| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028951 |
Definition |
Clostridium phage phiCD481-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
32846 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
30.25 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009213115.1 | NC_028951_p42 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 28344 | 28505 |
| YP_009213084.1 | NC_028951_p11 | hypothetical protein | phrog_365 | tail protein | tail | 1 | 7880 | 8329 |
| YP_009213088.1 | NC_028951_p15 | LysM domain protein | phrog_380 | endolysin | lysis | 1 | 10698 | 11336 |
| YP_009213100.1 | NC_028951_p27 | N-acetylmuramoyl-L-alanine amidase | phrog_3088 | amidase | lysis | 1 | 19007 | 19765 |
| YP_009213127.1 | NC_028951_p54 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32553 | 32846 |
| YP_009213112.1 | NC_028951_p39 | CI phage repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 27014 | 27388 |
| YP_009213074.1 | NC_028951_p1 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 98 | 487 |
| YP_009213087.1 | NC_028951_p14 | hypothetical protein | phrog_991 | tail length tape measure protein | tail | 1 | 8944 | 10698 |
| YP_009213106.1 | NC_028951_p33 | hypothetical protein | phrog_32086 | unknown function | unknown function | -1 | 22430 | 22522 |
| YP_009213099.1 | NC_028951_p26 | holin | phrog_1129 | holin | lysis | 1 | 18750 | 19007 |
| YP_009213090.1 | NC_028951_p17 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 13112 | 13438 |
| YP_009213086.1 | NC_028951_p13 | hypothetical protein | phrog_10264 | unknown function | unknown function | 1 | 8778 | 8951 |
| YP_009213111.1 | NC_028951_p38 | hypothetical protein | phrog_19640 | unknown function | unknown function | 1 | 26867 | 26974 |
| YP_009213076.1 | NC_028951_p3 | Phage portal protein | phrog_12 | portal protein | head and packaging | 1 | 2149 | 3303 |
| YP_009213104.1 | NC_028951_p31 | hypothetical protein | phrog_4741 | unknown function | unknown function | -1 | 21157 | 21489 |
| YP_009213101.1 | NC_028951_p28 | hypothetical protein | phrog_2655 | excisionase | integration and excision | -1 | 19796 | 20002 |
| YP_009213094.1 | NC_028951_p21 | phage tail fiber protein | phrog_2137 | tail fiber protein | tail | 1 | 15536 | 16315 |
| YP_009213105.1 | NC_028951_p32 | para | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 21490 | 22299 |
| YP_009213080.1 | NC_028951_p7 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 5606 | 5944 |
| YP_009213117.1 | NC_028951_p44 | Single-stranded DNA-binding protein 2 | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 28857 | 29252 |
| YP_009213092.1 | NC_028951_p19 | XkdT protein | phrog_6 | baseplate wedge subunit | tail | 1 | 13859 | 14911 |
| YP_009213103.1 | NC_028951_p30 | hypothetical protein | phrog_4021 | unknown function | unknown function | -1 | 20732 | 21013 |
| YP_009213113.1 | NC_028951_p40 | hypothetical protein | phrog_6407 | unknown function | unknown function | 1 | 27564 | 27746 |
| YP_009213118.1 | NC_028951_p45 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 29310 | 29456 |
| YP_009213102.1 | NC_028951_p29 | hypothetical protein | phrog_4337 | unknown function | unknown function | 1 | 20156 | 20626 |
| YP_009213119.1 | NC_028951_p46 | hypothetical protein | phrog_36952 | unknown function | unknown function | 1 | 29453 | 29527 |
| YP_009213089.1 | NC_028951_p16 | NlpC/P60 family protein | phrog_400 | tail protein | tail | 1 | 11576 | 13096 |
| YP_009213107.1 | NC_028951_p34 | hypothetical protein | phrog_738 | unknown function | unknown function | -1 | 22637 | 22744 |
| YP_009213120.1 | NC_028951_p47 | hypothetical protein | phrog_8087 | unknown function | unknown function | 1 | 29566 | 29835 |
| YP_009213079.1 | NC_028951_p6 | Phage DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5317 | 5604 |
| YP_009213116.1 | NC_028951_p43 | hypothetical protein | phrog_12681 | unknown function | unknown function | 1 | 28510 | 28854 |
| YP_009213081.1 | NC_028951_p8 | Phage protein, HK97family | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5937 | 6353 |
| YP_009213125.1 | NC_028951_p52 | Site-specific recombinase, phage integrase family | phrog_216 | integrase | integration and excision | 1 | 31581 | 32141 |
| YP_009213123.1 | NC_028951_p50 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 30926 | 31393 |
| YP_009213122.1 | NC_028951_p49 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 30363 | 30824 |
| YP_009213110.1 | NC_028951_p37 | hypothetical protein | phrog_6335 | unknown function | unknown function | 1 | 26202 | 26540 |
| YP_009213095.1 | NC_028951_p22 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 16333 | 17973 |
| YP_009213075.1 | NC_028951_p2 | phage terminase, large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 484 | 2133 |
| YP_009213082.1 | NC_028951_p9 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 6365 | 6781 |
| YP_009213097.1 | NC_028951_p24 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 18285 | 18467 |
| YP_009213091.1 | NC_028951_p18 | Phage protein XkdS | phrog_120 | baseplate wedge subunit | tail | 1 | 13438 | 13866 |
| YP_009213083.1 | NC_028951_p10 | hypothetical protein | phrog_1480 | tail sheath | tail | 1 | 6799 | 7866 |
| YP_009213114.1 | NC_028951_p41 | hypothetical protein | phrog_4206 | unknown function | unknown function | 1 | 27812 | 28246 |
| YP_009213096.1 | NC_028951_p23 | hypothetical protein | phrog_1626 | rhodanese-related sulfurtransferase | other | 1 | 17986 | 18285 |
| YP_009213124.1 | NC_028951_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31424 | 31612 |
| YP_009213077.1 | NC_028951_p4 | ATP-dependent Clp protease proteolytic subunit | phrog_94 | head maturation protease | head and packaging | 1 | 3309 | 4046 |
| YP_009213126.1 | NC_028951_p53 | hypothetical protein | phrog_10762 | unknown function | unknown function | 1 | 32338 | 32553 |
| YP_009213093.1 | NC_028951_p20 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 14911 | 15519 |
| YP_009213085.1 | NC_028951_p12 | Phage XkdN-like protein | phrog_4976 | tail assembly chaperone | tail | 1 | 8377 | 8760 |
| YP_009213098.1 | NC_028951_p25 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 18503 | 18733 |
| YP_009213078.1 | NC_028951_p5 | Phage capsid family protein | phrog_10 | major head protein | head and packaging | 1 | 4039 | 5307 |
| YP_009213121.1 | NC_028951_p48 | hypothetical protein | phrog_5164 | unknown function | unknown function | 1 | 29854 | 30114 |
| YP_009213108.1 | NC_028951_p35 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 22861 | 23583 |
| YP_009213109.1 | NC_028951_p36 | DNAse/helicase protein | phrog_5173 | unknown function | unknown function | 1 | 24028 | 26181 |