| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028941 |
Definition |
Mycobacterium phage Turj99, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51161 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
63.74 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009211747.1 | NC_028941_p35 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28874 | 29158 |
| YP_009211798.1 | NC_028941_p86 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50560 | 50763 |
| YP_009211730.1 | NC_028941_p18 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13470 | 13865 |
| YP_009211781.1 | NC_028941_p69 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45023 | 45346 |
| YP_009211756.1 | NC_028941_p44 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34287 | 34778 |
| YP_009211786.1 | NC_028941_p74 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47010 | 47279 |
| YP_009211728.1 | NC_028941_p16 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12659 | 13108 |
| YP_009211797.1 | NC_028941_p85 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 50367 | 50450 |
| YP_009211783.1 | NC_028941_p71 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45780 | 46466 |
| YP_009211754.1 | NC_028941_p42 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32163 | 33989 |
| YP_009211788.1 | NC_028941_p76 | hypothetical protein | phrog_5429 | DNA repair protein | DNA, RNA and nucleotide metabolism | -1 | 47476 | 47985 |
| YP_009211734.1 | NC_028941_p22 | tail assembly chaperone protein | phrog_330 | tail assembly chaperone | tail | 1 | 15197 | 15673 |
| YP_009211714.1 | NC_028941_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 929 | 1369 |
| YP_009211793.1 | NC_028941_p81 | hypothetical protein | phrog_18281 | unknown function | unknown function | -1 | 48903 | 49115 |
| YP_009211780.1 | NC_028941_p68 | hypothetical protein | phrog_13709 | unknown function | unknown function | -1 | 44811 | 45026 |
| YP_009211743.1 | NC_028941_p31 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25705 | 27183 |
| YP_009211794.1 | NC_028941_p82 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 49182 | 49466 |
| YP_009211777.1 | NC_028941_p65 | helix-turn-helix DNA binding domain protein | phrog_2184 | unknown function | unknown function | -1 | 43463 | 43783 |
| YP_009211744.1 | NC_028941_p32 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27276 | 27596 |
| YP_009211758.1 | NC_028941_p46 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 34954 | 35202 |
| YP_009211737.1 | NC_028941_p25 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 20678 | 20860 |
| YP_009211762.1 | NC_028941_p50 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36279 | 37997 |
| YP_009211736.1 | NC_028941_p24 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18602 | 20659 |
| YP_009211724.1 | NC_028941_p12 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9878 | 10759 |
| YP_009211784.1 | NC_028941_p72 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46554 | 46853 |
| YP_009211732.1 | NC_028941_p20 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14324 | 15175 |
| YP_009211729.1 | NC_028941_p17 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13108 | 13470 |
| YP_009211770.1 | NC_028941_p58 | hypothetical protein | phrog_14414 | unknown function | unknown function | -1 | 41434 | 41634 |
| YP_009211755.1 | NC_028941_p43 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34026 | 34256 |
| YP_009211746.1 | NC_028941_p34 | hypothetical protein | phrog_12500 | minor tail protein | tail | 1 | 27794 | 28738 |
| YP_009211719.1 | NC_028941_p7 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4086 | 4343 |
| YP_009211739.1 | NC_028941_p27 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22700 | 23146 |
| YP_009211715.1 | NC_028941_p3 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1541 | 1753 |
| YP_009211716.1 | NC_028941_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2014 | 3084 |
| YP_009211723.1 | NC_028941_p11 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8439 | 9881 |
| YP_009211761.1 | NC_028941_p49 | recombination directionality factor | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36134 | 36274 |
| YP_009211768.1 | NC_028941_p56 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40753 | 40896 |
| YP_009211718.1 | NC_028941_p6 | structural protein | phrog_1718 | tail protein | tail | 1 | 3818 | 4078 |
| YP_009211767.1 | NC_028941_p55 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 40682 | 40765 |
| YP_009211749.1 | NC_028941_p37 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 30986 | 31258 |
| YP_009211740.1 | NC_028941_p28 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23158 | 23490 |
| YP_009211722.1 | NC_028941_p10 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6754 | 8442 |
| YP_009211791.1 | NC_028941_p79 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48334 | 48462 |
| YP_009211727.1 | NC_028941_p15 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12423 | 12659 |
| YP_009211735.1 | NC_028941_p23 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16107 | 18578 |
| YP_009211760.1 | NC_028941_p48 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35350 | 36141 |
| YP_009211779.1 | NC_028941_p67 | RecB exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43996 | 44832 |
| YP_009211751.1 | NC_028941_p39 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31434 | 31529 |
| YP_009211731.1 | NC_028941_p19 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13869 | 14315 |
| YP_009211795.1 | NC_028941_p83 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 49736 | 49891 |
| YP_009211733.1 | NC_028941_p21 | hypothetical protein | phrog_393 | tail assembly chaperone | tail | 1 | 15197 | 16095 |
| YP_009211741.1 | NC_028941_p29 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23487 | 23834 |
| YP_009211773.1 | NC_028941_p61 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42063 | 42884 |
| YP_009211745.1 | NC_028941_p33 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27606 | 27797 |
| YP_009211790.1 | NC_028941_p78 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48170 | 48337 |
| YP_009211792.1 | NC_028941_p80 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48484 | 48633 |
| YP_009211720.1 | NC_028941_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4343 | 5776 |
| YP_009211789.1 | NC_028941_p77 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47982 | 48170 |
| YP_009211753.1 | NC_028941_p41 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 31786 | 32142 |
| YP_009211778.1 | NC_028941_p66 | helix-turn-helix DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43787 | 43969 |
| YP_009211763.1 | NC_028941_p51 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37994 | 38173 |
| YP_009211759.1 | NC_028941_p47 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35192 | 35353 |
| YP_009211775.1 | NC_028941_p63 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43057 | 43176 |
| YP_009211742.1 | NC_028941_p30 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 23859 | 25712 |
| YP_009211717.1 | NC_028941_p5 | structural protein | phrog_553 | minor tail protein | tail | 1 | 3094 | 3804 |
| YP_009211725.1 | NC_028941_p13 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10817 | 11329 |
| YP_009211748.1 | NC_028941_p36 | integrase | phrog_95 | integrase | integration and excision | 1 | 29282 | 30865 |
| YP_009211713.1 | NC_028941_p1 | WhiB/HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 598 | 894 |
| YP_009211782.1 | NC_028941_p70 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45343 | 45738 |
| YP_009211785.1 | NC_028941_p73 | hypothetical protein | phrog_8497 | unknown function | unknown function | -1 | 46846 | 47013 |
| YP_009211774.1 | NC_028941_p62 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42884 | 43060 |
| YP_009211726.1 | NC_028941_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11339 | 12337 |
| YP_009211771.1 | NC_028941_p59 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41714 | 41800 |
| YP_009211796.1 | NC_028941_p84 | hypothetical protein | phrog_10288 | unknown function | unknown function | -1 | 50099 | 50338 |
| YP_009211738.1 | NC_028941_p26 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20860 | 22662 |
| YP_009211772.1 | NC_028941_p60 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41797 | 42063 |
| YP_009211757.1 | NC_028941_p45 | hypothetical protein | phrog_14562 | unknown function | unknown function | -1 | 34775 | 34954 |
| YP_009211752.1 | NC_028941_p40 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31526 | 31789 |
| YP_009211787.1 | NC_028941_p75 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47276 | 47479 |
| YP_009211769.1 | NC_028941_p57 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40915 | 41394 |
| YP_009211721.1 | NC_028941_p9 | lysin B | phrog_102 | endolysin | lysis | 1 | 5766 | 6734 |
| YP_009211764.1 | NC_028941_p52 | primase | phrog_1167 | phosphofructokinase | other | -1 | 38170 | 38730 |
| YP_009211765.1 | NC_028941_p53 | intein-containing topoisomerase primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38694 | 40268 |
| YP_009211776.1 | NC_028941_p64 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43173 | 43466 |
| YP_009211766.1 | NC_028941_p54 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40521 | 40685 |
| YP_009211750.1 | NC_028941_p38 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31255 | 31437 |