Genomic map of Mycobacterium phage PopTart (NC_028961)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028961
Definition
Mycobacterium phage PopTart, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
55094
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
95
%GC
61.64
Number of singletons
3
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009214371.1 NC_028961_p11 major tail protein phrog_476 major tail protein tail 1 7631 8440
YP_009214454.1 NC_028961_p94 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 54004 54627
YP_009214400.1 NC_028961_p40 hypothetical protein phrog_1948 unknown function unknown function -1 32806 33261
YP_009214398.1 NC_028961_p38 hypothetical protein singleton unknown function unknown function -1 30942 31160
YP_009214436.1 NC_028961_p76 hypothetical protein phrog_7842 unknown function unknown function 1 46987 47160
YP_009214407.1 NC_028961_p47 hypothetical protein phrog_1797 unknown function unknown function 1 36238 36744
YP_009214426.1 NC_028961_p66 hypothetical protein phrog_2080 unknown function unknown function 1 44400 44669
YP_009214422.1 NC_028961_p62 hypothetical protein singleton unknown function unknown function 1 41808 42023
YP_009214394.1 NC_028961_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29476 29709
YP_009214382.1 NC_028961_p22 minor tail protein phrog_2005 minor tail protein tail 1 23410 23664
YP_009214392.1 NC_028961_p32 holin phrog_443 holin lysis 1 28847 29080
YP_009214393.1 NC_028961_p33 hypothetical protein phrog_404 minor tail protein tail 1 29077 29451
YP_009214385.1 NC_028961_p25 helix-turn-helix DNA binding domain phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25296 25487
YP_009214425.1 NC_028961_p65 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 43552 44403
YP_009214443.1 NC_028961_p83 hypothetical protein phrog_2247 unknown function unknown function 1 48748 48999
YP_009214419.1 NC_028961_p59 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40248 40610
YP_009214449.1 NC_028961_p89 hypothetical protein phrog_1186 unknown function unknown function 1 51020 51433
YP_009214389.1 NC_028961_p29 hypothetical protein phrog_747 unknown function unknown function 1 26314 26547
YP_009214432.1 NC_028961_p72 hypothetical protein phrog_16849 unknown function unknown function 1 45817 45957
YP_009214388.1 NC_028961_p28 hypothetical protein phrog_1172 unknown function unknown function 1 26073 26240
YP_009214380.1 NC_028961_p20 minor tail protein phrog_2106 minor tail protein tail 1 21862 23028
YP_009214418.1 NC_028961_p58 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 39673 40251
YP_009214368.1 NC_028961_p8 head-to-tail connector phrog_763 head-tail adaptor connector 1 6446 6778
YP_009214403.1 NC_028961_p43 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 34554 35558
YP_009214404.1 NC_028961_p44 hypothetical protein phrog_2025 unknown function unknown function 1 35555 35773
YP_009214377.1 NC_028961_p17 minor tail protein phrog_732 minor tail protein tail 1 16618 17448
YP_009214429.1 NC_028961_p69 hypothetical protein phrog_1546 unknown function unknown function 1 45137 45511
YP_009214409.1 NC_028961_p49 hypothetical protein phrog_1849 unknown function unknown function 1 36990 37271
YP_009214446.1 NC_028961_p86 hypothetical protein phrog_1869 unknown function unknown function 1 50442 50609
YP_009214364.1 NC_028961_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3612 4367
YP_009214427.1 NC_028961_p67 hypothetical protein phrog_11384 unknown function unknown function 1 44662 44949
YP_009214430.1 NC_028961_p70 hypothetical protein phrog_24020 unknown function unknown function 1 45504 45653
YP_009214383.1 NC_028961_p23 minor tail protein phrog_2012 minor tail protein tail 1 23678 24316
YP_009214365.1 NC_028961_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4393 5043
YP_009214386.1 NC_028961_p26 hypothetical protein phrog_411 unknown function unknown function 1 25639 25923
YP_009214437.1 NC_028961_p77 hypothetical protein phrog_647 unknown function unknown function 1 47157 47441
YP_009214384.1 NC_028961_p24 minor tail protein phrog_12500 minor tail protein tail 1 24313 25278
YP_009214376.1 NC_028961_p16 minor tail protein phrog_110 minor tail protein tail 1 14854 16563
YP_009214445.1 NC_028961_p85 hypothetical protein phrog_1467 unknown function unknown function 1 49627 50298
YP_009214410.1 NC_028961_p50 hypothetical protein phrog_7605 unknown function unknown function 1 37268 37456
YP_009214455.1 NC_028961_p95 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 54627 54953
YP_009214431.1 NC_028961_p71 hypothetical protein phrog_3647 unknown function unknown function 1 45650 45811
YP_009214435.1 NC_028961_p75 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 46629 47000
YP_009214374.1 NC_028961_p14 tape measure protein phrog_1942 tail length tape measure protein tail 1 9532 13062
YP_009214433.1 NC_028961_p73 hypothetical protein phrog_647 unknown function unknown function 1 46094 46378
YP_009214442.1 NC_028961_p82 hypothetical protein phrog_12331 unknown function unknown function 1 48189 48371
YP_009214413.1 NC_028961_p53 hypothetical protein phrog_2096 unknown function unknown function 1 38193 38693
YP_009214448.1 NC_028961_p88 hypothetical protein phrog_1694 unknown function unknown function 1 50826 51023
YP_009214363.1 NC_028961_p3 portal protein phrog_104 portal protein head and packaging 1 2255 3625
YP_009214405.1 NC_028961_p45 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 35859 36056
YP_009214447.1 NC_028961_p87 hypothetical protein phrog_6481 unknown function unknown function 1 50616 50813
YP_009214411.1 NC_028961_p51 hypothetical protein phrog_658 unknown function unknown function 1 37460 37795
YP_009214406.1 NC_028961_p46 hypothetical protein phrog_1816 unknown function unknown function 1 36053 36241
YP_009214366.1 NC_028961_p6 major capsid protein phrog_267 major head protein head and packaging 1 5062 5883
YP_009214440.1 NC_028961_p80 hypothetical protein phrog_1091 unknown function unknown function 1 47838 48050
YP_009214387.1 NC_028961_p27 hypothetical protein phrog_932 unknown function unknown function 1 25930 26076
YP_009214453.1 NC_028961_p93 hypothetical protein phrog_3297 kinase other 1 53534 54007
YP_009214381.1 NC_028961_p21 minor tail protein phrog_240 head protein head and packaging 1 23046 23387
YP_009214372.1 NC_028961_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8577 9513
YP_009214402.1 NC_028961_p42 CRO protein phrog_3 transcriptional repressor transcription regulation 1 34263 34496
YP_009214379.1 NC_028961_p19 D-ala-D-ala-decarboxylase phrog_382 minor tail protein with lysin activity tail 1 19979 21865
YP_009214396.1 NC_028961_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30601 30819
YP_009214362.1 NC_028961_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 587 2224
YP_009214434.1 NC_028961_p74 hypothetical protein phrog_722 unknown function unknown function 1 46371 46559
YP_009214414.1 NC_028961_p54 HTH DNA binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 38690 39055
YP_009214421.1 NC_028961_p61 hypothetical protein phrog_2070 unknown function unknown function 1 41512 41682
YP_009214451.1 NC_028961_p91 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 51669 53279
YP_009214391.1 NC_028961_p31 lysin B phrog_102 endolysin lysis 1 27830 28831
YP_009214450.1 NC_028961_p90 hypothetical protein phrog_1385 unknown function unknown function 1 51430 51672
YP_009214444.1 NC_028961_p84 GIY-YIG DNA binding endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 49091 49630
YP_009214375.1 NC_028961_p15 minor tail protein phrog_106 minor tail protein tail 1 13063 14772
YP_009214415.1 NC_028961_p55 hypothetical protein phrog_25287 unknown function unknown function 1 39065 39217
YP_009214417.1 NC_028961_p57 hypothetical protein phrog_2632 unknown function unknown function 1 39434 39676
YP_009214438.1 NC_028961_p78 hypothetical protein phrog_2939 unknown function unknown function 1 47438 47650
YP_009214412.1 NC_028961_p52 WhiB family transcription factor phrog_1333 unknown function unknown function 1 37792 38196
YP_009214428.1 NC_028961_p68 hypothetical protein phrog_1943 unknown function unknown function 1 44946 45140
YP_009214397.1 NC_028961_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30812 30904
YP_009214378.1 NC_028961_p18 minor tail protein phrog_346 minor tail protein tail 1 17445 19982
YP_009214408.1 NC_028961_p48 hypothetical protein phrog_17015 unknown function unknown function 1 36772 36909
YP_009214390.1 NC_028961_p30 lysin A phrog_700 endolysin lysis 1 26544 27830
YP_009214370.1 NC_028961_p10 head-to-tail connector phrog_813 head-tail adaptor connector 1 7097 7504
YP_009214420.1 NC_028961_p60 DNA methylase phrog_67 DNA methyltransferase other 1 40607 41515
YP_009214367.1 NC_028961_p7 head-to-tail connector phrog_2377 head-tail adaptor Ad1 connector 1 5883 6449
YP_009214369.1 NC_028961_p9 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6781 7110
YP_009214441.1 NC_028961_p81 hypothetical protein phrog_1545 unknown function unknown function 1 48055 48192
YP_009214439.1 NC_028961_p79 hypothetical protein phrog_1901 unknown function unknown function 1 47647 47841
YP_009214361.1 NC_028961_p1 terminase small subunit phrog_226 minor tail protein tail 1 109 564
YP_009214395.1 NC_028961_p35 DnaQ-like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29696 30517
YP_009214424.1 NC_028961_p64 hypothetical protein phrog_2451 unknown function unknown function 1 43414 43548
YP_009214399.1 NC_028961_p39 integrase phrog_1 integrase integration and excision 1 31428 32729
YP_009214423.1 NC_028961_p63 DNA methylase phrog_67 DNA methyltransferase other 1 42020 43417
YP_009214416.1 NC_028961_p56 hypothetical protein singleton unknown function unknown function 1 39288 39437
YP_009214452.1 NC_028961_p92 hypothetical protein phrog_1693 unknown function unknown function 1 53282 53494
YP_009214373.1 NC_028961_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8577 9128
YP_009214401.1 NC_028961_p41 immunity repressor phrog_2838 transcriptional repressor transcription regulation -1 33524 34264