 | 1966 | 2184 |
| YP_009210814.1 | NC_028933_p31 | hypothetical protein | phrog_8197 | unknown function | unknown function | 1 | 14735 | 15097 |
| YP_009210810.1 | NC_028933_p27 | L-glutamine-D-fructose-6-phosphate amidotransferase | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | 1 | 11551 | 13104 |
| YP_009210847.1 | NC_028933_p64 | hypothetical protein | phrog_22224 | unknown function | unknown function | -1 | 36756 | 37115 |
| YP_009210854.1 | NC_028933_p71 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 42294 | 43742 |
| YP_009210800.1 | NC_028933_p17 | hypothetical protein | phrog_4955 | unknown function | unknown function | 1 | 5158 | 5430 |
| YP_009210849.1 | NC_028933_p66 | hypothetical protein | phrog_3982 | unknown function | unknown function | -1 | 37587 | 37907 |
| YP_009210786.1 | NC_028933_p3 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1200 | 1754 |
| YP_009210805.1 | NC_028933_p22 | hypothetical protein | phrog_9504 | unknown function | unknown function | 1 | 6901 | 8025 |
| YP_009210841.1 | NC_028933_p58 | tail constituent protein | phrog_7477 | unknown function | unknown function | -1 | 32295 | 33239 |
| YP_009210787.1 | NC_028933_p4 | hypothetical protein | phrog_30176 | unknown function | unknown function | 1 | 1754 | 1897 |
| YP_009210837.1 | NC_028933_p54 | hypothetical protein | phrog_8295 | virion structural protein | head and packaging | -1 | 26160 | 27164 |
| YP_009210811.1 | NC_028933_p28 | hypothetical protein | phrog_9335 | unknown function | unknown function | 1 | 13114 | 13332 |
| YP_009210807.1 | NC_028933_p24 | hypothetical protein | phrog_3815 | COOH.NH2 ligase | other | 1 | 8986 | 9792 |
| YP_009210840.1 | NC_028933_p57 | hypothetical protein | phrog_9927 | virion structural protein | head and packaging | -1 | 31912 | 32295 |
| YP_009210791.1 | NC_028933_p8 | hypothetical protein | phrog_20857 | unknown function | unknown function | 1 | 3051 | 3281 |
| YP_009210797.1 | NC_028933_p14 | hypothetical protein | phrog_10516 | unknown function | unknown function | 1 | 4367 | 4624 |
| YP_009210792.1 | NC_028933_p9 | hypothetical protein | phrog_24677 | unknown function | unknown function | 1 | 3278 | 3526 |
| YP_009210816.1 | NC_028933_p33 | DNA polymerase I | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16770 | 17297 |
| YP_009210799.1 | NC_028933_p16 | hypothetical protein | phrog_11608 | unknown function | unknown function | 1 | 4895 | 5158 |
| YP_009210855.1 | NC_028933_p72 | lysozyme | phrog_7 | endolysin | lysis | -1 | 43742 | 44239 |
| YP_009210852.1 | NC_028933_p69 | hypothetical protein | phrog_8161 | unknown function | unknown function | -1 | 39931 | 40122 |
| YP_009210804.1 | NC_028933_p21 | hypothetical protein | phrog_14798 | unknown function | unknown function | 1 | 6620 | 6949 |
| YP_009210796.1 | NC_028933_p13 | hypothetical protein | phrog_11682 | unknown function | unknown function | 1 | 4212 | 4358 |
| YP_009210829.1 | NC_028933_p46 | hypothetical protein | phrog_7967 | unknown function | unknown function | 1 | 22813 | 23793 |
| YP_009210798.1 | NC_028933_p15 | hypothetical protein | phrog_9861 | unknown function | unknown function | 1 | 4614 | 4895 |
| YP_009210784.1 | NC_028933_p1 | hypothetical protein | phrog_34855 | unknown function | unknown function | 1 | 412 | 579 |
| YP_009210793.1 | NC_028933_p10 | hypothetical protein | phrog_23405 | unknown function | unknown function | 1 | 3501 | 3782 |
| YP_009210794.1 | NC_028933_p11 | hypothetical protein | phrog_14185 | unknown function | unknown function | 1 | 3784 | 4059 |
| YP_009210817.1 | NC_028933_p34 | hypothetical protein | phrog_4590 | unknown function | unknown function | 1 | 17267 | 17575 |
| YP_009210848.1 | NC_028933_p65 | hypothetical protein | phrog_2941 | virion structural protein | head and packaging | -1 | 36958 | 37584 |
| YP_009210828.1 | NC_028933_p45 | 5' - 3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 21954 | 22838 |
| YP_009210839.1 | NC_028933_p56 | hypothetical protein | phrog_7725 | virion structural protein | head and packaging | -1 | 30384 | 31907 |
| YP_009210822.1 | NC_028933_p39 | hypothetical protein | phrog_7819 | tail length tape measure protein | tail | 1 | 18132 | 18638 |
| YP_009210831.1 | NC_028933_p48 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 23988 | 24749 |
| YP_009210825.1 | NC_028933_p42 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 20664 | 21224 |
| YP_009210834.1 | NC_028933_p51 | hypothetical protein | phrog_8402 | unknown function | unknown function | 1 | 25130 | 25369 |
| YP_009210830.1 | NC_028933_p47 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23648 | 23995 |