| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028958 |
Definition |
Clostridium phage phiCD146, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41507 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
30.68 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009214147.1 | NC_028958_p19 | hypothetical protein | phrog_6130 | unknown function | unknown function | 1 | 19090 | 19332 |
| YP_009214138.1 | NC_028958_p10 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 7545 | 7892 |
| YP_009214167.1 | NC_028958_p39 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 35498 | 36220 |
| YP_009214140.1 | NC_028958_p12 | hypothetical protein | phrog_3099 | unknown function | unknown function | 1 | 8323 | 9123 |
| YP_009214156.1 | NC_028958_p28 | hypothetical protein | phrog_4021 | unknown function | unknown function | -1 | 26946 | 27236 |
| YP_009214131.1 | NC_028958_p3 | Minor capsid protein | phrog_533 | portal protein | head and packaging | 1 | 2051 | 3463 |
| YP_009214133.1 | NC_028958_p5 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 4690 | 4950 |
| YP_009214154.1 | NC_028958_p26 | hypothetical protein | phrog_6809 | unknown function | unknown function | 1 | 25717 | 26223 |
| YP_009214150.1 | NC_028958_p22 | holin | phrog_4884 | holin | lysis | 1 | 23298 | 23561 |
| YP_009214146.1 | NC_028958_p18 | Tail protein/endopeptidase | phrog_8687 | tail protein with peptidase activity | other | 1 | 17264 | 19063 |
| YP_009214174.1 | NC_028958_p46 | hypothetical protein | phrog_28936 | unknown function | unknown function | 1 | 37657 | 38304 |
| YP_009214153.1 | NC_028958_p25 | hypothetical protein | phrog_6775 | unknown function | unknown function | 1 | 24808 | 25638 |
| YP_009214142.1 | NC_028958_p14 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 9501 | 10106 |
| YP_009214176.1 | NC_028958_p48 | hypothetical protein | phrog_7197 | unknown function | unknown function | 1 | 38656 | 38835 |
| YP_009214152.1 | NC_028958_p24 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 24417 | 24629 |
| YP_009214144.1 | NC_028958_p16 | Tail tape measure | phrog_1272 | tail length tape measure protein | tail | 1 | 10929 | 16079 |
| YP_009214149.1 | NC_028958_p21 | Tail fiber protein | phrog_7809 | tail fiber protein | tail | 1 | 21362 | 23212 |
| YP_009214130.1 | NC_028958_p2 | Terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 728 | 2050 |
| YP_009214173.1 | NC_028958_p45 | Single-stranded DNA-binding protein 2 | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37260 | 37685 |
| YP_009214135.1 | NC_028958_p7 | Phage coat protein | phrog_247 | major head protein | head and packaging | 1 | 5693 | 6766 |
| YP_009214137.1 | NC_028958_p9 | hypothetical protein | phrog_3366 | unknown function | unknown function | 1 | 7095 | 7538 |
| YP_009214132.1 | NC_028958_p4 | Minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 3464 | 4693 |
| YP_009214166.1 | NC_028958_p38 | Replication terminator protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 35080 | 35484 |
| YP_009214141.1 | NC_028958_p13 | hypothetical protein | phrog_4450 | unknown function | unknown function | 1 | 9139 | 9501 |
| YP_009214157.1 | NC_028958_p29 | hypothetical protein | phrog_4741 | unknown function | unknown function | -1 | 27371 | 27703 |
| YP_009214143.1 | NC_028958_p15 | hypothetical protein | phrog_7974 | unknown function | unknown function | 1 | 10180 | 10821 |
| YP_009214162.1 | NC_028958_p34 | hypothetical protein | phrog_28159 | unknown function | unknown function | 1 | 33196 | 33306 |
| YP_009214175.1 | NC_028958_p47 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 38316 | 38678 |
| YP_009214168.1 | NC_028958_p40 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 36268 | 36441 |
| YP_009214159.1 | NC_028958_p31 | hypothetical protein | phrog_2329 | unknown function | unknown function | -1 | 28802 | 28984 |
| YP_009214178.1 | NC_028958_p50 | Sigma70/sigmaF-like protein (fragment) | phrog_36 | transcriptional regulator | transcription regulation | 1 | 39102 | 39557 |
| YP_009214155.1 | NC_028958_p27 | hypothetical protein | phrog_4337 | unknown function | unknown function | 1 | 26243 | 26713 |
| YP_009214148.1 | NC_028958_p20 | Tail fiber protein | phrog_9525 | tail fiber protein | tail | 1 | 19338 | 21362 |
| YP_009214139.1 | NC_028958_p11 | hypothetical protein | phrog_3266 | tail completion | connector | 1 | 7889 | 8320 |
| YP_009214158.1 | NC_028958_p30 | para | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 27704 | 28522 |
| YP_009214171.1 | NC_028958_p43 | hypothetical protein | phrog_3221 | unknown function | unknown function | 1 | 37002 | 37175 |
| YP_009214161.1 | NC_028958_p33 | hypothetical protein | phrog_6335 | unknown function | unknown function | 1 | 32636 | 32983 |
| YP_009214160.1 | NC_028958_p32 | DNAse/helicase protein | phrog_5173 | unknown function | unknown function | 1 | 30403 | 32589 |
| YP_009214179.1 | NC_028958_p51 | Integrase family protein | phrog_216 | integrase | integration and excision | 1 | 39725 | 40369 |
| YP_009214136.1 | NC_028958_p8 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 6770 | 7102 |
| YP_009214180.1 | NC_028958_p52 | Resolvase domain | phrog_125 | DNA invertase | DNA, RNA and nucleotide metabolism | 1 | 40887 | 41507 |
| YP_009214129.1 | NC_028958_p1 | Terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 28 | 741 |
| YP_009214134.1 | NC_028958_p6 | Scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5110 | 5682 |
| YP_009214177.1 | NC_028958_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38880 | 39020 |
| YP_009214145.1 | NC_028958_p17 | Tail component protein | phrog_33 | distal tail protein Dit | tail | 1 | 16179 | 16934 |
| YP_009214170.1 | NC_028958_p42 | hypothetical protein | phrog_2569 | unknown function | unknown function | 1 | 36818 | 36979 |
| YP_009214163.1 | NC_028958_p35 | CI phage repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 33805 | 34158 |
| YP_009214165.1 | NC_028958_p37 | hypothetical protein | phrog_4206 | unknown function | unknown function | 1 | 34580 | 35005 |
| YP_009214172.1 | NC_028958_p44 | hypothetical protein | phrog_6827 | unknown function | unknown function | 1 | 37175 | 37294 |
| YP_009214169.1 | NC_028958_p41 | hypothetical protein | phrog_5442 | unknown function | unknown function | 1 | 36438 | 36770 |
| YP_009214151.1 | NC_028958_p23 | Endolysine | phrog_435 | endolysin | lysis | 1 | 23562 | 24368 |
| YP_009214164.1 | NC_028958_p36 | hypothetical protein | phrog_6407 | unknown function | unknown function | 1 | 34331 | 34513 |