| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028967 |
Definition |
Propionibacterium phage PAC1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus; unclassified Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29605 |
Host Name |
Propionibacterium acnes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
42 |
%GC |
54.04 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009214905.1 | NC_028967_p30 | hypothetical protein | phrog_2304 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 21289 | 21690 |
| YP_009214876.1 | NC_028967_p1 | hypothetical protein | phrog_1897 | terminase small subunit | head and packaging | 1 | 2 | 373 |
| YP_009214880.1 | NC_028967_p5 | head assembly scaffold | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4072 | 4626 |
| YP_009214902.1 | NC_028967_p27 | hypothetical protein | phrog_2548 | unknown function | unknown function | -1 | 19610 | 20176 |
| YP_009214900.1 | NC_028967_p25 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18386 | 19432 |
| YP_009214916.1 | NC_028967_p41 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26681 | 26989 |
| YP_009214911.1 | NC_028967_p36 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24759 | 25118 |
| YP_009214913.1 | NC_028967_p38 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 25424 | 25651 |
| YP_009214906.1 | NC_028967_p31 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21650 | 22006 |
| YP_009214895.1 | NC_028967_p20 | holin | phrog_443 | holin | lysis | 1 | 16375 | 16770 |
| YP_009214892.1 | NC_028967_p17 | minor tail protein | phrog_1958 | minor tail protein | tail | 1 | 14423 | 14662 |
| YP_009214887.1 | NC_028967_p12 | tail assembly chaperone | phrog_4075 | tail assembly chaperone | tail | 1 | 7816 | 8498 |
| YP_009214877.1 | NC_028967_p2 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 373 | 1884 |
| YP_009214881.1 | NC_028967_p6 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4633 | 5580 |
| YP_009214917.1 | NC_028967_p42 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29241 | 29543 |
| YP_009214897.1 | NC_028967_p22 | hypothetical protein | phrog_1729 | unknown function | unknown function | -1 | 17355 | 17753 |
| YP_009214879.1 | NC_028967_p4 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 3213 | 3968 |
| YP_009214888.1 | NC_028967_p13 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8506 | 11388 |
| YP_009214884.1 | NC_028967_p9 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6441 | 6731 |
| YP_009214909.1 | NC_028967_p34 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 23417 | 23821 |
| YP_009214914.1 | NC_028967_p39 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25676 | 26209 |
| YP_009214890.1 | NC_028967_p15 | protease | phrog_110 | minor tail protein | tail | 1 | 12353 | 13510 |
| YP_009214903.1 | NC_028967_p28 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 20173 | 20736 |
| YP_009214896.1 | NC_028967_p21 | hypothetical protein | phrog_2092 | unknown function | unknown function | -1 | 16859 | 17350 |
| YP_009214901.1 | NC_028967_p26 | hypothetical protein | phrog_1923 | unknown function | unknown function | -1 | 19429 | 19572 |
| YP_009214894.1 | NC_028967_p19 | endolysin | phrog_670 | endolysin | lysis | 1 | 15505 | 16362 |
| YP_009214885.1 | NC_028967_p10 | hypothetical protein | phrog_1892 | minor tail protein | tail | 1 | 6815 | 7099 |
| YP_009214899.1 | NC_028967_p24 | hypothetical protein | phrog_1340 | unknown function | unknown function | -1 | 18056 | 18376 |
| YP_009214883.1 | NC_028967_p8 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6087 | 6434 |
| YP_009214893.1 | NC_028967_p18 | minor tail protein | phrog_1806 | collagen like minor tail | tail | 1 | 14666 | 15463 |
| YP_009214891.1 | NC_028967_p16 | minor tail protein | phrog_1910 | lectin | other | 1 | 13530 | 14348 |
| YP_009214915.1 | NC_028967_p40 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26330 | 26641 |
| YP_009214898.1 | NC_028967_p23 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17757 | 18041 |
| YP_009214910.1 | NC_028967_p35 | exonuclease | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23818 | 24759 |
| YP_009214907.1 | NC_028967_p32 | DNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 22006 | 22869 |
| YP_009214904.1 | NC_028967_p29 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20781 | 21452 |
| YP_009214912.1 | NC_028967_p37 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 25224 | 25427 |
| YP_009214882.1 | NC_028967_p7 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5606 | 6085 |
| YP_009214878.1 | NC_028967_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1881 | 3206 |
| YP_009214886.1 | NC_028967_p11 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 7147 | 7788 |
| YP_009214889.1 | NC_028967_p14 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 11404 | 12345 |
| YP_009214908.1 | NC_028967_p33 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22910 | 23377 |