Genomic map of Gordonia phage Gmala1 (NC_028972)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028972
Definition
Gordonia phage Gmala1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordtnkvirus; unclassified Gordtnkvirus.
DB of origin
REFSEQ
Length
75167
Host Name
Gordonia sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
50.79
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009215245.1 NC_028972_p35 hypothetical protein phrog_22918 unknown function unknown function -1 38468 38623
YP_009215273.1 NC_028972_p63 hypothetical protein phrog_24125 unknown function unknown function -1 52414 52740
YP_009215234.1 NC_028972_p24 lysin A phrog_880 endolysin lysis 1 33337 33993
YP_009215280.1 NC_028972_p70 hypothetical protein phrog_22130 unknown function unknown function -1 55423 56289
YP_009215293.1 NC_028972_p83 hypothetical protein phrog_25427 unknown function unknown function -1 66915 67247
YP_009215238.1 NC_028972_p28 DNA methylase phrog_363 DNA methyltransferase other 1 35092 35631
YP_009215278.1 NC_028972_p68 hypothetical protein phrog_23870 unknown function unknown function -1 54587 54967
YP_009215230.1 NC_028972_p20 hypothetical protein phrog_25513 unknown function unknown function 1 30741 31778
YP_009215244.1 NC_028972_p34 hypothetical protein phrog_26139 unknown function unknown function -1 38111 38464
YP_009215277.1 NC_028972_p67 integrase phrog_1 integrase integration and excision -1 53653 54450
YP_009215291.1 NC_028972_p81 von Willebrand factor domain protein phrog_5298 cobalamin biosynthesis protein moron, auxiliary metabolic gene and host takeover -1 61467 64058
YP_009215288.1 NC_028972_p78 hypothetical protein phrog_20135 unknown function unknown function -1 59969 60580
YP_009215253.1 NC_028972_p43 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 41533 42723
YP_009215227.1 NC_028972_p17 hypothetical protein phrog_5287 minor tail protein tail 1 24561 27140
YP_009215261.1 NC_028972_p51 hypothetical protein phrog_2021 unknown function unknown function -1 44695 45000
YP_009215229.1 NC_028972_p19 hypothetical protein phrog_26908 unknown function unknown function 1 28890 30737
YP_009215287.1 NC_028972_p77 methyltransferase phrog_15480 methyltransferase other -1 59220 59972
YP_009215268.1 NC_028972_p58 DUF732-like protein phrog_16415 unknown function unknown function -1 49224 49679
YP_009215264.1 NC_028972_p54 DNA binding protein phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 46817 47074
YP_009215283.1 NC_028972_p73 hypothetical protein phrog_16893 unknown function unknown function -1 57511 57753
YP_009215241.1 NC_028972_p31 holin phrog_726 unknown function unknown function 1 36456 36854
YP_009215266.1 NC_028972_p56 hypothetical protein phrog_16754 unknown function unknown function -1 48631 49002
YP_009215240.1 NC_028972_p30 holin phrog_1298 minor tail protein tail 1 35962 36453
YP_009215239.1 NC_028972_p29 hypothetical protein phrog_10223 DNA methyltransferase other 1 35756 35965
YP_009215265.1 NC_028972_p55 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 47071 48612
YP_009215233.1 NC_028972_p23 hypothetical protein phrog_18568 unknown function unknown function 1 32972 33337
YP_009215256.1 NC_028972_p46 transcription factor WhiB phrog_472 WhiB transcriptional factor transcription regulation -1 43169 43387
YP_009215272.1 NC_028972_p62 hypothetical protein phrog_15020 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 51909 52421
YP_009215215.1 NC_028972_p5 hypothetical protein phrog_976 head maturation protease head and packaging 1 7452 8618
YP_009215218.1 NC_028972_p8 hypothetical protein phrog_15701 unknown function unknown function 1 10333 10611
YP_009215242.1 NC_028972_p32 hypothetical protein phrog_16963 unknown function unknown function 1 36897 37226
YP_009215212.1 NC_028972_p2 TerL phrog_2 terminase large subunit head and packaging 1 2022 5141
YP_009215251.1 NC_028972_p41 hypothetical protein phrog_22537 unknown function unknown function -1 40390 40752
YP_009215254.1 NC_028972_p44 hypothetical protein phrog_26821 unknown function unknown function -1 42755 42916
YP_009215248.1 NC_028972_p38 hypothetical protein phrog_5351 HNH endonuclease DNA, RNA and nucleotide metabolism -1 39422 39748
YP_009215270.1 NC_028972_p60 hypothetical protein phrog_26509 unknown function unknown function -1 50821 51111
YP_009215274.1 NC_028972_p64 hypothetical protein phrog_17617 unknown function unknown function -1 52737 53021
YP_009215232.1 NC_028972_p22 lysin phrog_13480 endolysin lysis 1 32260 32961
YP_009215255.1 NC_028972_p45 hypothetical protein phrog_22017 unknown function unknown function -1 42916 43158
YP_009215220.1 NC_028972_p10 morphogensis protein phrog_26 tail completion or Neck1 protein connector 1 11275 11763
YP_009215224.1 NC_028972_p14 pre-TMP frameshift protein phrog_3096 tail assembly chaperone tail 1 13768 14633
YP_009215223.1 NC_028972_p13 hypothetical protein phrog_290 minor tail protein tail 1 12596 13621
YP_009215262.1 NC_028972_p52 DNA polymerase phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 45002 46138
YP_009215247.1 NC_028972_p37 hypothetical protein phrog_3301 pyrophosphatase other -1 38919 39458
YP_009215217.1 NC_028972_p7 major capsid protein phrog_29 major head protein head and packaging 1 9110 10300
YP_009215297.1 NC_028972_p87 hypothetical protein phrog_26956 unknown function unknown function -1 69495 69677
YP_009215292.1 NC_028972_p82 ATPase phrog_5424 ATPase other -1 64180 66006
YP_009215213.1 NC_028972_p3 DUF935-like protein phrog_113 portal protein head and packaging 1 5276 7147
YP_009215221.1 NC_028972_p11 hypothetical protein phrog_5299 unknown function unknown function 1 11760 12263
YP_009215250.1 NC_028972_p40 hypothetical protein phrog_23689 unknown function unknown function -1 40211 40393
YP_009215260.1 NC_028972_p50 hypothetical protein phrog_20832 unknown function unknown function -1 44543 44695
YP_009215267.1 NC_028972_p57 hypothetical protein phrog_23696 unknown function unknown function -1 48989 49222
YP_009215258.1 NC_028972_p48 RusA-like ribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 43714 44268
YP_009215269.1 NC_028972_p59 hypothetical protein phrog_14234 unknown function unknown function -1 50000 50665
YP_009215298.1 NC_028972_p88 DNA primase phrog_5311 helicase DNA, RNA and nucleotide metabolism -1 71493 73511
YP_009215271.1 NC_028972_p61 hypothetical protein phrog_5686 unknown function unknown function -1 51113 51979
YP_009215282.1 NC_028972_p72 hypothetical protein phrog_5406 unknown function unknown function -1 56801 57511
YP_009215263.1 NC_028972_p53 ribonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 46224 46814
YP_009215296.1 NC_028972_p86 hypothetical protein singleton unknown function unknown function -1 68872 69378
YP_009215211.1 NC_028972_p1 hypothetical protein phrog_16015 terminase small subunit head and packaging 1 390 2021
YP_009215290.1 NC_028972_p80 hypothetical protein phrog_35867 unknown function unknown function -1 61285 61467
YP_009215216.1 NC_028972_p6 hypothetical protein phrog_5455 head decoration head and packaging 1 8633 9097
YP_009215257.1 NC_028972_p47 hypothetical protein phrog_14812 unknown function unknown function -1 43453 43701
YP_009215237.1 NC_028972_p27 holin phrog_565 holin lysis 1 34646 35092
YP_009215284.1 NC_028972_p74 hypothetical protein phrog_289 GTP-binding domain other -1 58096 58542
YP_009215228.1 NC_028972_p18 hypothetical protein phrog_1887 tail protein tail 1 27160 28893
YP_009215299.1 NC_028972_p89 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 73515 74006
YP_009215243.1 NC_028972_p33 lysin B phrog_102 endolysin lysis 1 37223 38008
YP_009215285.1 NC_028972_p75 hypothetical protein phrog_18600 DNA binding protein DNA, RNA and nucleotide metabolism -1 58545 58760
YP_009215295.1 NC_028972_p85 hypothetical protein phrog_24480 unknown function unknown function -1 68676 68852
YP_009215235.1 NC_028972_p25 hypothetical protein phrog_22476 unknown function unknown function 1 33996 34262
YP_009215275.1 NC_028972_p65 hypothetical protein phrog_23729 unknown function unknown function -1 53022 53318
YP_009215276.1 NC_028972_p66 hypothetical protein phrog_12293 unknown function unknown function -1 53311 53652
YP_009215259.1 NC_028972_p49 hypothetical protein phrog_24706 unknown function unknown function -1 44265 44519
YP_009215236.1 NC_028972_p26 hypothetical protein phrog_18341 peptidase other 1 34267 34635
YP_009215279.1 NC_028972_p69 hypothetical protein phrog_27660 unknown function unknown function -1 54964 55293
YP_009215286.1 NC_028972_p76 hypothetical protein phrog_23057 unknown function unknown function -1 58766 59218
YP_009215222.1 NC_028972_p12 hypothetical protein phrog_18688 unknown function unknown function 1 12279 12584
YP_009215226.1 NC_028972_p16 tape measure protein phrog_5448 tail length tape measure protein tail 1 14740 24558
YP_009215289.1 NC_028972_p79 hypothetical protein phrog_24469 unknown function unknown function -1 60717 60908
YP_009215219.1 NC_028972_p9 hypothetical protein phrog_195 head-tail adaptor connector 1 10745 11278
YP_009215281.1 NC_028972_p71 hypothetical protein phrog_23800 unknown function unknown function -1 56292 56675
YP_009215252.1 NC_028972_p42 thymidylate synthase ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 40772 41527
YP_009215294.1 NC_028972_p84 hypothetical protein phrog_15295 unknown function unknown function -1 67394 68287
YP_009215231.1 NC_028972_p21 hypothetical protein phrog_240 head protein head and packaging 1 31800 32183
YP_009215214.1 NC_028972_p4 hypothetical protein phrog_20049 unknown function unknown function 1 7203 7421
YP_009215246.1 NC_028972_p36 hypothetical protein phrog_24187 unknown function unknown function -1 38633 38917
YP_009215225.1 NC_028972_p15 pre-TMP frameshift protein phrog_3096 tail assembly chaperone tail 1 13768 14373
YP_009215249.1 NC_028972_p39 hypothetical protein phrog_7609 unknown function unknown function -1 39949 40218
YP_009215300.1 NC_028972_p90 hypothetical protein phrog_5362 DNA primase DNA, RNA and nucleotide metabolism -1 74035 74793