| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028952 |
Definition |
Streptomyces phage SF3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
60934 |
Host Name |
Streptomyces flavovirens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
69.11 |
Number of singletons |
24 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009213210.1 | NC_028952_p83 | protein of an unannotated phage | phrog_758 | head morphogenesis | head and packaging | 1 | 55948 | 56844 |
| YP_009213145.1 | NC_028952_p18 | protein of an unannotated phage | phrog_1887 | tail protein | tail | 1 | 14539 | 15684 |
| YP_009213174.1 | NC_028952_p47 | protein of an unannotated phage | phrog_27988 | unknown function | unknown function | 1 | 33675 | 33947 |
| YP_009213199.1 | NC_028952_p72 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 48073 | 48510 |
| YP_009213202.1 | NC_028952_p75 | protein of an unannotated phage | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49993 | 50292 |
| YP_009213137.1 | NC_028952_p10 | protein of an unannotated phage | phrog_501 | head closure Hc1 | connector | 1 | 7392 | 7745 |
| YP_009213136.1 | NC_028952_p9 | protein of an unannotated phage | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6952 | 7395 |
| YP_009213151.1 | NC_028952_p24 | protein of an unannotated phage | phrog_2658 | hol-like chemotaxis | other | 1 | 20528 | 20860 |
| YP_009213144.1 | NC_028952_p17 | protein of an unannotated phage | phrog_11649 | tail protein | tail | 1 | 13649 | 14539 |
| YP_009213190.1 | NC_028952_p63 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42366 | 42692 |
| YP_009213187.1 | NC_028952_p60 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 40923 | 41120 |
| YP_009213189.1 | NC_028952_p62 | protein of an unannotated phage | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41503 | 42369 |
| YP_009213128.1 | NC_028952_p1 | protein of an unannotated phage | phrog_226 | minor tail protein | tail | 1 | 16 | 426 |
| YP_009213130.1 | NC_028952_p3 | protein of an unannotated phage | phrog_104 | portal protein | head and packaging | 1 | 2124 | 3551 |
| YP_009213176.1 | NC_028952_p49 | protein of an unannotated phage | phrog_16191 | unknown function | unknown function | 1 | 34777 | 35838 |
| YP_009213203.1 | NC_028952_p76 | protein of an unannotated phage | phrog_8643 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 50587 | 51171 |
| YP_009213164.1 | NC_028952_p37 | protein of an unannotated phage | phrog_761 | thymidylate kinase | other | 1 | 27677 | 28327 |
| YP_009213155.1 | NC_028952_p28 | protein of an unannotated phage | phrog_36104 | unknown function | unknown function | 1 | 23343 | 23537 |
| YP_009213178.1 | NC_028952_p51 | protein of an unannotated phage | phrog_22421 | unknown function | unknown function | 1 | 36644 | 37099 |
| YP_009213150.1 | NC_028952_p23 | protein of an unannotated phage | phrog_443 | holin | lysis | 1 | 20233 | 20484 |
| YP_009213212.1 | NC_028952_p85 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 57346 | 57642 |
| YP_009213208.1 | NC_028952_p81 | protein of an unannotated phage | phrog_146 | portal protein | head and packaging | 1 | 54647 | 55672 |
| YP_009213149.1 | NC_028952_p22 | protein of an unannotated phage | phrog_880 | endolysin | lysis | 1 | 19359 | 20186 |
| YP_009213129.1 | NC_028952_p2 | protein of an unannotated phage | phrog_9 | terminase large subunit | head and packaging | 1 | 441 | 2099 |
| YP_009213196.1 | NC_028952_p69 | protein of an unannotated phage | phrog_29416 | unknown function | unknown function | 1 | 46345 | 47619 |
| YP_009213173.1 | NC_028952_p46 | protein of an unannotated phage | phrog_23328 | unknown function | unknown function | 1 | 33136 | 33678 |
| YP_009213186.1 | NC_028952_p59 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 40399 | 40926 |
| YP_009213165.1 | NC_028952_p38 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 28324 | 28755 |
| YP_009213139.1 | NC_028952_p12 | protein of an unannotated phage | phrog_123 | tail terminator | connector | 1 | 8026 | 8427 |
| YP_009213154.1 | NC_028952_p27 | protein of an unannotated phage | phrog_28759 | unknown function | unknown function | 1 | 23077 | 23346 |
| YP_009213207.1 | NC_028952_p80 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 53709 | 54161 |
| YP_009213156.1 | NC_028952_p29 | protein of an unannotated phage | phrog_12213 | unknown function | unknown function | 1 | 23534 | 24052 |
| YP_009213142.1 | NC_028952_p15 | protein of an unannotated phage | phrog_5813 | tail assembly chaperone | tail | 1 | 9637 | 10065 |
| YP_009213162.1 | NC_028952_p35 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 25382 | 26221 |
| YP_009213134.1 | NC_028952_p7 | protein of an unannotated phage | phrog_29 | major head protein | head and packaging | 1 | 5580 | 6626 |
| YP_009213185.1 | NC_028952_p58 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 40199 | 40402 |
| YP_009213175.1 | NC_028952_p48 | protein of an unannotated phage | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 33944 | 34774 |
| YP_009213198.1 | NC_028952_p71 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 47817 | 47996 |
| YP_009213191.1 | NC_028952_p64 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42689 | 42814 |
| YP_009213211.1 | NC_028952_p84 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 56884 | 57198 |
| YP_009213152.1 | NC_028952_p25 | protein of an unannotated phage | phrog_1806 | collagen like minor tail | tail | 1 | 20908 | 21546 |
| YP_009213157.1 | NC_028952_p30 | protein of an unannotated phage | phrog_32738 | unknown function | unknown function | 1 | 24201 | 24683 |
| YP_009213197.1 | NC_028952_p70 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 47651 | 47743 |
| YP_009213194.1 | NC_028952_p67 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 44375 | 44590 |
| YP_009213166.1 | NC_028952_p39 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 29387 | 30592 |
| YP_009213158.1 | NC_028952_p31 | protein of an unannotated phage | phrog_35981 | unknown function | unknown function | 1 | 24668 | 24781 |
| YP_009213141.1 | NC_028952_p14 | protein of an unannotated phage | phrog_5010 | tail assembly chaperone | tail | 1 | 9269 | 9592 |
| YP_009213170.1 | NC_028952_p43 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 32113 | 32337 |
| YP_009213135.1 | NC_028952_p8 | protein of an unannotated phage | phrog_6587 | head-tail connector protein | connector | 1 | 6623 | 6946 |
| YP_009213200.1 | NC_028952_p73 | protein of an unannotated phage | phrog_23672 | unknown function | unknown function | 1 | 49506 | 49766 |
| YP_009213146.1 | NC_028952_p19 | protein of an unannotated phage | phrog_25601 | unknown function | unknown function | 1 | 15686 | 16612 |
| YP_009213183.1 | NC_028952_p56 | protein of an unannotated phage | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 38788 | 39564 |
| YP_009213132.1 | NC_028952_p5 | protein of an unannotated phage | phrog_4708 | head scaffolding protein | head and packaging | 1 | 4407 | 5156 |
| YP_009213148.1 | NC_028952_p21 | protein of an unannotated phage | phrog_7458 | tail spike protein | tail | 1 | 17253 | 19277 |
| YP_009213213.1 | NC_028952_p86 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 57698 | 57847 |
| YP_009213180.1 | NC_028952_p53 | protein of an unannotated phage | phrog_35474 | unknown function | unknown function | 1 | 37710 | 37985 |
| YP_009213131.1 | NC_028952_p4 | protein of an unannotated phage | phrog_1522 | head maturation protease | head and packaging | 1 | 3544 | 4344 |
| YP_009213177.1 | NC_028952_p50 | protein of an unannotated phage | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 35835 | 36647 |
| YP_009213147.1 | NC_028952_p20 | protein of an unannotated phage | phrog_22620 | unknown function | unknown function | 1 | 16626 | 17243 |
| YP_009213216.1 | NC_028952_p89 | protein of an unannotated phage | phrog_9747 | unknown function | unknown function | -1 | 60233 | 60691 |
| YP_009213169.1 | NC_028952_p42 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | -1 | 31162 | 31524 |
| YP_009213159.1 | NC_028952_p32 | protein of an unannotated phage | phrog_12354 | transcriptional regulator | transcription regulation | 1 | 24774 | 25223 |
| YP_009213209.1 | NC_028952_p82 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 55695 | 55889 |
| YP_009213188.1 | NC_028952_p61 | protein of an unannotated phage | phrog_38209 | unknown function | unknown function | 1 | 41153 | 41506 |
| YP_009213215.1 | NC_028952_p88 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | -1 | 58679 | 59956 |
| YP_009213206.1 | NC_028952_p79 | protein of an unannotated phage | phrog_760 | unknown function | unknown function | -1 | 52167 | 53399 |
| YP_009213161.1 | NC_028952_p34 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 25319 | 25381 |
| YP_009213163.1 | NC_028952_p36 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 26181 | 27680 |
| YP_009213140.1 | NC_028952_p13 | protein of an unannotated phage | phrog_476 | major tail protein | tail | 1 | 8500 | 9165 |
| YP_009213195.1 | NC_028952_p68 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 44674 | 46254 |
| YP_009213172.1 | NC_028952_p45 | protein of an unannotated phage | phrog_17827 | unknown function | unknown function | 1 | 32771 | 33139 |
| YP_009213153.1 | NC_028952_p26 | protein of an unannotated phage | phrog_5823 | transcriptional regulator | transcription regulation | 1 | 21757 | 22989 |
| YP_009213201.1 | NC_028952_p74 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 49841 | 49996 |
| YP_009213168.1 | NC_028952_p41 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 30962 | 31105 |
| YP_009213160.1 | NC_028952_p33 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 25247 | 25363 |
| YP_009213167.1 | NC_028952_p40 | protein of an unannotated phage | phrog_22170 | unknown function | unknown function | -1 | 30712 | 30963 |
| YP_009213133.1 | NC_028952_p6 | protein of an unannotated phage | phrog_3583 | head decoration | head and packaging | 1 | 5176 | 5565 |
| YP_009213205.1 | NC_028952_p78 | protein of an unannotated phage | phrog_766 | head decoration | head and packaging | -1 | 51714 | 52163 |
| YP_009213217.1 | NC_028952_p90 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 60684 | 60932 |
| YP_009213192.1 | NC_028952_p65 | protein of an unannotated phage | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 42811 | 43368 |
| YP_009213184.1 | NC_028952_p57 | protein of an unannotated phage | phrog_8924 | unknown function | unknown function | 1 | 39567 | 40202 |
| YP_009213193.1 | NC_028952_p66 | protein of an unannotated phage | phrog_7575 | unknown function | unknown function | 1 | 43466 | 44308 |
| YP_009213143.1 | NC_028952_p16 | protein of an unannotated phage | phrog_971 | endolysin | lysis | 1 | 10072 | 13644 |
| YP_009213214.1 | NC_028952_p87 | protein of an unannotated phage | phrog_4796 | unknown function | unknown function | 1 | 58134 | 58682 |
| YP_009213171.1 | NC_028952_p44 | protein of an unannotated phage | phrog_36719 | unknown function | unknown function | 1 | 32425 | 32778 |
| YP_009213204.1 | NC_028952_p77 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 51278 | 51349 |
| YP_009213138.1 | NC_028952_p11 | protein of an unannotated phage | phrog_387 | neck protein | connector | 1 | 7748 | 8026 |
| YP_009213182.1 | NC_028952_p55 | protein of an unannotated phage | phrog_16156 | unknown function | unknown function | 1 | 38425 | 38775 |
| YP_009213179.1 | NC_028952_p52 | protein of an unannotated phage | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37096 | 37713 |
| YP_009213181.1 | NC_028952_p54 | protein of an unannotated phage | phrog_15058 | unknown function | unknown function | 1 | 37991 | 38428 |