Genomic map of Mycobacterium phage Pioneer (NC_028965)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028965
Definition
Mycobacterium phage Pioneer, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53219
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
99
%GC
62.58
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009214749.1 NC_028965_p82 hypothetical protein phrog_1342 unknown function unknown function -1 46027 46254
YP_009214761.1 NC_028965_p94 hypothetical protein phrog_3831 unknown function unknown function -1 50146 50376
YP_009214673.1 NC_028965_p6 minor tail protein phrog_1260 minor tail protein tail 1 3230 4192
YP_009214699.1 NC_028965_p32 minor tail protein phrog_737 minor tail protein tail 1 24410 26176
YP_009214730.1 NC_028965_p63 hypothetical protein phrog_17507 endonuclease VII DNA, RNA and nucleotide metabolism -1 39670 39867
YP_009214671.1 NC_028965_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2335 2628
YP_009214707.1 NC_028965_p40 hypothetical protein phrog_9466 unknown function unknown function -1 28747 28950
YP_009214701.1 NC_028965_p34 hypothetical protein singleton unknown function unknown function 1 26558 26821
YP_009214740.1 NC_028965_p73 hypothetical protein phrog_642 unknown function unknown function -1 42650 42868
YP_009214726.1 NC_028965_p59 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38785 39168
YP_009214752.1 NC_028965_p85 hypothetical protein phrog_3256 unknown function unknown function -1 47292 47561
YP_009214760.1 NC_028965_p93 hypothetical protein phrog_10771 unknown function unknown function -1 49772 50143
YP_009214696.1 NC_028965_p29 minor tail protein phrog_110 minor tail protein tail 1 21782 23572
YP_009214751.1 NC_028965_p84 hypothetical protein phrog_363 DNA methyltransferase other -1 46740 47288
YP_009214704.1 NC_028965_p37 hypothetical protein phrog_2697 unknown function unknown function -1 28055 28255
YP_009214677.1 NC_028965_p10 lysin A phrog_317 endolysin lysis 1 6179 7759
YP_009214744.1 NC_028965_p77 hypothetical protein phrog_1173 unknown function unknown function -1 44964 45128
YP_009214743.1 NC_028965_p76 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44180 44716
YP_009214720.1 NC_028965_p53 hypothetical protein phrog_10515 unknown function unknown function -1 36202 36342
YP_009214709.1 NC_028965_p42 hypothetical protein phrog_7968 unknown function unknown function -1 29311 29475
YP_009214713.1 NC_028965_p46 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31832 32158
YP_009214682.1 NC_028965_p15 scaffold protein phrog_233 head scaffolding protein head and packaging 1 12300 12833
YP_009214693.1 NC_028965_p26 tape measure protein phrog_305 tail length tape measure protein tail 1 17623 20532
YP_009214750.1 NC_028965_p83 hypothetical protein phrog_1008 DNA methyltransferase other -1 46274 46789
YP_009214712.1 NC_028965_p45 hypothetical protein phrog_4326 unknown function unknown function -1 31542 31832
YP_009214691.1 NC_028965_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16647 17494
YP_009214754.1 NC_028965_p87 hypothetical protein phrog_421 unknown function unknown function -1 47935 48696
YP_009214732.1 NC_028965_p65 hypothetical protein phrog_18212 unknown function unknown function -1 40231 40368
YP_009214755.1 NC_028965_p88 hypothetical protein phrog_855 unknown function unknown function -1 48698 48832
YP_009214697.1 NC_028965_p30 hypothetical protein phrog_352 minor tail protein tail 1 23590 24039
YP_009214725.1 NC_028965_p58 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38322 38783
YP_009214705.1 NC_028965_p38 hypothetical protein phrog_10331 DNA binding protein DNA, RNA and nucleotide metabolism -1 28252 28566
YP_009214721.1 NC_028965_p54 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36339 37004
YP_009214729.1 NC_028965_p62 hypothetical protein phrog_4886 unknown function unknown function -1 39494 39673
YP_009214679.1 NC_028965_p12 terminase phrog_9 terminase large subunit head and packaging 1 8157 9929
YP_009214703.1 NC_028965_p36 ParB phrog_2639 Arc-like repressor transcription regulation 1 27611 27889
YP_009214688.1 NC_028965_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15109 15498
YP_009214722.1 NC_028965_p55 hypothetical protein phrog_221 metallo-phosphoesterase other -1 37008 37778
YP_009214756.1 NC_028965_p89 hypothetical protein phrog_3718 unknown function unknown function -1 48838 49083
YP_009214733.1 NC_028965_p66 hypothetical protein phrog_1498 unknown function unknown function -1 40368 40517
YP_009214689.1 NC_028965_p22 hypothetical protein phrog_123 tail terminator connector 1 15495 15917
YP_009214684.1 NC_028965_p17 hypothetical protein phrog_3101 unknown function unknown function 1 13946 14170
YP_009214718.1 NC_028965_p51 hypothetical protein phrog_2046 unknown function unknown function -1 35767 35970
YP_009214672.1 NC_028965_p5 hypothetical protein phrog_226 minor tail protein tail 1 2669 3142
YP_009214747.1 NC_028965_p80 hypothetical protein phrog_3963 unknown function unknown function -1 45504 45794
YP_009214711.1 NC_028965_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29745 31538
YP_009214680.1 NC_028965_p13 portal protein phrog_104 portal protein head and packaging 1 9926 11413
YP_009214727.1 NC_028965_p60 hypothetical protein phrog_23055 unknown function unknown function -1 39161 39292
YP_009214739.1 NC_028965_p72 hypothetical protein phrog_520 unknown function unknown function -1 42360 42638
YP_009214710.1 NC_028965_p43 hypothetical protein phrog_896 unknown function unknown function -1 29475 29714
YP_009214758.1 NC_028965_p91 hypothetical protein phrog_10931 unknown function unknown function -1 49471 49605
YP_009214687.1 NC_028965_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 14741 15109
YP_009214674.1 NC_028965_p7 hypothetical protein phrog_819 tail protein tail 1 4192 5223
YP_009214766.1 NC_028965_p99 hypothetical protein phrog_1676 unknown function unknown function -1 51537 51833
YP_009214676.1 NC_028965_p9 hypothetical protein phrog_1087 unknown function unknown function 1 6039 6179
YP_009214702.1 NC_028965_p35 ParA phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 27076 27618
YP_009214685.1 NC_028965_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 14173 14550
YP_009214746.1 NC_028965_p79 hypothetical protein singleton unknown function unknown function -1 45322 45501
YP_009214734.1 NC_028965_p67 hypothetical protein phrog_8981 unknown function unknown function -1 40502 40678
YP_009214748.1 NC_028965_p81 hypothetical protein phrog_8086 unknown function unknown function -1 45794 46030
YP_009214753.1 NC_028965_p86 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47657 47920
YP_009214692.1 NC_028965_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16647 17042
YP_009214763.1 NC_028965_p96 hypothetical protein phrog_1392 unknown function unknown function -1 50503 51213
YP_009214678.1 NC_028965_p11 holin phrog_526 holin lysis 1 7756 8142
YP_009214698.1 NC_028965_p31 hypothetical protein phrog_404 minor tail protein tail 1 24041 24409
YP_009214681.1 NC_028965_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11410 12270
YP_009214690.1 NC_028965_p23 major tail protein phrog_117 major tail protein tail 1 15933 16529
YP_009214742.1 NC_028965_p75 hypothetical protein phrog_1562 unknown function unknown function -1 43738 44133
YP_009214762.1 NC_028965_p95 hypothetical protein phrog_2124 unknown function unknown function -1 50366 50494
YP_009214757.1 NC_028965_p90 hypothetical protein phrog_586 unknown function unknown function -1 49107 49454
YP_009214723.1 NC_028965_p56 hypothetical protein phrog_474 phosphofructokinase other -1 37775 38053
YP_009214716.1 NC_028965_p49 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33153 33716
YP_009214728.1 NC_028965_p61 hypothetical protein phrog_10806 unknown function unknown function -1 39289 39501
YP_009214717.1 NC_028965_p50 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 33728 35767
YP_009214715.1 NC_028965_p48 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32369 33073
YP_009214719.1 NC_028965_p52 hypothetical protein phrog_499 unknown function unknown function -1 35942 36205
YP_009214765.1 NC_028965_p98 hypothetical protein phrog_1445 unknown function unknown function -1 51423 51506
YP_009214706.1 NC_028965_p39 hypothetical protein phrog_10689 unknown function unknown function -1 28547 28750
YP_009214669.1 NC_028965_p2 hypothetical protein phrog_5234 unknown function unknown function 1 1050 2114
YP_009214745.1 NC_028965_p78 hypothetical protein phrog_7865 unknown function unknown function -1 45158 45322
YP_009214737.1 NC_028965_p70 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41389 42198
YP_009214668.1 NC_028965_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 379 1161
YP_009214764.1 NC_028965_p97 hypothetical protein phrog_2499 unknown function unknown function -1 51216 51419
YP_009214724.1 NC_028965_p57 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 38050 38322
YP_009214735.1 NC_028965_p68 hypothetical protein phrog_397 unknown function unknown function -1 40675 40824
YP_009214731.1 NC_028965_p64 hypothetical protein phrog_9791 unknown function unknown function -1 40079 40234
YP_009214694.1 NC_028965_p27 minor tail protein phrog_106 minor tail protein tail 1 20560 21573
YP_009214741.1 NC_028965_p74 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42899 43735
YP_009214670.1 NC_028965_p3 hypothetical protein phrog_10336 unknown function unknown function 1 2111 2338
YP_009214686.1 NC_028965_p19 hypothetical protein phrog_830 head-tail connector protein connector 1 14547 14744
YP_009214700.1 NC_028965_p33 hypothetical protein phrog_2570 unknown function unknown function 1 26242 26436
YP_009214714.1 NC_028965_p47 hypothetical protein phrog_690 unknown function unknown function -1 32155 32367
YP_009214675.1 NC_028965_p8 hypothetical protein phrog_356 minor tail protein tail 1 5227 5898
YP_009214695.1 NC_028965_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21570 21782
YP_009214708.1 NC_028965_p41 hypothetical protein phrog_383 unknown function unknown function -1 28947 29318
YP_009214736.1 NC_028965_p69 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40991 41377
YP_009214738.1 NC_028965_p71 hypothetical protein phrog_9978 unknown function unknown function -1 42199 42363
YP_009214683.1 NC_028965_p16 capsid protein phrog_10 major head protein head and packaging 1 12881 13840
YP_009214759.1 NC_028965_p92 hypothetical protein phrog_519 unknown function unknown function -1 49602 49769