Genomic map of Clostridium phage phiMMP03 (NC_028959)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028959
Definition
Clostridium phage phiMMP03, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
REFSEQ
Length
52261
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
93
%GC
28.87
Number of singletons
0
Number of paralogs
9

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009214247.1 NC_028959_p67 hypothetical protein phrog_1564 unknown function unknown function 1 39025 39252
YP_009214265.1 NC_028959_p85 hypothetical protein phrog_3794 unknown function unknown function 1 47759 47872
YP_009214211.1 NC_028959_p31 hypothetical protein phrog_4196 unknown function unknown function 1 22488 22700
YP_009214187.1 NC_028959_p7 Capsid protein phrog_422 major head protein head and packaging 1 5681 6580
YP_009214190.1 NC_028959_p10 hypothetical protein phrog_615 head-tail adaptor connector 1 7218 7565
YP_009214186.1 NC_028959_p6 scaffold protein phrog_194 head scaffolding protein head and packaging 1 5106 5669
YP_009214244.1 NC_028959_p64 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 38451 38594
YP_009214221.1 NC_028959_p41 hypothetical protein phrog_9105 unknown function unknown function 1 28398 28964
YP_009214206.1 NC_028959_p26 hypothetical protein phrog_120 baseplate wedge subunit tail 1 18626 19045
YP_009214272.1 NC_028959_p92 hypothetical protein phrog_2211 unknown function unknown function -1 51593 51910
YP_009214232.1 NC_028959_p52 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 34469 34702
YP_009214243.1 NC_028959_p63 hypothetical protein phrog_4222 unknown function unknown function 1 38231 38419
YP_009214255.1 NC_028959_p75 hypothetical protein phrog_1310 unknown function unknown function 1 43014 43379
YP_009214242.1 NC_028959_p62 hypothetical protein phrog_35211 unknown function unknown function 1 38104 38220
YP_009214249.1 NC_028959_p69 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 39748 40257
YP_009214241.1 NC_028959_p61 hypothetical protein phrog_1877 DNA binding protein DNA, RNA and nucleotide metabolism 1 37669 38103
YP_009214235.1 NC_028959_p55 hypothetical protein phrog_228 Arc-like repressor transcription regulation -1 35696 35863
YP_009214271.1 NC_028959_p91 hypothetical protein phrog_4010 unknown function unknown function 1 51425 51613
YP_009214231.1 NC_028959_p51 repressor phrog_8 transcriptional regulator transcription regulation -1 33895 34272
YP_009214253.1 NC_028959_p73 Single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 42016 42423
YP_009214184.1 NC_028959_p4 head morphogenesis protein phrog_115 minor head protein head and packaging 1 3428 4825
YP_009214182.1 NC_028959_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 740 1993
YP_009214196.1 NC_028959_p16 hypothetical protein phrog_3466 unknown function unknown function 1 10445 10702
YP_009214262.1 NC_028959_p82 hypothetical protein phrog_4572 unknown function unknown function 1 46766 47137
YP_009214267.1 NC_028959_p87 hypothetical protein phrog_463 anti-repressor transcription regulation 1 48378 49226
YP_009214223.1 NC_028959_p43 hypothetical protein phrog_2569 unknown function unknown function -1 29374 29562
YP_009214199.1 NC_028959_p19 hypothetical protein phrog_1664 unknown function unknown function 1 11778 12011
YP_009214204.1 NC_028959_p24 phage cell wall hydrolase phrog_400 tail protein tail 1 16377 18347
YP_009214194.1 NC_028959_p14 sheath tail protein phrog_279 tail sheath tail 1 8590 9900
YP_009214230.1 NC_028959_p50 hypothetical protein phrog_18539 unknown function unknown function 1 33721 33858
YP_009214213.1 NC_028959_p33 hypothetical protein phrog_4184 unknown function unknown function 1 22916 24151
YP_009214240.1 NC_028959_p60 repressor phrog_3 transcriptional repressor transcription regulation 1 37433 37630
YP_009214263.1 NC_028959_p83 hypothetical protein phrog_5599 unknown function unknown function 1 47140 47322
YP_009214266.1 NC_028959_p86 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47869 48276
YP_009214217.1 NC_028959_p37 hypothetical protein phrog_1193 hemolysin other 1 26336 26566
YP_009214219.1 NC_028959_p39 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 26843 27655
YP_009214216.1 NC_028959_p36 hypothetical protein phrog_1589 unknown function unknown function 1 24713 26278
YP_009214259.1 NC_028959_p79 hypothetical protein phrog_2462 unknown function unknown function 1 45093 45302
YP_009214183.1 NC_028959_p3 portal protein phrog_64 portal protein head and packaging 1 1999 3438
YP_009214193.1 NC_028959_p13 hypothetical protein phrog_966 unknown function unknown function 1 8413 8589
YP_009214264.1 NC_028959_p84 hypothetical protein phrog_4279 unknown function unknown function 1 47402 47743
YP_009214248.1 NC_028959_p68 hypothetical protein phrog_2219 unknown function unknown function 1 39350 39664
YP_009214224.1 NC_028959_p44 hypothetical protein phrog_738 unknown function unknown function 1 29820 29963
YP_009214239.1 NC_028959_p59 hypothetical protein phrog_5079 unknown function unknown function -1 37222 37374
YP_009214227.1 NC_028959_p47 integrase phrog_1 integrase integration and excision -1 31647 32813
YP_009214270.1 NC_028959_p90 hypothetical protein phrog_1758 acetyltransferase other 1 50737 51348
YP_009214214.1 NC_028959_p34 hypothetical protein phrog_3834 unknown function unknown function 1 24148 24447
YP_009214205.1 NC_028959_p25 hypothetical protein phrog_579 unknown function unknown function 1 18400 18621
YP_009214257.1 NC_028959_p77 hypothetical protein phrog_8001 unknown function unknown function 1 43497 43832
YP_009214200.1 NC_028959_p20 conserved exported protein of unknown function phrog_806 unknown function unknown function 1 12071 12598
YP_009214261.1 NC_028959_p81 hypothetical protein phrog_6014 unknown function unknown function 1 46400 46729
YP_009214256.1 NC_028959_p76 hypothetical protein phrog_2961 unknown function unknown function 1 43379 43513
YP_009214197.1 NC_028959_p17 hypothetical protein phrog_389 tail protein XkdN-like tail 1 10707 11147
YP_009214269.1 NC_028959_p89 hypothetical protein phrog_3291 unknown function unknown function 1 50564 50737
YP_009214226.1 NC_028959_p46 transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 30953 31336
YP_009214251.1 NC_028959_p71 DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 40885 41766
YP_009214250.1 NC_028959_p70 Essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 40267 40875
YP_009214198.1 NC_028959_p18 hypothetical protein phrog_738 unknown function unknown function 1 11459 11629
YP_009214208.1 NC_028959_p28 hypothetical protein phrog_521 tail protein tail 1 20088 20705
YP_009214234.1 NC_028959_p54 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 35547 35684
YP_009214189.1 NC_028959_p9 hypothetical protein phrog_132 head-tail adaptor connector 1 6823 7224
YP_009214192.1 NC_028959_p12 hypothetical protein phrog_525 unknown function unknown function 1 7983 8420
YP_009214260.1 NC_028959_p80 hypothetical protein phrog_1974 unknown function unknown function 1 45314 46318
YP_009214185.1 NC_028959_p5 hypothetical protein phrog_1865 unknown function unknown function 1 4840 5040
YP_009214245.1 NC_028959_p65 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 38554 38724
YP_009214222.1 NC_028959_p42 hypothetical protein phrog_17489 unknown function unknown function 1 29146 29298
YP_009214201.1 NC_028959_p21 hypothetical protein phrog_2546 unknown function unknown function 1 12740 13300
YP_009214218.1 NC_028959_p38 Holin phrog_1129 holin lysis 1 26586 26843
YP_009214188.1 NC_028959_p8 hypothetical protein phrog_1378 unknown function unknown function 1 6580 6813
YP_009214210.1 NC_028959_p30 hypothetical protein phrog_3361 unknown function unknown function 1 21840 22478
YP_009214228.1 NC_028959_p48 hypothetical protein phrog_8194 unknown function unknown function -1 32951 33157
YP_009214202.1 NC_028959_p22 tail tape measure protein phrog_1068 tail length tape measure protein tail 1 13378 15666
YP_009214181.1 NC_028959_p1 phage-related terminase small subunit phrog_509 terminase small subunit head and packaging 1 70 762
YP_009214236.1 NC_028959_p56 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 35986 36162
YP_009214195.1 NC_028959_p15 core tail phrog_365 tail protein tail 1 9922 10392
YP_009214268.1 NC_028959_p88 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 49329 49817
YP_009214258.1 NC_028959_p78 phage DNA modification methylase phrog_116 DNA methyltransferase other 1 43940 45013
YP_009214254.1 NC_028959_p74 hypothetical protein phrog_7118 unknown function unknown function 1 42497 43000
YP_009214209.1 NC_028959_p29 tail fiber protein phrog_1162 tail fiber protein tail 1 20717 21826
YP_009214225.1 NC_028959_p45 hypothetical protein phrog_1077 transcriptional regulator transcription regulation 1 30471 30848
YP_009214207.1 NC_028959_p27 hypothetical protein phrog_6 baseplate wedge subunit tail 1 19046 20095
YP_009214215.1 NC_028959_p35 hypothetical protein phrog_134 unknown function unknown function 1 24448 24585
YP_009214212.1 NC_028959_p32 hypothetical protein phrog_1243 unknown function unknown function 1 22700 22882
YP_009214273.1 NC_028959_p93 hypothetical protein phrog_4083 unknown function unknown function 1 52034 52261
YP_009214237.1 NC_028959_p57 antirepressor phrog_463 anti-repressor transcription regulation 1 36155 36793
YP_009214191.1 NC_028959_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7565 7990
YP_009214252.1 NC_028959_p72 hypothetical protein phrog_3253 unknown function unknown function 1 41827 42000
YP_009214238.1 NC_028959_p58 hypothetical protein phrog_9735 unknown function unknown function 1 36852 37232
YP_009214233.1 NC_028959_p53 SPBc2 prophage-derived antirepressor protein yoqD phrog_63 anti-repressor Ant transcription regulation 1 34702 35490
YP_009214229.1 NC_028959_p49 cI repressor phrog_3 transcriptional repressor transcription regulation -1 33216 33437
YP_009214220.1 NC_028959_p40 hypothetical protein phrog_9125 unknown function unknown function 1 27905 28396
YP_009214203.1 NC_028959_p23 LysM phrog_380 endolysin lysis 1 15683 16384
YP_009214246.1 NC_028959_p66 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 38867 39025