| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028965 |
Definition |
Mycobacterium phage Pioneer, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53219 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
62.58 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009214749.1 | NC_028965_p82 | hypothetical protein | phrog_1342 | unknown function | unknown function | -1 | 46027 | 46254 |
| YP_009214761.1 | NC_028965_p94 | hypothetical protein | phrog_3831 | unknown function | unknown function | -1 | 50146 | 50376 |
| YP_009214673.1 | NC_028965_p6 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3230 | 4192 |
| YP_009214699.1 | NC_028965_p32 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 24410 | 26176 |
| YP_009214730.1 | NC_028965_p63 | hypothetical protein | phrog_17507 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39670 | 39867 |
| YP_009214671.1 | NC_028965_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2335 | 2628 |
| YP_009214707.1 | NC_028965_p40 | hypothetical protein | phrog_9466 | unknown function | unknown function | -1 | 28747 | 28950 |
| YP_009214701.1 | NC_028965_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26558 | 26821 |
| YP_009214740.1 | NC_028965_p73 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42650 | 42868 |
| YP_009214726.1 | NC_028965_p59 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38785 | 39168 |
| YP_009214752.1 | NC_028965_p85 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 47292 | 47561 |
| YP_009214760.1 | NC_028965_p93 | hypothetical protein | phrog_10771 | unknown function | unknown function | -1 | 49772 | 50143 |
| YP_009214696.1 | NC_028965_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21782 | 23572 |
| YP_009214751.1 | NC_028965_p84 | hypothetical protein | phrog_363 | DNA methyltransferase | other | -1 | 46740 | 47288 |
| YP_009214704.1 | NC_028965_p37 | hypothetical protein | phrog_2697 | unknown function | unknown function | -1 | 28055 | 28255 |
| YP_009214677.1 | NC_028965_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 6179 | 7759 |
| YP_009214744.1 | NC_028965_p77 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 44964 | 45128 |
| YP_009214743.1 | NC_028965_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44180 | 44716 |
| YP_009214720.1 | NC_028965_p53 | hypothetical protein | phrog_10515 | unknown function | unknown function | -1 | 36202 | 36342 |
| YP_009214709.1 | NC_028965_p42 | hypothetical protein | phrog_7968 | unknown function | unknown function | -1 | 29311 | 29475 |
| YP_009214713.1 | NC_028965_p46 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31832 | 32158 |
| YP_009214682.1 | NC_028965_p15 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12300 | 12833 |
| YP_009214693.1 | NC_028965_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17623 | 20532 |
| YP_009214750.1 | NC_028965_p83 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | -1 | 46274 | 46789 |
| YP_009214712.1 | NC_028965_p45 | hypothetical protein | phrog_4326 | unknown function | unknown function | -1 | 31542 | 31832 |
| YP_009214691.1 | NC_028965_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16647 | 17494 |
| YP_009214754.1 | NC_028965_p87 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47935 | 48696 |
| YP_009214732.1 | NC_028965_p65 | hypothetical protein | phrog_18212 | unknown function | unknown function | -1 | 40231 | 40368 |
| YP_009214755.1 | NC_028965_p88 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48698 | 48832 |
| YP_009214697.1 | NC_028965_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23590 | 24039 |
| YP_009214725.1 | NC_028965_p58 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38322 | 38783 |
| YP_009214705.1 | NC_028965_p38 | hypothetical protein | phrog_10331 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28252 | 28566 |
| YP_009214721.1 | NC_028965_p54 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36339 | 37004 |
| YP_009214729.1 | NC_028965_p62 | hypothetical protein | phrog_4886 | unknown function | unknown function | -1 | 39494 | 39673 |
| YP_009214679.1 | NC_028965_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 8157 | 9929 |
| YP_009214703.1 | NC_028965_p36 | ParB | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 27611 | 27889 |
| YP_009214688.1 | NC_028965_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15109 | 15498 |
| YP_009214722.1 | NC_028965_p55 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 37008 | 37778 |
| YP_009214756.1 | NC_028965_p89 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 48838 | 49083 |
| YP_009214733.1 | NC_028965_p66 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 40368 | 40517 |
| YP_009214689.1 | NC_028965_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15495 | 15917 |
| YP_009214684.1 | NC_028965_p17 | hypothetical protein | phrog_3101 | unknown function | unknown function | 1 | 13946 | 14170 |
| YP_009214718.1 | NC_028965_p51 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35767 | 35970 |
| YP_009214672.1 | NC_028965_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2669 | 3142 |
| YP_009214747.1 | NC_028965_p80 | hypothetical protein | phrog_3963 | unknown function | unknown function | -1 | 45504 | 45794 |
| YP_009214711.1 | NC_028965_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29745 | 31538 |
| YP_009214680.1 | NC_028965_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9926 | 11413 |
| YP_009214727.1 | NC_028965_p60 | hypothetical protein | phrog_23055 | unknown function | unknown function | -1 | 39161 | 39292 |
| YP_009214739.1 | NC_028965_p72 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42360 | 42638 |
| YP_009214710.1 | NC_028965_p43 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29475 | 29714 |
| YP_009214758.1 | NC_028965_p91 | hypothetical protein | phrog_10931 | unknown function | unknown function | -1 | 49471 | 49605 |
| YP_009214687.1 | NC_028965_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14741 | 15109 |
| YP_009214674.1 | NC_028965_p7 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 4192 | 5223 |
| YP_009214766.1 | NC_028965_p99 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51537 | 51833 |
| YP_009214676.1 | NC_028965_p9 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 6039 | 6179 |
| YP_009214702.1 | NC_028965_p35 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 27076 | 27618 |
| YP_009214685.1 | NC_028965_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14173 | 14550 |
| YP_009214746.1 | NC_028965_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45322 | 45501 |
| YP_009214734.1 | NC_028965_p67 | hypothetical protein | phrog_8981 | unknown function | unknown function | -1 | 40502 | 40678 |
| YP_009214748.1 | NC_028965_p81 | hypothetical protein | phrog_8086 | unknown function | unknown function | -1 | 45794 | 46030 |
| YP_009214753.1 | NC_028965_p86 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47657 | 47920 |
| YP_009214692.1 | NC_028965_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16647 | 17042 |
| YP_009214763.1 | NC_028965_p96 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50503 | 51213 |
| YP_009214678.1 | NC_028965_p11 | holin | phrog_526 | holin | lysis | 1 | 7756 | 8142 |
| YP_009214698.1 | NC_028965_p31 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24041 | 24409 |
| YP_009214681.1 | NC_028965_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11410 | 12270 |
| YP_009214690.1 | NC_028965_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15933 | 16529 |
| YP_009214742.1 | NC_028965_p75 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 43738 | 44133 |
| YP_009214762.1 | NC_028965_p95 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 50366 | 50494 |
| YP_009214757.1 | NC_028965_p90 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49107 | 49454 |
| YP_009214723.1 | NC_028965_p56 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37775 | 38053 |
| YP_009214716.1 | NC_028965_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33153 | 33716 |
| YP_009214728.1 | NC_028965_p61 | hypothetical protein | phrog_10806 | unknown function | unknown function | -1 | 39289 | 39501 |
| YP_009214717.1 | NC_028965_p50 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33728 | 35767 |
| YP_009214715.1 | NC_028965_p48 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32369 | 33073 |
| YP_009214719.1 | NC_028965_p52 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35942 | 36205 |
| YP_009214765.1 | NC_028965_p98 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51423 | 51506 |
| YP_009214706.1 | NC_028965_p39 | hypothetical protein | phrog_10689 | unknown function | unknown function | -1 | 28547 | 28750 |
| YP_009214669.1 | NC_028965_p2 | hypothetical protein | phrog_5234 | unknown function | unknown function | 1 | 1050 | 2114 |
| YP_009214745.1 | NC_028965_p78 | hypothetical protein | phrog_7865 | unknown function | unknown function | -1 | 45158 | 45322 |
| YP_009214737.1 | NC_028965_p70 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41389 | 42198 |
| YP_009214668.1 | NC_028965_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 379 | 1161 |
| YP_009214764.1 | NC_028965_p97 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 51216 | 51419 |
| YP_009214724.1 | NC_028965_p57 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 38050 | 38322 |
| YP_009214735.1 | NC_028965_p68 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40675 | 40824 |
| YP_009214731.1 | NC_028965_p64 | hypothetical protein | phrog_9791 | unknown function | unknown function | -1 | 40079 | 40234 |
| YP_009214694.1 | NC_028965_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20560 | 21573 |
| YP_009214741.1 | NC_028965_p74 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42899 | 43735 |
| YP_009214670.1 | NC_028965_p3 | hypothetical protein | phrog_10336 | unknown function | unknown function | 1 | 2111 | 2338 |
| YP_009214686.1 | NC_028965_p19 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 14547 | 14744 |
| YP_009214700.1 | NC_028965_p33 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 26242 | 26436 |
| YP_009214714.1 | NC_028965_p47 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32155 | 32367 |
| YP_009214675.1 | NC_028965_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 5227 | 5898 |
| YP_009214695.1 | NC_028965_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21570 | 21782 |
| YP_009214708.1 | NC_028965_p41 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28947 | 29318 |
| YP_009214736.1 | NC_028965_p69 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40991 | 41377 |
| YP_009214738.1 | NC_028965_p71 | hypothetical protein | phrog_9978 | unknown function | unknown function | -1 | 42199 | 42363 |
| YP_009214683.1 | NC_028965_p16 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12881 | 13840 |
| YP_009214759.1 | NC_028965_p92 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49602 | 49769 |