Genomic map of Tsukamurella phage TIN3 (NC_028966)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028966
Definition
Tsukamurella phage TIN3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tinduovirus.
DB of origin
REFSEQ
Length
76269
Host Name
Tsukamurella inchonensis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
109
%GC
59.29
Number of singletons
13
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009214795.1 NC_028966_p29 lysozyme singleton unknown function unknown function 1 32597 33106
YP_009214797.1 NC_028966_p31 peptidase phrog_6985 endolysin lysis 1 34107 35003
YP_009214817.1 NC_028966_p51 hypothetical protein phrog_35101 unknown function unknown function -1 43888 44163
YP_009214810.1 NC_028966_p44 hypothetical protein phrog_28426 unknown function unknown function -1 40713 40913
YP_009214854.1 NC_028966_p88 hypothetical protein phrog_30996 unknown function unknown function -1 64096 64224
YP_009214875.1 NC_028966_p109 hypothetical protein phrog_5362 DNA primase DNA, RNA and nucleotide metabolism -1 75298 76269
YP_009214784.1 NC_028966_p18 tape measure protein phrog_5448 tail length tape measure protein tail 1 13557 22286
YP_009214868.1 NC_028966_p102 hypothetical protein phrog_30484 unknown function unknown function -1 71132 71380
YP_009214869.1 NC_028966_p103 hypothetical protein phrog_7062 unknown function unknown function -1 71377 71655
YP_009214824.1 NC_028966_p58 hypothetical protein phrog_9303 unknown function unknown function -1 48439 48744
YP_009214845.1 NC_028966_p79 hypothetical protein phrog_5298 cobalamin biosynthesis protein moron, auxiliary metabolic gene and host takeover -1 57204 59114
YP_009214768.1 NC_028966_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 1474 3477
YP_009214778.1 NC_028966_p12 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 10056 10553
YP_009214855.1 NC_028966_p89 hypothetical protein phrog_6708 unknown function unknown function -1 64663 65586
YP_009214769.1 NC_028966_p3 hypothetical protein phrog_113 portal protein head and packaging 1 3593 5317
YP_009214808.1 NC_028966_p42 hypothetical protein phrog_1673 unknown function unknown function -1 39983 40231
YP_009214872.1 NC_028966_p106 hypothetical protein phrog_8352 unknown function unknown function -1 74103 74234
YP_009214802.1 NC_028966_p36 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 36643 37839
YP_009214807.1 NC_028966_p41 hypothetical protein phrog_8142 unknown function unknown function -1 39727 39972
YP_009214851.1 NC_028966_p85 hypothetical protein phrog_33965 unknown function unknown function -1 62991 63215
YP_009214774.1 NC_028966_p8 major capsid protein phrog_29 major head protein head and packaging 1 7775 8980
YP_009214818.1 NC_028966_p52 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 44170 45591
YP_009214827.1 NC_028966_p61 hypothetical protein phrog_6622 unknown function unknown function -1 49084 49719
YP_009214805.1 NC_028966_p39 hypothetical protein singleton unknown function unknown function -1 38730 38933
YP_009214837.1 NC_028966_p71 hypothetical protein phrog_6646 unknown function unknown function -1 54258 54680
YP_009214822.1 NC_028966_p56 hypothetical protein phrog_6746 unknown function unknown function -1 47776 48105
YP_009214838.1 NC_028966_p72 hypothetical protein phrog_1342 unknown function unknown function -1 54799 55395
YP_009214833.1 NC_028966_p67 hypothetical protein phrog_7963 unknown function unknown function -1 52307 52567
YP_009214814.1 NC_028966_p48 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 41956 43092
YP_009214842.1 NC_028966_p76 hypothetical protein phrog_1581 unknown function unknown function -1 56123 56380
YP_009214866.1 NC_028966_p100 hypothetical protein singleton unknown function unknown function -1 70486 70815
YP_009214830.1 NC_028966_p64 hypothetical protein phrog_6495 unknown function unknown function -1 50486 50731
YP_009214776.1 NC_028966_p10 hypothetical protein phrog_6879 head-tail connector protein connector 1 9265 9549
YP_009214859.1 NC_028966_p93 hypothetical protein phrog_32541 unknown function unknown function -1 66425 66655
YP_009214858.1 NC_028966_p92 hypothetical protein phrog_33867 unknown function unknown function -1 66176 66331
YP_009214819.1 NC_028966_p53 hypothetical protein phrog_8951 unknown function unknown function -1 45662 45943
YP_009214860.1 NC_028966_p94 hypothetical protein phrog_31553 unknown function unknown function -1 66655 67017
YP_009214816.1 NC_028966_p50 DNA binding protein phrog_6401 DNA binding protein DNA, RNA and nucleotide metabolism -1 43719 43904
YP_009214820.1 NC_028966_p54 hypothetical protein phrog_7649 unknown function unknown function -1 45940 46446
YP_009214777.1 NC_028966_p11 hypothetical protein phrog_195 head-tail adaptor connector 1 9556 10068
YP_009214874.1 NC_028966_p108 endonuclease phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 74718 75311
YP_009214843.1 NC_028966_p77 hypothetical protein phrog_13626 unknown function unknown function -1 56380 56607
YP_009214862.1 NC_028966_p96 hypothetical protein singleton unknown function unknown function -1 67535 67780
YP_009214841.1 NC_028966_p75 hypothetical protein singleton unknown function unknown function -1 55859 56113
YP_009214800.1 NC_028966_p34 hypothetical protein phrog_2525 unknown function unknown function 1 35936 36298
YP_009214773.1 NC_028966_p7 hypothetical protein phrog_5455 head decoration head and packaging 1 7315 7761
YP_009214847.1 NC_028966_p81 hypothetical protein phrog_7008 unknown function unknown function -1 60784 61410
YP_009214801.1 NC_028966_p35 hypothetical protein phrog_12343 unknown function unknown function -1 36422 36646
YP_009214840.1 NC_028966_p74 hypothetical protein phrog_33539 unknown function unknown function -1 55689 55862
YP_009214826.1 NC_028966_p60 hypothetical protein singleton unknown function unknown function -1 48932 49087
YP_009214865.1 NC_028966_p99 hypothetical protein phrog_9619 unknown function unknown function -1 70028 70489
YP_009214835.1 NC_028966_p69 hypothetical protein phrog_21323 unknown function unknown function -1 53296 53448
YP_009214793.1 NC_028966_p27 hypothetical protein phrog_565 holin lysis 1 31834 32271
YP_009214811.1 NC_028966_p45 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 40910 41476
YP_009214794.1 NC_028966_p28 hypothetical protein phrog_6901 unknown function unknown function 1 32274 32600
YP_009214806.1 NC_028966_p40 DNA methylase phrog_67 DNA methyltransferase other -1 38911 39630
YP_009214780.1 NC_028966_p14 hypothetical protein phrog_8128 neck protein connector 1 11049 11384
YP_009214848.1 NC_028966_p82 hypothetical protein phrog_17918 unknown function unknown function -1 61419 61619
YP_009214861.1 NC_028966_p95 hypothetical protein phrog_35038 unknown function unknown function -1 67112 67447
YP_009214799.1 NC_028966_p33 hypothetical protein phrog_2344 unknown function unknown function 1 35443 35943
YP_009214863.1 NC_028966_p97 hypothetical protein singleton unknown function unknown function -1 68891 69028
YP_009214809.1 NC_028966_p43 hypothetical protein phrog_3301 pyrophosphatase other -1 40231 40716
YP_009214791.1 NC_028966_p25 hypothetical protein phrog_24602 unknown function unknown function 1 31078 31383
YP_009214852.1 NC_028966_p86 hypothetical protein singleton unknown function unknown function -1 63218 63535
YP_009214770.1 NC_028966_p4 hypothetical protein phrog_32910 unknown function unknown function 1 5304 5729
YP_009214812.1 NC_028966_p46 hypothetical protein singleton unknown function unknown function -1 41437 41601
YP_009214815.1 NC_028966_p49 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 43096 43722
YP_009214856.1 NC_028966_p90 hypothetical protein singleton unknown function unknown function -1 65731 65877
YP_009214849.1 NC_028966_p83 hypothetical protein phrog_7001 unknown function unknown function -1 61628 61984
YP_009214853.1 NC_028966_p87 hypothetical protein phrog_38508 unknown function unknown function -1 63784 64053
YP_009214839.1 NC_028966_p73 hypothetical protein phrog_32099 unknown function unknown function -1 55408 55692
YP_009214775.1 NC_028966_p9 hypothetical protein phrog_7074 head-tail connector protein connector 1 8996 9187
YP_009214803.1 NC_028966_p37 hypothetical protein phrog_6890 endonuclease DNA, RNA and nucleotide metabolism -1 38018 38443
YP_009214857.1 NC_028966_p91 hypothetical protein phrog_33221 unknown function unknown function -1 66035 66163
YP_009214873.1 NC_028966_p107 hypothetical protein phrog_7609 unknown function unknown function -1 74227 74721
YP_009214867.1 NC_028966_p101 hypothetical protein phrog_33219 unknown function unknown function -1 70812 71135
YP_009214786.1 NC_028966_p20 hypothetical protein phrog_1887 tail protein tail 1 24817 26565
YP_009214771.1 NC_028966_p5 hypothetical protein phrog_6679 unknown function unknown function 1 5753 6061
YP_009214781.1 NC_028966_p15 major tail protein phrog_290 minor tail protein tail 1 11388 12410
YP_009214846.1 NC_028966_p80 ATPase family protein phrog_5424 ATPase other -1 59118 60710
YP_009214832.1 NC_028966_p66 hypothetical protein phrog_11430 unknown function unknown function -1 52140 52310
YP_009214831.1 NC_028966_p65 hypothetical protein phrog_29332 unknown function unknown function -1 50745 52022
YP_009214792.1 NC_028966_p26 hypothetical protein phrog_240 head protein head and packaging 1 31383 31748
YP_009214829.1 NC_028966_p63 hypothetical protein phrog_6792 unknown function unknown function -1 49969 50502
YP_009214850.1 NC_028966_p84 hypothetical protein phrog_6032 unknown function unknown function -1 62047 62994
YP_009214864.1 NC_028966_p98 hypothetical protein singleton unknown function unknown function -1 69061 69363
YP_009214789.1 NC_028966_p23 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 29776 30039
YP_009214870.1 NC_028966_p104 primase phrog_5311 helicase DNA, RNA and nucleotide metabolism -1 71652 73904
YP_009214836.1 NC_028966_p70 hypothetical protein phrog_7690 unknown function unknown function -1 53450 53851
YP_009214871.1 NC_028966_p105 hypothetical protein phrog_7096 unknown function unknown function -1 73901 74125
YP_009214782.1 NC_028966_p16 tail assembly protein phrog_3096 tail assembly chaperone tail 1 12602 13449
YP_009214785.1 NC_028966_p19 hypothetical protein phrog_5287 minor tail protein tail 1 22286 24817
YP_009214796.1 NC_028966_p30 hypothetical protein phrog_102 endolysin lysis 1 33224 34084
YP_009214828.1 NC_028966_p62 hypothetical protein singleton unknown function unknown function -1 49716 49976
YP_009214779.1 NC_028966_p13 hypothetical protein phrog_5299 unknown function unknown function 1 10550 11035
YP_009214783.1 NC_028966_p17 tail assembly protein phrog_3096 tail assembly chaperone tail 1 12602 13186
YP_009214813.1 NC_028966_p47 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 41591 41959
YP_009214798.1 NC_028966_p32 holin phrog_2272 unknown function unknown function 1 35000 35455
YP_009214772.1 NC_028966_p6 hypothetical protein phrog_976 head maturation protease head and packaging 1 6076 7281
YP_009214788.1 NC_028966_p22 hypothetical protein phrog_36171 unknown function unknown function 1 28496 29767
YP_009214767.1 NC_028966_p1 small terminase subunit phrog_6902 terminase small subunit head and packaging 1 39 1493
YP_009214821.1 NC_028966_p55 hypothetical protein phrog_5686 unknown function unknown function -1 46616 47659
YP_009214790.1 NC_028966_p24 hypothetical protein phrog_416 minor tail protein tail 1 30041 31081
YP_009214787.1 NC_028966_p21 hypothetical protein phrog_38533 unknown function unknown function 1 26565 28496
YP_009214844.1 NC_028966_p78 hypothetical protein phrog_35199 unknown function unknown function -1 56604 57125
YP_009214825.1 NC_028966_p59 hypothetical protein singleton unknown function unknown function -1 48741 48932
YP_009214834.1 NC_028966_p68 hypothetical protein phrog_5406 unknown function unknown function -1 52620 53315
YP_009214823.1 NC_028966_p57 hypothetical protein phrog_7044 unknown function unknown function -1 48083 48439
YP_009214804.1 NC_028966_p38 hypothetical protein phrog_31056 unknown function unknown function -1 38511 38645