Genomic map of Mycobacterium phage Theia (NC_028960)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028960
Definition
Mycobacterium phage Theia, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
50999
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
60.76
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009214309.1 NC_028960_p36 hypothetical protein phrog_762 unknown function unknown function -1 30406 30792
YP_009214283.1 NC_028960_p10 scaffold protein phrog_233 head scaffolding protein head and packaging 1 10199 10708
YP_009214276.1 NC_028960_p3 hypothetical protein phrog_1197 tail protein tail 1 2355 3572
YP_009214295.1 NC_028960_p22 hypothetical protein phrog_352 minor tail protein tail 1 21484 21948
YP_009214353.1 NC_028960_p80 ArdA-like antirestriction protein phrog_2059 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 47278 47799
YP_009214322.1 NC_028960_p49 hypothetical protein phrog_5242 unknown function unknown function -1 37544 37819
YP_009214305.1 NC_028960_p32 hypothetical protein phrog_383 unknown function unknown function -1 27436 27882
YP_009214314.1 NC_028960_p41 hypothetical protein phrog_301 secreted protein other -1 34463 34792
YP_009214285.1 NC_028960_p12 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 11736 12110
YP_009214336.1 NC_028960_p63 hypothetical protein phrog_520 unknown function unknown function -1 41749 41988
YP_009214280.1 NC_028960_p7 terminase phrog_9 terminase large subunit head and packaging 1 6097 7875
YP_009214279.1 NC_028960_p6 lysin B phrog_102 endolysin lysis 1 5291 6100
YP_009214315.1 NC_028960_p42 hypothetical protein phrog_499 unknown function unknown function -1 34789 34959
YP_009214329.1 NC_028960_p56 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39565 40029
YP_009214345.1 NC_028960_p72 hypothetical protein phrog_5561 unknown function unknown function -1 45140 45319
YP_009214306.1 NC_028960_p33 hypothetical protein phrog_15233 unknown function unknown function -1 27869 28183
YP_009214342.1 NC_028960_p69 hypothetical protein phrog_1178 unknown function unknown function -1 44482 44724
YP_009214324.1 NC_028960_p51 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38103 38765
YP_009214277.1 NC_028960_p4 hypothetical protein phrog_356 minor tail protein tail 1 3572 4234
YP_009214343.1 NC_028960_p70 hypothetical protein phrog_5066 unknown function unknown function -1 44721 44972
YP_009214278.1 NC_028960_p5 lysin A phrog_1512 endolysin lysis 1 4377 5294
YP_009214332.1 NC_028960_p59 hypothetical protein singleton unknown function unknown function -1 40263 40550
YP_009214325.1 NC_028960_p52 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38575 38985
YP_009214281.1 NC_028960_p8 portal protein phrog_104 portal protein head and packaging 1 7875 9308
YP_009214301.1 NC_028960_p28 hypothetical protein phrog_733 excisionase integration and excision 1 25966 26394
YP_009214290.1 NC_028960_p17 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 14382 15175
YP_009214304.1 NC_028960_p31 hypothetical protein phrog_980 unknown function unknown function -1 27167 27379
YP_009214293.1 NC_028960_p20 minor tail protein phrog_106 minor tail protein tail 1 18584 19597
YP_009214356.1 NC_028960_p83 hypothetical protein phrog_6093 unknown function unknown function -1 49067 49213
YP_009214335.1 NC_028960_p62 hypothetical protein phrog_18682 unknown function unknown function -1 41570 41752
YP_009214341.1 NC_028960_p68 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 44186 44485
YP_009214284.1 NC_028960_p11 major capsid protein phrog_10 major head protein head and packaging 1 10735 11667
YP_009214319.1 NC_028960_p46 phosphoesterase phrog_221 metallo-phosphoesterase other -1 35906 36676
YP_009214348.1 NC_028960_p75 hypothetical protein singleton unknown function unknown function -1 45808 45939
YP_009214288.1 NC_028960_p15 hypothetical protein phrog_123 tail terminator connector 1 13022 13429
YP_009214352.1 NC_028960_p79 hypothetical protein phrog_2124 unknown function unknown function -1 46989 47129
YP_009214296.1 NC_028960_p23 hypothetical protein phrog_981 minor tail protein tail 1 21941 22249
YP_009214339.1 NC_028960_p66 hypothetical protein phrog_5957 unknown function unknown function -1 43093 43383
YP_009214360.1 NC_028960_p87 hypothetical protein phrog_8568 unknown function unknown function -1 50809 50982
YP_009214320.1 NC_028960_p47 hypothetical protein phrog_1167 phosphofructokinase other -1 36673 37140
YP_009214300.1 NC_028960_p27 integrase phrog_95 integrase integration and excision -1 24306 25799
YP_009214275.1 NC_028960_p2 hypothetical protein phrog_1260 minor tail protein tail 1 1396 2358
YP_009214357.1 NC_028960_p84 hypothetical protein phrog_6340 unknown function unknown function -1 49216 49629
YP_009214282.1 NC_028960_p9 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9305 10144
YP_009214317.1 NC_028960_p44 hypothetical protein phrog_5897 unknown function unknown function -1 35182 35283
YP_009214347.1 NC_028960_p74 hypothetical protein phrog_5476 unknown function unknown function -1 45500 45811
YP_009214313.1 NC_028960_p40 ribonucleoside reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32376 34466
YP_009214311.1 NC_028960_p38 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 31045 31764
YP_009214299.1 NC_028960_p26 hypothetical protein phrog_2235 minor tail protein tail 1 23970 24254
YP_009214274.1 NC_028960_p1 hypothetical protein phrog_226 minor tail protein tail 1 840 1289
YP_009214291.1 NC_028960_p18 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 14382 14762
YP_009214326.1 NC_028960_p53 hypothetical protein phrog_5993 unknown function unknown function -1 38987 39244
YP_009214350.1 NC_028960_p77 hypothetical protein phrog_6186 unknown function unknown function -1 46026 46652
YP_009214358.1 NC_028960_p85 hypothetical protein phrog_1445 unknown function unknown function -1 49660 49737
YP_009214331.1 NC_028960_p58 hypothetical protein phrog_1498 unknown function unknown function -1 40114 40266
YP_009214286.1 NC_028960_p13 hypothetical protein phrog_320 head closure Hc1 connector 1 12148 12609
YP_009214333.1 NC_028960_p60 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40547 41353
YP_009214328.1 NC_028960_p55 hypothetical protein phrog_4670 unknown function unknown function -1 39408 39545
YP_009214330.1 NC_028960_p57 hypothetical protein phrog_4539 unknown function unknown function -1 40019 40117
YP_009214355.1 NC_028960_p82 hypothetical protein phrog_3906 unknown function unknown function -1 48142 48975
YP_009214346.1 NC_028960_p73 hypothetical protein phrog_2869 unknown function unknown function -1 45328 45480
YP_009214303.1 NC_028960_p30 hypothetical protein phrog_542 unknown function unknown function -1 27012 27170
YP_009214307.1 NC_028960_p34 hypothetical protein phrog_14871 unknown function unknown function -1 28183 28512
YP_009214310.1 NC_028960_p37 HTH DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30789 31043
YP_009214316.1 NC_028960_p43 hypothetical protein phrog_1454 unknown function unknown function -1 34959 35195
YP_009214312.1 NC_028960_p39 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 31820 32347
YP_009214298.1 NC_028960_p25 minor tail protein phrog_2683 minor tail protein tail 1 22563 23960
YP_009214327.1 NC_028960_p54 hypothetical protein phrog_15660 unknown function unknown function -1 39247 39411
YP_009214289.1 NC_028960_p16 major tail subunit phrog_117 major tail protein tail 1 13444 14271
YP_009214323.1 NC_028960_p50 hypothetical protein phrog_5270 unknown function unknown function -1 37816 38106
YP_009214337.1 NC_028960_p64 hypothetical protein phrog_642 unknown function unknown function -1 41975 42277
YP_009214308.1 NC_028960_p35 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28533 30392
YP_009214321.1 NC_028960_p48 hypothetical protein phrog_4195 unknown function unknown function -1 37137 37547
YP_009214318.1 NC_028960_p45 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35283 35909
YP_009214344.1 NC_028960_p71 hypothetical protein phrog_6322 unknown function unknown function -1 44975 45127
YP_009214294.1 NC_028960_p21 minor tail protein phrog_110 minor tail protein tail 1 19674 21470
YP_009214334.1 NC_028960_p61 hypothetical protein phrog_2903 unknown function unknown function -1 41340 41570
YP_009214338.1 NC_028960_p65 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42281 43096
YP_009214297.1 NC_028960_p24 hypothetical protein phrog_404 minor tail protein tail 1 22156 22566
YP_009214359.1 NC_028960_p86 hypothetical protein phrog_3471 unknown function unknown function -1 49740 49946
YP_009214349.1 NC_028960_p76 hypothetical protein singleton unknown function unknown function -1 45902 46015
YP_009214292.1 NC_028960_p19 tape measure protein phrog_305 tail length tape measure protein tail 1 15180 18518
YP_009214302.1 NC_028960_p29 cytidine deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 26494 27003
YP_009214287.1 NC_028960_p14 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 12609 13022
YP_009214340.1 NC_028960_p67 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 43396 43926
YP_009214351.1 NC_028960_p78 hypothetical protein phrog_9135 unknown function unknown function -1 46771 46989
YP_009214354.1 NC_028960_p81 hypothetical protein phrog_5927 unknown function unknown function -1 47811 48095