Genomic map of Clostridium phage phiCD481-1 (NC_028951)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028951
Definition
Clostridium phage phiCD481-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
32846
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
30.25
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009213115.1 NC_028951_p42 hypothetical protein phrog_2065 unknown function unknown function 1 28344 28505
YP_009213084.1 NC_028951_p11 hypothetical protein phrog_365 tail protein tail 1 7880 8329
YP_009213088.1 NC_028951_p15 LysM domain protein phrog_380 endolysin lysis 1 10698 11336
YP_009213100.1 NC_028951_p27 N-acetylmuramoyl-L-alanine amidase phrog_3088 amidase lysis 1 19007 19765
YP_009213127.1 NC_028951_p54 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 32553 32846
YP_009213112.1 NC_028951_p39 CI phage repressor phrog_8 transcriptional regulator transcription regulation -1 27014 27388
YP_009213074.1 NC_028951_p1 hypothetical protein phrog_1066 unknown function unknown function 1 98 487
YP_009213087.1 NC_028951_p14 hypothetical protein phrog_991 tail length tape measure protein tail 1 8944 10698
YP_009213106.1 NC_028951_p33 hypothetical protein phrog_32086 unknown function unknown function -1 22430 22522
YP_009213099.1 NC_028951_p26 holin phrog_1129 holin lysis 1 18750 19007
YP_009213090.1 NC_028951_p17 hypothetical protein phrog_579 unknown function unknown function 1 13112 13438
YP_009213086.1 NC_028951_p13 hypothetical protein phrog_10264 unknown function unknown function 1 8778 8951
YP_009213111.1 NC_028951_p38 hypothetical protein phrog_19640 unknown function unknown function 1 26867 26974
YP_009213076.1 NC_028951_p3 Phage portal protein phrog_12 portal protein head and packaging 1 2149 3303
YP_009213104.1 NC_028951_p31 hypothetical protein phrog_4741 unknown function unknown function -1 21157 21489
YP_009213101.1 NC_028951_p28 hypothetical protein phrog_2655 excisionase integration and excision -1 19796 20002
YP_009213094.1 NC_028951_p21 phage tail fiber protein phrog_2137 tail fiber protein tail 1 15536 16315
YP_009213105.1 NC_028951_p32 para phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 21490 22299
YP_009213080.1 NC_028951_p7 phage head-tail adaptor phrog_25 head closure Hc1 connector 1 5606 5944
YP_009213117.1 NC_028951_p44 Single-stranded DNA-binding protein 2 phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 28857 29252
YP_009213092.1 NC_028951_p19 XkdT protein phrog_6 baseplate wedge subunit tail 1 13859 14911
YP_009213103.1 NC_028951_p30 hypothetical protein phrog_4021 unknown function unknown function -1 20732 21013
YP_009213113.1 NC_028951_p40 hypothetical protein phrog_6407 unknown function unknown function 1 27564 27746
YP_009213118.1 NC_028951_p45 hypothetical protein phrog_3794 unknown function unknown function 1 29310 29456
YP_009213102.1 NC_028951_p29 hypothetical protein phrog_4337 unknown function unknown function 1 20156 20626
YP_009213119.1 NC_028951_p46 hypothetical protein phrog_36952 unknown function unknown function 1 29453 29527
YP_009213089.1 NC_028951_p16 NlpC/P60 family protein phrog_400 tail protein tail 1 11576 13096
YP_009213107.1 NC_028951_p34 hypothetical protein phrog_738 unknown function unknown function -1 22637 22744
YP_009213120.1 NC_028951_p47 hypothetical protein phrog_8087 unknown function unknown function 1 29566 29835
YP_009213079.1 NC_028951_p6 Phage DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5317 5604
YP_009213116.1 NC_028951_p43 hypothetical protein phrog_12681 unknown function unknown function 1 28510 28854
YP_009213081.1 NC_028951_p8 Phage protein, HK97family phrog_5 tail completion or Neck1 protein connector 1 5937 6353
YP_009213125.1 NC_028951_p52 Site-specific recombinase, phage integrase family phrog_216 integrase integration and excision 1 31581 32141
YP_009213123.1 NC_028951_p50 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 30926 31393
YP_009213122.1 NC_028951_p49 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 30363 30824
YP_009213110.1 NC_028951_p37 hypothetical protein phrog_6335 unknown function unknown function 1 26202 26540
YP_009213095.1 NC_028951_p22 hypothetical protein phrog_1589 unknown function unknown function 1 16333 17973
YP_009213075.1 NC_028951_p2 phage terminase, large subunit phrog_9 terminase large subunit head and packaging 1 484 2133
YP_009213082.1 NC_028951_p9 hypothetical protein phrog_525 unknown function unknown function 1 6365 6781
YP_009213097.1 NC_028951_p24 hypothetical protein phrog_1243 unknown function unknown function 1 18285 18467
YP_009213091.1 NC_028951_p18 Phage protein XkdS phrog_120 baseplate wedge subunit tail 1 13438 13866
YP_009213083.1 NC_028951_p10 hypothetical protein phrog_1480 tail sheath tail 1 6799 7866
YP_009213114.1 NC_028951_p41 hypothetical protein phrog_4206 unknown function unknown function 1 27812 28246
YP_009213096.1 NC_028951_p23 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 17986 18285
YP_009213124.1 NC_028951_p51 hypothetical protein singleton unknown function unknown function 1 31424 31612
YP_009213077.1 NC_028951_p4 ATP-dependent Clp protease proteolytic subunit phrog_94 head maturation protease head and packaging 1 3309 4046
YP_009213126.1 NC_028951_p53 hypothetical protein phrog_10762 unknown function unknown function 1 32338 32553
YP_009213093.1 NC_028951_p20 hypothetical protein phrog_521 tail protein tail 1 14911 15519
YP_009213085.1 NC_028951_p12 Phage XkdN-like protein phrog_4976 tail assembly chaperone tail 1 8377 8760
YP_009213098.1 NC_028951_p25 hypothetical protein phrog_1193 hemolysin other 1 18503 18733
YP_009213078.1 NC_028951_p5 Phage capsid family protein phrog_10 major head protein head and packaging 1 4039 5307
YP_009213121.1 NC_028951_p48 hypothetical protein phrog_5164 unknown function unknown function 1 29854 30114
YP_009213108.1 NC_028951_p35 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 22861 23583
YP_009213109.1 NC_028951_p36 DNAse/helicase protein phrog_5173 unknown function unknown function 1 24028 26181