| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028947 |
Definition |
Mycobacterium phage Kratio, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
62738 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
65.66 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009212823.1 | NC_028947_p76 | hypothetical protein | phrog_8324 | unknown function | unknown function | 1 | 51094 | 51327 |
| YP_009212794.1 | NC_028947_p47 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 37190 | 37468 |
| YP_009212761.1 | NC_028947_p14 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10255 | 10866 |
| YP_009212805.1 | NC_028947_p58 | hypothetical protein | phrog_10696 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40754 | 41233 |
| YP_009212763.1 | NC_028947_p16 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10964 | 11455 |
| YP_009212819.1 | NC_028947_p72 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 49330 | 50199 |
| YP_009212750.1 | NC_028947_p3 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 736 | 1095 |
| YP_009212840.1 | NC_028947_p93 | hypothetical protein | phrog_6842 | unknown function | unknown function | 1 | 59262 | 59591 |
| YP_009212772.1 | NC_028947_p25 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23714 | 24778 |
| YP_009212826.1 | NC_028947_p79 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 52503 | 53210 |
| YP_009212831.1 | NC_028947_p84 | hypothetical protein | phrog_19470 | unknown function | unknown function | 1 | 54632 | 54784 |
| YP_009212748.1 | NC_028947_p1 | hypothetical protein | phrog_10556 | unknown function | unknown function | 1 | 54 | 302 |
| YP_009212799.1 | NC_028947_p52 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38274 | 39134 |
| YP_009212762.1 | NC_028947_p15 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10964 | 11850 |
| YP_009212778.1 | NC_028947_p31 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28395 | 28646 |
| YP_009212835.1 | NC_028947_p88 | hypothetical protein | phrog_9985 | unknown function | unknown function | 1 | 56233 | 56511 |
| YP_009212774.1 | NC_028947_p27 | lysin A | phrog_317 | endolysin | lysis | 1 | 25231 | 26865 |
| YP_009212814.1 | NC_028947_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47750 | 48187 |
| YP_009212829.1 | NC_028947_p82 | hypothetical protein | phrog_980 | unknown function | unknown function | 1 | 54079 | 54366 |
| YP_009212837.1 | NC_028947_p90 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 57046 | 57732 |
| YP_009212782.1 | NC_028947_p35 | hypothetical protein | phrog_21189 | hydrolase | other | -1 | 30771 | 30902 |
| YP_009212836.1 | NC_028947_p89 | hypothetical protein | phrog_10190 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 56513 | 56911 |
| YP_009212832.1 | NC_028947_p85 | hypothetical protein | phrog_19954 | unknown function | unknown function | 1 | 54819 | 54986 |
| YP_009212780.1 | NC_028947_p33 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 29847 | 30071 |
| YP_009212760.1 | NC_028947_p13 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9789 | 10211 |
| YP_009212758.1 | NC_028947_p11 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 9192 | 9554 |
| YP_009212795.1 | NC_028947_p48 | hypothetical protein | phrog_10462 | unknown function | unknown function | 1 | 37465 | 37620 |
| YP_009212834.1 | NC_028947_p87 | hypothetical protein | phrog_20186 | unknown function | unknown function | 1 | 55989 | 56168 |
| YP_009212803.1 | NC_028947_p56 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 39821 | 40396 |
| YP_009212766.1 | NC_028947_p19 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 17226 | 18998 |
| YP_009212839.1 | NC_028947_p92 | hypothetical protein | phrog_7638 | unknown function | unknown function | 1 | 58177 | 59052 |
| YP_009212817.1 | NC_028947_p70 | hypothetical protein | phrog_11424 | unknown function | unknown function | 1 | 48852 | 49022 |
| YP_009212812.1 | NC_028947_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47196 | 47399 |
| YP_009212764.1 | NC_028947_p17 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 11868 | 15977 |
| YP_009212789.1 | NC_028947_p42 | hypothetical protein | phrog_11593 | unknown function | unknown function | 1 | 34940 | 35092 |
| YP_009212798.1 | NC_028947_p51 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 38110 | 38277 |
| YP_009212790.1 | NC_028947_p43 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 35184 | 35939 |
| YP_009212844.1 | NC_028947_p97 | hypothetical protein | phrog_10342 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60761 | 61168 |
| YP_009212845.1 | NC_028947_p98 | hypothetical protein | phrog_10816 | unknown function | unknown function | 1 | 62139 | 62321 |
| YP_009212813.1 | NC_028947_p66 | hypothetical protein | phrog_2287 | unknown function | unknown function | 1 | 47514 | 47717 |
| YP_009212791.1 | NC_028947_p44 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 35977 | 36582 |
| YP_009212842.1 | NC_028947_p95 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 59965 | 60222 |
| YP_009212809.1 | NC_028947_p62 | RusA | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45599 | 45964 |
| YP_009212771.1 | NC_028947_p24 | hypothetical protein | phrog_10753 | unknown function | unknown function | 1 | 23411 | 23695 |
| YP_009212753.1 | NC_028947_p6 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4082 | 6760 |
| YP_009212756.1 | NC_028947_p9 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7731 | 8651 |
| YP_009212838.1 | NC_028947_p91 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 57815 | 58060 |
| YP_009212825.1 | NC_028947_p78 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 52141 | 52503 |
| YP_009212781.1 | NC_028947_p34 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30195 | 30653 |
| YP_009212785.1 | NC_028947_p38 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32701 | 33552 |
| YP_009212770.1 | NC_028947_p23 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 20891 | 23401 |
| YP_009212824.1 | NC_028947_p77 | hypothetical protein | phrog_9980 | unknown function | unknown function | 1 | 51397 | 51987 |
| YP_009212800.1 | NC_028947_p53 | hypothetical protein | phrog_10500 | unknown function | unknown function | 1 | 39131 | 39355 |
| YP_009212759.1 | NC_028947_p12 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9526 | 9792 |
| YP_009212787.1 | NC_028947_p40 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34179 | 34565 |
| YP_009212818.1 | NC_028947_p71 | hypothetical protein | phrog_38067 | unknown function | unknown function | 1 | 49058 | 49333 |
| YP_009212768.1 | NC_028947_p21 | minor tail subunit | phrog_1565 | minor tail protein | tail | 1 | 19505 | 20590 |
| YP_009212806.1 | NC_028947_p59 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41230 | 41610 |
| YP_009212777.1 | NC_028947_p30 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28069 | 28398 |
| YP_009212807.1 | NC_028947_p60 | hypothetical protein | phrog_10729 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 41641 | 43806 |
| YP_009212749.1 | NC_028947_p2 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 299 | 511 |
| YP_009212830.1 | NC_028947_p83 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 54363 | 54506 |
| YP_009212811.1 | NC_028947_p64 | hypothetical protein | phrog_33883 | unknown function | unknown function | 1 | 46855 | 47166 |
| YP_009212776.1 | NC_028947_p29 | holin | phrog_565 | holin | lysis | 1 | 27620 | 28072 |
| YP_009212816.1 | NC_028947_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48508 | 48810 |
| YP_009212752.1 | NC_028947_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2527 | 4065 |
| YP_009212754.1 | NC_028947_p7 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6757 | 6957 |
| YP_009212793.1 | NC_028947_p46 | hypothetical protein | phrog_9124 | unknown function | unknown function | 1 | 36969 | 37193 |
| YP_009212841.1 | NC_028947_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59697 | 59918 |
| YP_009212783.1 | NC_028947_p36 | integrase | phrog_95 | integrase | integration and excision | 1 | 30972 | 32417 |
| YP_009212804.1 | NC_028947_p57 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 40509 | 40757 |
| YP_009212786.1 | NC_028947_p39 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33681 | 34085 |
| YP_009212767.1 | NC_028947_p20 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18999 | 19508 |
| YP_009212779.1 | NC_028947_p32 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28633 | 29847 |
| YP_009212775.1 | NC_028947_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 26874 | 27623 |
| YP_009212788.1 | NC_028947_p41 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 34572 | 34862 |
| YP_009212757.1 | NC_028947_p10 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8728 | 9192 |
| YP_009212796.1 | NC_028947_p49 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 37643 | 37807 |
| YP_009212773.1 | NC_028947_p26 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24805 | 25203 |
| YP_009212815.1 | NC_028947_p68 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 48265 | 48474 |
| YP_009212822.1 | NC_028947_p75 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 50738 | 51097 |
| YP_009212784.1 | NC_028947_p37 | hypothetical protein | phrog_24177 | unknown function | unknown function | 1 | 32535 | 32681 |
| YP_009212821.1 | NC_028947_p74 | hypothetical protein | phrog_2869 | unknown function | unknown function | 1 | 50516 | 50725 |
| YP_009212755.1 | NC_028947_p8 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7091 | 7657 |
| YP_009212769.1 | NC_028947_p22 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20590 | 20907 |
| YP_009212828.1 | NC_028947_p81 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 53417 | 54088 |
| YP_009212792.1 | NC_028947_p45 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 36625 | 36966 |
| YP_009212827.1 | NC_028947_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53212 | 53424 |
| YP_009212833.1 | NC_028947_p86 | queuine tRNA-ribosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55038 | 55922 |
| YP_009212846.1 | NC_028947_p99 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62318 | 62623 |
| YP_009212802.1 | NC_028947_p55 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 39561 | 39740 |
| YP_009212765.1 | NC_028947_p18 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 16054 | 17184 |
| YP_009212797.1 | NC_028947_p50 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 37838 | 38113 |
| YP_009212751.1 | NC_028947_p4 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1088 | 2515 |
| YP_009212843.1 | NC_028947_p96 | hypothetical protein | phrog_8588 | unknown function | unknown function | 1 | 60324 | 60626 |
| YP_009212820.1 | NC_028947_p73 | hypothetical protein | phrog_5135 | unknown function | unknown function | 1 | 50196 | 50531 |
| YP_009212801.1 | NC_028947_p54 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 39352 | 39564 |
| YP_009212810.1 | NC_028947_p63 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 45964 | 46821 |
| YP_009212808.1 | NC_028947_p61 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 43803 | 45518 |