| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028978 |
Definition |
Mycobacterium phage Murucutumbu, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
60609 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
66.69 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009215524.1 | NC_028978_p20 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 12036 | 15869 |
| YP_009215542.1 | NC_028978_p38 | hypothetical protein | phrog_7081 | unknown function | unknown function | 1 | 31387 | 31785 |
| YP_009215528.1 | NC_028978_p24 | minor tail subunit | phrog_1565 | minor tail protein | tail | 1 | 19434 | 20516 |
| YP_009215593.1 | NC_028978_p89 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 57849 | 58478 |
| YP_009215548.1 | NC_028978_p44 | HTH binding protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36105 | 36386 |
| YP_009215549.1 | NC_028978_p45 | HTH binding protein | phrog_1840 | excisionase | integration and excision | 1 | 36383 | 36649 |
| YP_009215585.1 | NC_028978_p81 | hypothetical protein | phrog_5794 | unknown function | unknown function | 1 | 54127 | 54387 |
| YP_009215535.1 | NC_028978_p31 | holin | phrog_565 | holin | lysis | 1 | 27289 | 27729 |
| YP_009215572.1 | NC_028978_p68 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45130 | 45501 |
| YP_009215543.1 | NC_028978_p39 | hypothetical protein | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31891 | 32745 |
| YP_009215511.1 | NC_028978_p7 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1562 | 2983 |
| YP_009215507.1 | NC_028978_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 452 | 706 |
| YP_009215531.1 | NC_028978_p27 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23275 | 24288 |
| YP_009215559.1 | NC_028978_p55 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40479 | 40757 |
| YP_009215587.1 | NC_028978_p83 | hypothetical protein | phrog_6426 | unknown function | unknown function | 1 | 54575 | 54727 |
| YP_009215590.1 | NC_028978_p86 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 56412 | 56960 |
| YP_009215563.1 | NC_028978_p59 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41776 | 42096 |
| YP_009215589.1 | NC_028978_p85 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 56026 | 56412 |
| YP_009215556.1 | NC_028978_p52 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 39542 | 39712 |
| YP_009215567.1 | NC_028978_p63 | hypothetical protein | phrog_9435 | unknown function | unknown function | 1 | 43386 | 43865 |
| YP_009215575.1 | NC_028978_p71 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 49261 | 49722 |
| YP_009215512.1 | NC_028978_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2995 | 4548 |
| YP_009215558.1 | NC_028978_p54 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 40098 | 40478 |
| YP_009215583.1 | NC_028978_p79 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 52767 | 53657 |
| YP_009215508.1 | NC_028978_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 703 | 930 |
| YP_009215579.1 | NC_028978_p75 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 51352 | 51627 |
| YP_009215598.1 | NC_028978_p94 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 60118 | 60252 |
| YP_009215546.1 | NC_028978_p42 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 34661 | 35542 |
| YP_009215529.1 | NC_028978_p25 | minor tail subunit | phrog_1736 | minor tail protein | tail | 1 | 20523 | 20831 |
| YP_009215515.1 | NC_028978_p11 | scaffold protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7273 | 7815 |
| YP_009215514.1 | NC_028978_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7054 | 7239 |
| YP_009215530.1 | NC_028978_p26 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 20831 | 23263 |
| YP_009215586.1 | NC_028978_p82 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 54402 | 54578 |
| YP_009215547.1 | NC_028978_p43 | HTH binding protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35590 | 35967 |
| YP_009215522.1 | NC_028978_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11191 | 12035 |
| YP_009215561.1 | NC_028978_p57 | DnaQ-like protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40959 | 41513 |
| YP_009215555.1 | NC_028978_p51 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38586 | 39530 |
| YP_009215584.1 | NC_028978_p80 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 53654 | 54130 |
| YP_009215595.1 | NC_028978_p91 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 58828 | 59043 |
| YP_009215523.1 | NC_028978_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11191 | 11625 |
| YP_009215573.1 | NC_028978_p69 | DNA primase/helicase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 45543 | 48161 |
| YP_009215541.1 | NC_028978_p37 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30585 | 31271 |
| YP_009215526.1 | NC_028978_p22 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 17106 | 18872 |
| YP_009215532.1 | NC_028978_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24370 | 24741 |
| YP_009215527.1 | NC_028978_p23 | minor tail subunit | phrog_1697 | minor tail protein | tail | 1 | 18872 | 19348 |
| YP_009215516.1 | NC_028978_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7891 | 8826 |
| YP_009215582.1 | NC_028978_p78 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 52642 | 52770 |
| YP_009215570.1 | NC_028978_p66 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 44280 | 44789 |
| YP_009215537.1 | NC_028978_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28088 | 28339 |
| YP_009215577.1 | NC_028978_p73 | peptidase | phrog_908 | unknown function | unknown function | 1 | 49919 | 51109 |
| YP_009215578.1 | NC_028978_p74 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 51122 | 51355 |
| YP_009215588.1 | NC_028978_p84 | RtcB | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54836 | 56029 |
| YP_009215540.1 | NC_028978_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30155 | 30508 |
| YP_009215521.1 | NC_028978_p17 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10456 | 11067 |
| YP_009215574.1 | NC_028978_p70 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48570 | 49268 |
| YP_009215564.1 | NC_028978_p60 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 42093 | 42257 |
| YP_009215538.1 | NC_028978_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28326 | 29534 |
| YP_009215518.1 | NC_028978_p14 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 9315 | 9671 |
| YP_009215539.1 | NC_028978_p35 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29727 | 30158 |
| YP_009215571.1 | NC_028978_p67 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44888 | 45130 |
| YP_009215576.1 | NC_028978_p72 | hypothetical protein | phrog_6689 | unknown function | unknown function | 1 | 49719 | 49922 |
| YP_009215566.1 | NC_028978_p62 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 43138 | 43332 |
| YP_009215520.1 | NC_028978_p16 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9930 | 10355 |
| YP_009215536.1 | NC_028978_p32 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 27729 | 28091 |
| YP_009215517.1 | NC_028978_p13 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8938 | 9318 |
| YP_009215592.1 | NC_028978_p88 | HTH DNA binding protein | phrog_3665 | unknown function | unknown function | 1 | 57519 | 57680 |
| YP_009215519.1 | NC_028978_p15 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9652 | 9933 |
| YP_009215509.1 | NC_028978_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1155 | 1358 |
| YP_009215569.1 | NC_028978_p65 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 44077 | 44196 |
| YP_009215557.1 | NC_028978_p53 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 39751 | 40101 |
| YP_009215591.1 | NC_028978_p87 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56968 | 57522 |
| YP_009215533.1 | NC_028978_p29 | lysin A | phrog_1519 | endolysin | lysis | 1 | 24760 | 26409 |
| YP_009215580.1 | NC_028978_p76 | SprT | phrog_1006 | unknown function | unknown function | 1 | 51702 | 52163 |
| YP_009215513.1 | NC_028978_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4553 | 7057 |
| YP_009215565.1 | NC_028978_p61 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 42254 | 43141 |
| YP_009215510.1 | NC_028978_p6 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1351 | 1578 |
| YP_009215545.1 | NC_028978_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 33469 | 34557 |
| YP_009215525.1 | NC_028978_p21 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 15969 | 17105 |
| YP_009215551.1 | NC_028978_p47 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 37165 | 37332 |
| YP_009215562.1 | NC_028978_p58 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 41513 | 41779 |
| YP_009215554.1 | NC_028978_p50 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38326 | 38589 |
| YP_009215534.1 | NC_028978_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 26406 | 27278 |
| YP_009215506.1 | NC_028978_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 270 | 455 |
| YP_009215597.1 | NC_028978_p93 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 59843 | 60073 |
| YP_009215596.1 | NC_028978_p92 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 59192 | 59461 |
| YP_009215544.1 | NC_028978_p40 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32809 | 33111 |
| YP_009215553.1 | NC_028978_p49 | HTH binding protein | phrog_2286 | unknown function | unknown function | 1 | 37538 | 38329 |
| YP_009215599.1 | NC_028978_p95 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60249 | 60551 |
| YP_009215568.1 | NC_028978_p64 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 43862 | 44077 |
| YP_009215560.1 | NC_028978_p56 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 40754 | 40948 |
| YP_009215594.1 | NC_028978_p90 | hypothetical protein | phrog_5243 | unknown function | unknown function | 1 | 58510 | 58707 |
| YP_009215581.1 | NC_028978_p77 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 52281 | 52556 |
| YP_009215550.1 | NC_028978_p46 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36651 | 36992 |
| YP_009215505.1 | NC_028978_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 79 | 273 |
| YP_009215552.1 | NC_028978_p48 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 37329 | 37541 |