| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028959 |
Definition |
Clostridium phage phiMMP03, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
REFSEQ |
Length |
52261 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
93 |
%GC |
28.87 |
Number of singletons |
0 |
Number of paralogs |
9 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009214247.1 | NC_028959_p67 | hypothetical protein | phrog_1564 | unknown function | unknown function | 1 | 39025 | 39252 |
| YP_009214265.1 | NC_028959_p85 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 47759 | 47872 |
| YP_009214211.1 | NC_028959_p31 | hypothetical protein | phrog_4196 | unknown function | unknown function | 1 | 22488 | 22700 |
| YP_009214187.1 | NC_028959_p7 | Capsid protein | phrog_422 | major head protein | head and packaging | 1 | 5681 | 6580 |
| YP_009214190.1 | NC_028959_p10 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 7218 | 7565 |
| YP_009214186.1 | NC_028959_p6 | scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5106 | 5669 |
| YP_009214244.1 | NC_028959_p64 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 38451 | 38594 |
| YP_009214221.1 | NC_028959_p41 | hypothetical protein | phrog_9105 | unknown function | unknown function | 1 | 28398 | 28964 |
| YP_009214206.1 | NC_028959_p26 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 18626 | 19045 |
| YP_009214272.1 | NC_028959_p92 | hypothetical protein | phrog_2211 | unknown function | unknown function | -1 | 51593 | 51910 |
| YP_009214232.1 | NC_028959_p52 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34469 | 34702 |
| YP_009214243.1 | NC_028959_p63 | hypothetical protein | phrog_4222 | unknown function | unknown function | 1 | 38231 | 38419 |
| YP_009214255.1 | NC_028959_p75 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 43014 | 43379 |
| YP_009214242.1 | NC_028959_p62 | hypothetical protein | phrog_35211 | unknown function | unknown function | 1 | 38104 | 38220 |
| YP_009214249.1 | NC_028959_p69 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 39748 | 40257 |
| YP_009214241.1 | NC_028959_p61 | hypothetical protein | phrog_1877 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37669 | 38103 |
| YP_009214235.1 | NC_028959_p55 | hypothetical protein | phrog_228 | Arc-like repressor | transcription regulation | -1 | 35696 | 35863 |
| YP_009214271.1 | NC_028959_p91 | hypothetical protein | phrog_4010 | unknown function | unknown function | 1 | 51425 | 51613 |
| YP_009214231.1 | NC_028959_p51 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 33895 | 34272 |
| YP_009214253.1 | NC_028959_p73 | Single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42016 | 42423 |
| YP_009214184.1 | NC_028959_p4 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 3428 | 4825 |
| YP_009214182.1 | NC_028959_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 740 | 1993 |
| YP_009214196.1 | NC_028959_p16 | hypothetical protein | phrog_3466 | unknown function | unknown function | 1 | 10445 | 10702 |
| YP_009214262.1 | NC_028959_p82 | hypothetical protein | phrog_4572 | unknown function | unknown function | 1 | 46766 | 47137 |
| YP_009214267.1 | NC_028959_p87 | hypothetical protein | phrog_463 | anti-repressor | transcription regulation | 1 | 48378 | 49226 |
| YP_009214223.1 | NC_028959_p43 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 29374 | 29562 |
| YP_009214199.1 | NC_028959_p19 | hypothetical protein | phrog_1664 | unknown function | unknown function | 1 | 11778 | 12011 |
| YP_009214204.1 | NC_028959_p24 | phage cell wall hydrolase | phrog_400 | tail protein | tail | 1 | 16377 | 18347 |
| YP_009214194.1 | NC_028959_p14 | sheath tail protein | phrog_279 | tail sheath | tail | 1 | 8590 | 9900 |
| YP_009214230.1 | NC_028959_p50 | hypothetical protein | phrog_18539 | unknown function | unknown function | 1 | 33721 | 33858 |
| YP_009214213.1 | NC_028959_p33 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 22916 | 24151 |
| YP_009214240.1 | NC_028959_p60 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 37433 | 37630 |
| YP_009214263.1 | NC_028959_p83 | hypothetical protein | phrog_5599 | unknown function | unknown function | 1 | 47140 | 47322 |
| YP_009214266.1 | NC_028959_p86 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47869 | 48276 |
| YP_009214217.1 | NC_028959_p37 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 26336 | 26566 |
| YP_009214219.1 | NC_028959_p39 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 26843 | 27655 |
| YP_009214216.1 | NC_028959_p36 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 24713 | 26278 |
| YP_009214259.1 | NC_028959_p79 | hypothetical protein | phrog_2462 | unknown function | unknown function | 1 | 45093 | 45302 |
| YP_009214183.1 | NC_028959_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1999 | 3438 |
| YP_009214193.1 | NC_028959_p13 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 8413 | 8589 |
| YP_009214264.1 | NC_028959_p84 | hypothetical protein | phrog_4279 | unknown function | unknown function | 1 | 47402 | 47743 |
| YP_009214248.1 | NC_028959_p68 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 39350 | 39664 |
| YP_009214224.1 | NC_028959_p44 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 29820 | 29963 |
| YP_009214239.1 | NC_028959_p59 | hypothetical protein | phrog_5079 | unknown function | unknown function | -1 | 37222 | 37374 |
| YP_009214227.1 | NC_028959_p47 | integrase | phrog_1 | integrase | integration and excision | -1 | 31647 | 32813 |
| YP_009214270.1 | NC_028959_p90 | hypothetical protein | phrog_1758 | acetyltransferase | other | 1 | 50737 | 51348 |
| YP_009214214.1 | NC_028959_p34 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 24148 | 24447 |
| YP_009214205.1 | NC_028959_p25 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 18400 | 18621 |
| YP_009214257.1 | NC_028959_p77 | hypothetical protein | phrog_8001 | unknown function | unknown function | 1 | 43497 | 43832 |
| YP_009214200.1 | NC_028959_p20 | conserved exported protein of unknown function | phrog_806 | unknown function | unknown function | 1 | 12071 | 12598 |
| YP_009214261.1 | NC_028959_p81 | hypothetical protein | phrog_6014 | unknown function | unknown function | 1 | 46400 | 46729 |
| YP_009214256.1 | NC_028959_p76 | hypothetical protein | phrog_2961 | unknown function | unknown function | 1 | 43379 | 43513 |
| YP_009214197.1 | NC_028959_p17 | hypothetical protein | phrog_389 | tail protein XkdN-like | tail | 1 | 10707 | 11147 |
| YP_009214269.1 | NC_028959_p89 | hypothetical protein | phrog_3291 | unknown function | unknown function | 1 | 50564 | 50737 |
| YP_009214226.1 | NC_028959_p46 | transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 30953 | 31336 |
| YP_009214251.1 | NC_028959_p71 | DnaD | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 40885 | 41766 |
| YP_009214250.1 | NC_028959_p70 | Essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40267 | 40875 |
| YP_009214198.1 | NC_028959_p18 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 11459 | 11629 |
| YP_009214208.1 | NC_028959_p28 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 20088 | 20705 |
| YP_009214234.1 | NC_028959_p54 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 35547 | 35684 |
| YP_009214189.1 | NC_028959_p9 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 6823 | 7224 |
| YP_009214192.1 | NC_028959_p12 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 7983 | 8420 |
| YP_009214260.1 | NC_028959_p80 | hypothetical protein | phrog_1974 | unknown function | unknown function | 1 | 45314 | 46318 |
| YP_009214185.1 | NC_028959_p5 | hypothetical protein | phrog_1865 | unknown function | unknown function | 1 | 4840 | 5040 |
| YP_009214245.1 | NC_028959_p65 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | -1 | 38554 | 38724 |
| YP_009214222.1 | NC_028959_p42 | hypothetical protein | phrog_17489 | unknown function | unknown function | 1 | 29146 | 29298 |
| YP_009214201.1 | NC_028959_p21 | hypothetical protein | phrog_2546 | unknown function | unknown function | 1 | 12740 | 13300 |
| YP_009214218.1 | NC_028959_p38 | Holin | phrog_1129 | holin | lysis | 1 | 26586 | 26843 |
| YP_009214188.1 | NC_028959_p8 | hypothetical protein | phrog_1378 | unknown function | unknown function | 1 | 6580 | 6813 |
| YP_009214210.1 | NC_028959_p30 | hypothetical protein | phrog_3361 | unknown function | unknown function | 1 | 21840 | 22478 |
| YP_009214228.1 | NC_028959_p48 | hypothetical protein | phrog_8194 | unknown function | unknown function | -1 | 32951 | 33157 |
| YP_009214202.1 | NC_028959_p22 | tail tape measure protein | phrog_1068 | tail length tape measure protein | tail | 1 | 13378 | 15666 |
| YP_009214181.1 | NC_028959_p1 | phage-related terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 70 | 762 |
| YP_009214236.1 | NC_028959_p56 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 35986 | 36162 |
| YP_009214195.1 | NC_028959_p15 | core tail | phrog_365 | tail protein | tail | 1 | 9922 | 10392 |
| YP_009214268.1 | NC_028959_p88 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 49329 | 49817 |
| YP_009214258.1 | NC_028959_p78 | phage DNA modification methylase | phrog_116 | DNA methyltransferase | other | 1 | 43940 | 45013 |
| YP_009214254.1 | NC_028959_p74 | hypothetical protein | phrog_7118 | unknown function | unknown function | 1 | 42497 | 43000 |
| YP_009214209.1 | NC_028959_p29 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 20717 | 21826 |
| YP_009214225.1 | NC_028959_p45 | hypothetical protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 30471 | 30848 |
| YP_009214207.1 | NC_028959_p27 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19046 | 20095 |
| YP_009214215.1 | NC_028959_p35 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 24448 | 24585 |
| YP_009214212.1 | NC_028959_p32 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 22700 | 22882 |
| YP_009214273.1 | NC_028959_p93 | hypothetical protein | phrog_4083 | unknown function | unknown function | 1 | 52034 | 52261 |
| YP_009214237.1 | NC_028959_p57 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 36155 | 36793 |
| YP_009214191.1 | NC_028959_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7565 | 7990 |
| YP_009214252.1 | NC_028959_p72 | hypothetical protein | phrog_3253 | unknown function | unknown function | 1 | 41827 | 42000 |
| YP_009214238.1 | NC_028959_p58 | hypothetical protein | phrog_9735 | unknown function | unknown function | 1 | 36852 | 37232 |
| YP_009214233.1 | NC_028959_p53 | SPBc2 prophage-derived antirepressor protein yoqD | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 34702 | 35490 |
| YP_009214229.1 | NC_028959_p49 | cI repressor | phrog_3 | transcriptional repressor | transcription regulation | -1 | 33216 | 33437 |
| YP_009214220.1 | NC_028959_p40 | hypothetical protein | phrog_9125 | unknown function | unknown function | 1 | 27905 | 28396 |
| YP_009214203.1 | NC_028959_p23 | LysM | phrog_380 | endolysin | lysis | 1 | 15683 | 16384 |
| YP_009214246.1 | NC_028959_p66 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 38867 | 39025 |