Genomic map of Clostridium phage phiCD146 (NC_028958)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028958
Definition
Clostridium phage phiCD146, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41507
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
30.68
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009214147.1 NC_028958_p19 hypothetical protein phrog_6130 unknown function unknown function 1 19090 19332
YP_009214138.1 NC_028958_p10 hypothetical protein phrog_556 minor head protein head and packaging 1 7545 7892
YP_009214167.1 NC_028958_p39 hypothetical protein phrog_1029 unknown function unknown function 1 35498 36220
YP_009214140.1 NC_028958_p12 hypothetical protein phrog_3099 unknown function unknown function 1 8323 9123
YP_009214156.1 NC_028958_p28 hypothetical protein phrog_4021 unknown function unknown function -1 26946 27236
YP_009214131.1 NC_028958_p3 Minor capsid protein phrog_533 portal protein head and packaging 1 2051 3463
YP_009214133.1 NC_028958_p5 hypothetical protein phrog_322 unknown function unknown function 1 4690 4950
YP_009214154.1 NC_028958_p26 hypothetical protein phrog_6809 unknown function unknown function 1 25717 26223
YP_009214150.1 NC_028958_p22 holin phrog_4884 holin lysis 1 23298 23561
YP_009214146.1 NC_028958_p18 Tail protein/endopeptidase phrog_8687 tail protein with peptidase activity other 1 17264 19063
YP_009214174.1 NC_028958_p46 hypothetical protein phrog_28936 unknown function unknown function 1 37657 38304
YP_009214153.1 NC_028958_p25 hypothetical protein phrog_6775 unknown function unknown function 1 24808 25638
YP_009214142.1 NC_028958_p14 hypothetical protein phrog_706 unknown function unknown function 1 9501 10106
YP_009214176.1 NC_028958_p48 hypothetical protein phrog_7197 unknown function unknown function 1 38656 38835
YP_009214152.1 NC_028958_p24 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 24417 24629
YP_009214144.1 NC_028958_p16 Tail tape measure phrog_1272 tail length tape measure protein tail 1 10929 16079
YP_009214149.1 NC_028958_p21 Tail fiber protein phrog_7809 tail fiber protein tail 1 21362 23212
YP_009214130.1 NC_028958_p2 Terminase large subunit phrog_2 terminase large subunit head and packaging 1 728 2050
YP_009214173.1 NC_028958_p45 Single-stranded DNA-binding protein 2 phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 37260 37685
YP_009214135.1 NC_028958_p7 Phage coat protein phrog_247 major head protein head and packaging 1 5693 6766
YP_009214137.1 NC_028958_p9 hypothetical protein phrog_3366 unknown function unknown function 1 7095 7538
YP_009214132.1 NC_028958_p4 Minor capsid protein phrog_581 minor head protein head and packaging 1 3464 4693
YP_009214166.1 NC_028958_p38 Replication terminator protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 35080 35484
YP_009214141.1 NC_028958_p13 hypothetical protein phrog_4450 unknown function unknown function 1 9139 9501
YP_009214157.1 NC_028958_p29 hypothetical protein phrog_4741 unknown function unknown function -1 27371 27703
YP_009214143.1 NC_028958_p15 hypothetical protein phrog_7974 unknown function unknown function 1 10180 10821
YP_009214162.1 NC_028958_p34 hypothetical protein phrog_28159 unknown function unknown function 1 33196 33306
YP_009214175.1 NC_028958_p47 hypothetical protein phrog_1310 unknown function unknown function 1 38316 38678
YP_009214168.1 NC_028958_p40 hypothetical protein phrog_2065 unknown function unknown function 1 36268 36441
YP_009214159.1 NC_028958_p31 hypothetical protein phrog_2329 unknown function unknown function -1 28802 28984
YP_009214178.1 NC_028958_p50 Sigma70/sigmaF-like protein (fragment) phrog_36 transcriptional regulator transcription regulation 1 39102 39557
YP_009214155.1 NC_028958_p27 hypothetical protein phrog_4337 unknown function unknown function 1 26243 26713
YP_009214148.1 NC_028958_p20 Tail fiber protein phrog_9525 tail fiber protein tail 1 19338 21362
YP_009214139.1 NC_028958_p11 hypothetical protein phrog_3266 tail completion connector 1 7889 8320
YP_009214158.1 NC_028958_p30 para phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 27704 28522
YP_009214171.1 NC_028958_p43 hypothetical protein phrog_3221 unknown function unknown function 1 37002 37175
YP_009214161.1 NC_028958_p33 hypothetical protein phrog_6335 unknown function unknown function 1 32636 32983
YP_009214160.1 NC_028958_p32 DNAse/helicase protein phrog_5173 unknown function unknown function 1 30403 32589
YP_009214179.1 NC_028958_p51 Integrase family protein phrog_216 integrase integration and excision 1 39725 40369
YP_009214136.1 NC_028958_p8 hypothetical protein phrog_541 head-tail adaptor connector 1 6770 7102
YP_009214180.1 NC_028958_p52 Resolvase domain phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 40887 41507
YP_009214129.1 NC_028958_p1 Terminase small subunit phrog_509 terminase small subunit head and packaging 1 28 741
YP_009214134.1 NC_028958_p6 Scaffolding protein phrog_194 head scaffolding protein head and packaging 1 5110 5682
YP_009214177.1 NC_028958_p49 hypothetical protein singleton unknown function unknown function 1 38880 39020
YP_009214145.1 NC_028958_p17 Tail component protein phrog_33 distal tail protein Dit tail 1 16179 16934
YP_009214170.1 NC_028958_p42 hypothetical protein phrog_2569 unknown function unknown function 1 36818 36979
YP_009214163.1 NC_028958_p35 CI phage repressor phrog_8 transcriptional regulator transcription regulation -1 33805 34158
YP_009214165.1 NC_028958_p37 hypothetical protein phrog_4206 unknown function unknown function 1 34580 35005
YP_009214172.1 NC_028958_p44 hypothetical protein phrog_6827 unknown function unknown function 1 37175 37294
YP_009214169.1 NC_028958_p41 hypothetical protein phrog_5442 unknown function unknown function 1 36438 36770
YP_009214151.1 NC_028958_p23 Endolysine phrog_435 endolysin lysis 1 23562 24368
YP_009214164.1 NC_028958_p36 hypothetical protein phrog_6407 unknown function unknown function 1 34331 34513