| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028966 |
Definition |
Tsukamurella phage TIN3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tinduovirus. |
DB of origin |
REFSEQ |
Length |
76269 |
Host Name |
Tsukamurella inchonensis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
109 |
%GC |
59.29 |
Number of singletons |
13 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009214795.1 | NC_028966_p29 | lysozyme | singleton | unknown function | unknown function | 1 | 32597 | 33106 |
| YP_009214797.1 | NC_028966_p31 | peptidase | phrog_6985 | endolysin | lysis | 1 | 34107 | 35003 |
| YP_009214817.1 | NC_028966_p51 | hypothetical protein | phrog_35101 | unknown function | unknown function | -1 | 43888 | 44163 |
| YP_009214810.1 | NC_028966_p44 | hypothetical protein | phrog_28426 | unknown function | unknown function | -1 | 40713 | 40913 |
| YP_009214854.1 | NC_028966_p88 | hypothetical protein | phrog_30996 | unknown function | unknown function | -1 | 64096 | 64224 |
| YP_009214875.1 | NC_028966_p109 | hypothetical protein | phrog_5362 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 75298 | 76269 |
| YP_009214784.1 | NC_028966_p18 | tape measure protein | phrog_5448 | tail length tape measure protein | tail | 1 | 13557 | 22286 |
| YP_009214868.1 | NC_028966_p102 | hypothetical protein | phrog_30484 | unknown function | unknown function | -1 | 71132 | 71380 |
| YP_009214869.1 | NC_028966_p103 | hypothetical protein | phrog_7062 | unknown function | unknown function | -1 | 71377 | 71655 |
| YP_009214824.1 | NC_028966_p58 | hypothetical protein | phrog_9303 | unknown function | unknown function | -1 | 48439 | 48744 |
| YP_009214845.1 | NC_028966_p79 | hypothetical protein | phrog_5298 | cobalamin biosynthesis protein | moron, auxiliary metabolic gene and host takeover | -1 | 57204 | 59114 |
| YP_009214768.1 | NC_028966_p2 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1474 | 3477 |
| YP_009214778.1 | NC_028966_p12 | hypothetical protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 10056 | 10553 |
| YP_009214855.1 | NC_028966_p89 | hypothetical protein | phrog_6708 | unknown function | unknown function | -1 | 64663 | 65586 |
| YP_009214769.1 | NC_028966_p3 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 3593 | 5317 |
| YP_009214808.1 | NC_028966_p42 | hypothetical protein | phrog_1673 | unknown function | unknown function | -1 | 39983 | 40231 |
| YP_009214872.1 | NC_028966_p106 | hypothetical protein | phrog_8352 | unknown function | unknown function | -1 | 74103 | 74234 |
| YP_009214802.1 | NC_028966_p36 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 36643 | 37839 |
| YP_009214807.1 | NC_028966_p41 | hypothetical protein | phrog_8142 | unknown function | unknown function | -1 | 39727 | 39972 |
| YP_009214851.1 | NC_028966_p85 | hypothetical protein | phrog_33965 | unknown function | unknown function | -1 | 62991 | 63215 |
| YP_009214774.1 | NC_028966_p8 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 7775 | 8980 |
| YP_009214818.1 | NC_028966_p52 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44170 | 45591 |
| YP_009214827.1 | NC_028966_p61 | hypothetical protein | phrog_6622 | unknown function | unknown function | -1 | 49084 | 49719 |
| YP_009214805.1 | NC_028966_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38730 | 38933 |
| YP_009214837.1 | NC_028966_p71 | hypothetical protein | phrog_6646 | unknown function | unknown function | -1 | 54258 | 54680 |
| YP_009214822.1 | NC_028966_p56 | hypothetical protein | phrog_6746 | unknown function | unknown function | -1 | 47776 | 48105 |
| YP_009214838.1 | NC_028966_p72 | hypothetical protein | phrog_1342 | unknown function | unknown function | -1 | 54799 | 55395 |
| YP_009214833.1 | NC_028966_p67 | hypothetical protein | phrog_7963 | unknown function | unknown function | -1 | 52307 | 52567 |
| YP_009214814.1 | NC_028966_p48 | DNA polymerase III beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 41956 | 43092 |
| YP_009214842.1 | NC_028966_p76 | hypothetical protein | phrog_1581 | unknown function | unknown function | -1 | 56123 | 56380 |
| YP_009214866.1 | NC_028966_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70486 | 70815 |
| YP_009214830.1 | NC_028966_p64 | hypothetical protein | phrog_6495 | unknown function | unknown function | -1 | 50486 | 50731 |
| YP_009214776.1 | NC_028966_p10 | hypothetical protein | phrog_6879 | head-tail connector protein | connector | 1 | 9265 | 9549 |
| YP_009214859.1 | NC_028966_p93 | hypothetical protein | phrog_32541 | unknown function | unknown function | -1 | 66425 | 66655 |
| YP_009214858.1 | NC_028966_p92 | hypothetical protein | phrog_33867 | unknown function | unknown function | -1 | 66176 | 66331 |
| YP_009214819.1 | NC_028966_p53 | hypothetical protein | phrog_8951 | unknown function | unknown function | -1 | 45662 | 45943 |
| YP_009214860.1 | NC_028966_p94 | hypothetical protein | phrog_31553 | unknown function | unknown function | -1 | 66655 | 67017 |
| YP_009214816.1 | NC_028966_p50 | DNA binding protein | phrog_6401 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43719 | 43904 |
| YP_009214820.1 | NC_028966_p54 | hypothetical protein | phrog_7649 | unknown function | unknown function | -1 | 45940 | 46446 |
| YP_009214777.1 | NC_028966_p11 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 9556 | 10068 |
| YP_009214874.1 | NC_028966_p108 | endonuclease | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 74718 | 75311 |
| YP_009214843.1 | NC_028966_p77 | hypothetical protein | phrog_13626 | unknown function | unknown function | -1 | 56380 | 56607 |
| YP_009214862.1 | NC_028966_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67535 | 67780 |
| YP_009214841.1 | NC_028966_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55859 | 56113 |
| YP_009214800.1 | NC_028966_p34 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 35936 | 36298 |
| YP_009214773.1 | NC_028966_p7 | hypothetical protein | phrog_5455 | head decoration | head and packaging | 1 | 7315 | 7761 |
| YP_009214847.1 | NC_028966_p81 | hypothetical protein | phrog_7008 | unknown function | unknown function | -1 | 60784 | 61410 |
| YP_009214801.1 | NC_028966_p35 | hypothetical protein | phrog_12343 | unknown function | unknown function | -1 | 36422 | 36646 |
| YP_009214840.1 | NC_028966_p74 | hypothetical protein | phrog_33539 | unknown function | unknown function | -1 | 55689 | 55862 |
| YP_009214826.1 | NC_028966_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48932 | 49087 |
| YP_009214865.1 | NC_028966_p99 | hypothetical protein | phrog_9619 | unknown function | unknown function | -1 | 70028 | 70489 |
| YP_009214835.1 | NC_028966_p69 | hypothetical protein | phrog_21323 | unknown function | unknown function | -1 | 53296 | 53448 |
| YP_009214793.1 | NC_028966_p27 | hypothetical protein | phrog_565 | holin | lysis | 1 | 31834 | 32271 |
| YP_009214811.1 | NC_028966_p45 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 40910 | 41476 |
| YP_009214794.1 | NC_028966_p28 | hypothetical protein | phrog_6901 | unknown function | unknown function | 1 | 32274 | 32600 |
| YP_009214806.1 | NC_028966_p40 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 38911 | 39630 |
| YP_009214780.1 | NC_028966_p14 | hypothetical protein | phrog_8128 | neck protein | connector | 1 | 11049 | 11384 |
| YP_009214848.1 | NC_028966_p82 | hypothetical protein | phrog_17918 | unknown function | unknown function | -1 | 61419 | 61619 |
| YP_009214861.1 | NC_028966_p95 | hypothetical protein | phrog_35038 | unknown function | unknown function | -1 | 67112 | 67447 |
| YP_009214799.1 | NC_028966_p33 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 35443 | 35943 |
| YP_009214863.1 | NC_028966_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 68891 | 69028 |
| YP_009214809.1 | NC_028966_p43 | hypothetical protein | phrog_3301 | pyrophosphatase | other | -1 | 40231 | 40716 |
| YP_009214791.1 | NC_028966_p25 | hypothetical protein | phrog_24602 | unknown function | unknown function | 1 | 31078 | 31383 |
| YP_009214852.1 | NC_028966_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 63218 | 63535 |
| YP_009214770.1 | NC_028966_p4 | hypothetical protein | phrog_32910 | unknown function | unknown function | 1 | 5304 | 5729 |
| YP_009214812.1 | NC_028966_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41437 | 41601 |
| YP_009214815.1 | NC_028966_p49 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 43096 | 43722 |
| YP_009214856.1 | NC_028966_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65731 | 65877 |
| YP_009214849.1 | NC_028966_p83 | hypothetical protein | phrog_7001 | unknown function | unknown function | -1 | 61628 | 61984 |
| YP_009214853.1 | NC_028966_p87 | hypothetical protein | phrog_38508 | unknown function | unknown function | -1 | 63784 | 64053 |
| YP_009214839.1 | NC_028966_p73 | hypothetical protein | phrog_32099 | unknown function | unknown function | -1 | 55408 | 55692 |
| YP_009214775.1 | NC_028966_p9 | hypothetical protein | phrog_7074 | head-tail connector protein | connector | 1 | 8996 | 9187 |
| YP_009214803.1 | NC_028966_p37 | hypothetical protein | phrog_6890 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 38018 | 38443 |
| YP_009214857.1 | NC_028966_p91 | hypothetical protein | phrog_33221 | unknown function | unknown function | -1 | 66035 | 66163 |
| YP_009214873.1 | NC_028966_p107 | hypothetical protein | phrog_7609 | unknown function | unknown function | -1 | 74227 | 74721 |
| YP_009214867.1 | NC_028966_p101 | hypothetical protein | phrog_33219 | unknown function | unknown function | -1 | 70812 | 71135 |
| YP_009214786.1 | NC_028966_p20 | hypothetical protein | phrog_1887 | tail protein | tail | 1 | 24817 | 26565 |
| YP_009214771.1 | NC_028966_p5 | hypothetical protein | phrog_6679 | unknown function | unknown function | 1 | 5753 | 6061 |
| YP_009214781.1 | NC_028966_p15 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 11388 | 12410 |
| YP_009214846.1 | NC_028966_p80 | ATPase family protein | phrog_5424 | ATPase | other | -1 | 59118 | 60710 |
| YP_009214832.1 | NC_028966_p66 | hypothetical protein | phrog_11430 | unknown function | unknown function | -1 | 52140 | 52310 |
| YP_009214831.1 | NC_028966_p65 | hypothetical protein | phrog_29332 | unknown function | unknown function | -1 | 50745 | 52022 |
| YP_009214792.1 | NC_028966_p26 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 31383 | 31748 |
| YP_009214829.1 | NC_028966_p63 | hypothetical protein | phrog_6792 | unknown function | unknown function | -1 | 49969 | 50502 |
| YP_009214850.1 | NC_028966_p84 | hypothetical protein | phrog_6032 | unknown function | unknown function | -1 | 62047 | 62994 |
| YP_009214864.1 | NC_028966_p98 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69061 | 69363 |
| YP_009214789.1 | NC_028966_p23 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 29776 | 30039 |
| YP_009214870.1 | NC_028966_p104 | primase | phrog_5311 | helicase | DNA, RNA and nucleotide metabolism | -1 | 71652 | 73904 |
| YP_009214836.1 | NC_028966_p70 | hypothetical protein | phrog_7690 | unknown function | unknown function | -1 | 53450 | 53851 |
| YP_009214871.1 | NC_028966_p105 | hypothetical protein | phrog_7096 | unknown function | unknown function | -1 | 73901 | 74125 |
| YP_009214782.1 | NC_028966_p16 | tail assembly protein | phrog_3096 | tail assembly chaperone | tail | 1 | 12602 | 13449 |
| YP_009214785.1 | NC_028966_p19 | hypothetical protein | phrog_5287 | minor tail protein | tail | 1 | 22286 | 24817 |
| YP_009214796.1 | NC_028966_p30 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 33224 | 34084 |
| YP_009214828.1 | NC_028966_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49716 | 49976 |
| YP_009214779.1 | NC_028966_p13 | hypothetical protein | phrog_5299 | unknown function | unknown function | 1 | 10550 | 11035 |
| YP_009214783.1 | NC_028966_p17 | tail assembly protein | phrog_3096 | tail assembly chaperone | tail | 1 | 12602 | 13186 |
| YP_009214813.1 | NC_028966_p47 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 41591 | 41959 |
| YP_009214798.1 | NC_028966_p32 | holin | phrog_2272 | unknown function | unknown function | 1 | 35000 | 35455 |
| YP_009214772.1 | NC_028966_p6 | hypothetical protein | phrog_976 | head maturation protease | head and packaging | 1 | 6076 | 7281 |
| YP_009214788.1 | NC_028966_p22 | hypothetical protein | phrog_36171 | unknown function | unknown function | 1 | 28496 | 29767 |
| YP_009214767.1 | NC_028966_p1 | small terminase subunit | phrog_6902 | terminase small subunit | head and packaging | 1 | 39 | 1493 |
| YP_009214821.1 | NC_028966_p55 | hypothetical protein | phrog_5686 | unknown function | unknown function | -1 | 46616 | 47659 |
| YP_009214790.1 | NC_028966_p24 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 30041 | 31081 |
| YP_009214787.1 | NC_028966_p21 | hypothetical protein | phrog_38533 | unknown function | unknown function | 1 | 26565 | 28496 |
| YP_009214844.1 | NC_028966_p78 | hypothetical protein | phrog_35199 | unknown function | unknown function | -1 | 56604 | 57125 |
| YP_009214825.1 | NC_028966_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48741 | 48932 |
| YP_009214834.1 | NC_028966_p68 | hypothetical protein | phrog_5406 | unknown function | unknown function | -1 | 52620 | 53315 |
| YP_009214823.1 | NC_028966_p57 | hypothetical protein | phrog_7044 | unknown function | unknown function | -1 | 48083 | 48439 |
| YP_009214804.1 | NC_028966_p38 | hypothetical protein | phrog_31056 | unknown function | unknown function | -1 | 38511 | 38645 |