| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028961 |
Definition |
Mycobacterium phage PopTart, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
55094 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
61.64 |
Number of singletons |
3 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009214371.1 | NC_028961_p11 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7631 | 8440 |
| YP_009214454.1 | NC_028961_p94 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54004 | 54627 |
| YP_009214400.1 | NC_028961_p40 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 32806 | 33261 |
| YP_009214398.1 | NC_028961_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30942 | 31160 |
| YP_009214436.1 | NC_028961_p76 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 46987 | 47160 |
| YP_009214407.1 | NC_028961_p47 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36238 | 36744 |
| YP_009214426.1 | NC_028961_p66 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 44400 | 44669 |
| YP_009214422.1 | NC_028961_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41808 | 42023 |
| YP_009214394.1 | NC_028961_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29476 | 29709 |
| YP_009214382.1 | NC_028961_p22 | minor tail protein | phrog_2005 | minor tail protein | tail | 1 | 23410 | 23664 |
| YP_009214392.1 | NC_028961_p32 | holin | phrog_443 | holin | lysis | 1 | 28847 | 29080 |
| YP_009214393.1 | NC_028961_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29077 | 29451 |
| YP_009214385.1 | NC_028961_p25 | helix-turn-helix DNA binding domain | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25296 | 25487 |
| YP_009214425.1 | NC_028961_p65 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 43552 | 44403 |
| YP_009214443.1 | NC_028961_p83 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 48748 | 48999 |
| YP_009214419.1 | NC_028961_p59 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40248 | 40610 |
| YP_009214449.1 | NC_028961_p89 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 51020 | 51433 |
| YP_009214389.1 | NC_028961_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26314 | 26547 |
| YP_009214432.1 | NC_028961_p72 | hypothetical protein | phrog_16849 | unknown function | unknown function | 1 | 45817 | 45957 |
| YP_009214388.1 | NC_028961_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26073 | 26240 |
| YP_009214380.1 | NC_028961_p20 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 21862 | 23028 |
| YP_009214418.1 | NC_028961_p58 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39673 | 40251 |
| YP_009214368.1 | NC_028961_p8 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| YP_009214403.1 | NC_028961_p43 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34554 | 35558 |
| YP_009214404.1 | NC_028961_p44 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35555 | 35773 |
| YP_009214377.1 | NC_028961_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16618 | 17448 |
| YP_009214429.1 | NC_028961_p69 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 45137 | 45511 |
| YP_009214409.1 | NC_028961_p49 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 36990 | 37271 |
| YP_009214446.1 | NC_028961_p86 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 50442 | 50609 |
| YP_009214364.1 | NC_028961_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_009214427.1 | NC_028961_p67 | hypothetical protein | phrog_11384 | unknown function | unknown function | 1 | 44662 | 44949 |
| YP_009214430.1 | NC_028961_p70 | hypothetical protein | phrog_24020 | unknown function | unknown function | 1 | 45504 | 45653 |
| YP_009214383.1 | NC_028961_p23 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 23678 | 24316 |
| YP_009214365.1 | NC_028961_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4393 | 5043 |
| YP_009214386.1 | NC_028961_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25639 | 25923 |
| YP_009214437.1 | NC_028961_p77 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 47157 | 47441 |
| YP_009214384.1 | NC_028961_p24 | minor tail protein | phrog_12500 | minor tail protein | tail | 1 | 24313 | 25278 |
| YP_009214376.1 | NC_028961_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14854 | 16563 |
| YP_009214445.1 | NC_028961_p85 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 49627 | 50298 |
| YP_009214410.1 | NC_028961_p50 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 37268 | 37456 |
| YP_009214455.1 | NC_028961_p95 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 54627 | 54953 |
| YP_009214431.1 | NC_028961_p71 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 45650 | 45811 |
| YP_009214435.1 | NC_028961_p75 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 46629 | 47000 |
| YP_009214374.1 | NC_028961_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9532 | 13062 |
| YP_009214433.1 | NC_028961_p73 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 46094 | 46378 |
| YP_009214442.1 | NC_028961_p82 | hypothetical protein | phrog_12331 | unknown function | unknown function | 1 | 48189 | 48371 |
| YP_009214413.1 | NC_028961_p53 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38193 | 38693 |
| YP_009214448.1 | NC_028961_p88 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 50826 | 51023 |
| YP_009214363.1 | NC_028961_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_009214405.1 | NC_028961_p45 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35859 | 36056 |
| YP_009214447.1 | NC_028961_p87 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 50616 | 50813 |
| YP_009214411.1 | NC_028961_p51 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37460 | 37795 |
| YP_009214406.1 | NC_028961_p46 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36053 | 36241 |
| YP_009214366.1 | NC_028961_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| YP_009214440.1 | NC_028961_p80 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 47838 | 48050 |
| YP_009214387.1 | NC_028961_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25930 | 26076 |
| YP_009214453.1 | NC_028961_p93 | hypothetical protein | phrog_3297 | kinase | other | 1 | 53534 | 54007 |
| YP_009214381.1 | NC_028961_p21 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 23046 | 23387 |
| YP_009214372.1 | NC_028961_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8577 | 9513 |
| YP_009214402.1 | NC_028961_p42 | CRO protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34263 | 34496 |
| YP_009214379.1 | NC_028961_p19 | D-ala-D-ala-decarboxylase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19979 | 21865 |
| YP_009214396.1 | NC_028961_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30601 | 30819 |
| YP_009214362.1 | NC_028961_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_009214434.1 | NC_028961_p74 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 46371 | 46559 |
| YP_009214414.1 | NC_028961_p54 | HTH DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38690 | 39055 |
| YP_009214421.1 | NC_028961_p61 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 41512 | 41682 |
| YP_009214451.1 | NC_028961_p91 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 51669 | 53279 |
| YP_009214391.1 | NC_028961_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27830 | 28831 |
| YP_009214450.1 | NC_028961_p90 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 51430 | 51672 |
| YP_009214444.1 | NC_028961_p84 | GIY-YIG DNA binding endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49091 | 49630 |
| YP_009214375.1 | NC_028961_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13063 | 14772 |
| YP_009214415.1 | NC_028961_p55 | hypothetical protein | phrog_25287 | unknown function | unknown function | 1 | 39065 | 39217 |
| YP_009214417.1 | NC_028961_p57 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 39434 | 39676 |
| YP_009214438.1 | NC_028961_p78 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 47438 | 47650 |
| YP_009214412.1 | NC_028961_p52 | WhiB family transcription factor | phrog_1333 | unknown function | unknown function | 1 | 37792 | 38196 |
| YP_009214428.1 | NC_028961_p68 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 44946 | 45140 |
| YP_009214397.1 | NC_028961_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30812 | 30904 |
| YP_009214378.1 | NC_028961_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17445 | 19982 |
| YP_009214408.1 | NC_028961_p48 | hypothetical protein | phrog_17015 | unknown function | unknown function | 1 | 36772 | 36909 |
| YP_009214390.1 | NC_028961_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26544 | 27830 |
| YP_009214370.1 | NC_028961_p10 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| YP_009214420.1 | NC_028961_p60 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 40607 | 41515 |
| YP_009214367.1 | NC_028961_p7 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| YP_009214369.1 | NC_028961_p9 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7110 |
| YP_009214441.1 | NC_028961_p81 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 48055 | 48192 |
| YP_009214439.1 | NC_028961_p79 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 47647 | 47841 |
| YP_009214361.1 | NC_028961_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009214395.1 | NC_028961_p35 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29696 | 30517 |
| YP_009214424.1 | NC_028961_p64 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 43414 | 43548 |
| YP_009214399.1 | NC_028961_p39 | integrase | phrog_1 | integrase | integration and excision | 1 | 31428 | 32729 |
| YP_009214423.1 | NC_028961_p63 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 42020 | 43417 |
| YP_009214416.1 | NC_028961_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39288 | 39437 |
| YP_009214452.1 | NC_028961_p92 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 53282 | 53494 |
| YP_009214373.1 | NC_028961_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8577 | 9128 |
| YP_009214401.1 | NC_028961_p41 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 33524 | 34264 |