| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028979 |
Definition |
Mycobacterium phage Cheetobro, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
57253 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
67.96 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009215678.1 | NC_028979_p79 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 50710 | 51192 |
| YP_009215650.1 | NC_028979_p51 | hypothetical protein | phrog_11977 | unknown function | unknown function | 1 | 37084 | 37314 |
| YP_009215609.1 | NC_028979_p10 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3932 | 5518 |
| YP_009215601.1 | NC_028979_p2 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 251 | 481 |
| YP_009215652.1 | NC_028979_p53 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37615 | 37965 |
| YP_009215661.1 | NC_028979_p62 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 40754 | 40918 |
| YP_009215614.1 | NC_028979_p15 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 10244 | 10618 |
| YP_009215637.1 | NC_028979_p38 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31066 | 31392 |
| YP_009215628.1 | NC_028979_p29 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 24593 | 25597 |
| YP_009215629.1 | NC_028979_p30 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25619 | 25996 |
| YP_009215623.1 | NC_028979_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 18630 | 20417 |
| YP_009215682.1 | NC_028979_p83 | hypothetical protein | phrog_16540 | unknown function | unknown function | 1 | 52350 | 52727 |
| YP_009215624.1 | NC_028979_p25 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 20418 | 20936 |
| YP_009215630.1 | NC_028979_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 26027 | 27637 |
| YP_009215651.1 | NC_028979_p52 | endonuclease | phrog_12473 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37311 | 37622 |
| YP_009215621.1 | NC_028979_p22 | tapemeasure protein | phrog_971 | endolysin | lysis | 1 | 13324 | 17496 |
| YP_009215654.1 | NC_028979_p55 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 38208 | 38900 |
| YP_009215602.1 | NC_028979_p3 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 478 | 645 |
| YP_009215646.1 | NC_028979_p47 | CI repressor | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36166 | 36414 |
| YP_009215638.1 | NC_028979_p39 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 31424 | 31723 |
| YP_009215653.1 | NC_028979_p54 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 37965 | 38204 |
| YP_009215674.1 | NC_028979_p75 | recombination endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 48349 | 48849 |
| YP_009215677.1 | NC_028979_p78 | hypothetical protein | phrog_12502 | unknown function | unknown function | 1 | 50507 | 50713 |
| YP_009215681.1 | NC_028979_p82 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 52063 | 52332 |
| YP_009215617.1 | NC_028979_p18 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 11221 | 11646 |
| YP_009215672.1 | NC_028979_p73 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 45111 | 47732 |
| YP_009215656.1 | NC_028979_p57 | hypothetical protein | phrog_14062 | unknown function | unknown function | 1 | 39283 | 39492 |
| YP_009215676.1 | NC_028979_p77 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 49632 | 50510 |
| YP_009215662.1 | NC_028979_p63 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40915 | 41778 |
| YP_009215622.1 | NC_028979_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17497 | 18630 |
| YP_009215685.1 | NC_028979_p86 | hypothetical protein | phrog_11871 | unknown function | unknown function | 1 | 53154 | 53507 |
| YP_009215647.1 | NC_028979_p48 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36411 | 36596 |
| YP_009215683.1 | NC_028979_p84 | hypothetical protein | phrog_7536 | unknown function | unknown function | 1 | 52724 | 52897 |
| YP_009215620.1 | NC_028979_p21 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 12441 | 12890 |
| YP_009215670.1 | NC_028979_p71 | hypothetical protein | phrog_12554 | unknown function | unknown function | 1 | 44479 | 44649 |
| YP_009215684.1 | NC_028979_p85 | hypothetical protein | phrog_12916 | unknown function | unknown function | 1 | 53002 | 53157 |
| YP_009215689.1 | NC_028979_p90 | hypothetical protein | phrog_14339 | unknown function | unknown function | 1 | 56125 | 56337 |
| YP_009215668.1 | NC_028979_p69 | nrdh-like glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43374 | 43637 |
| YP_009215665.1 | NC_028979_p66 | hypothetical protein | phrog_12856 | unknown function | unknown function | 1 | 42133 | 42414 |
| YP_009215687.1 | NC_028979_p88 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 54451 | 55158 |
| YP_009215606.1 | NC_028979_p7 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1998 | 2237 |
| YP_009215613.1 | NC_028979_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 9175 | 10104 |
| YP_009215632.1 | NC_028979_p33 | holin | phrog_565 | holin | lysis | 1 | 28468 | 28866 |
| YP_009215675.1 | NC_028979_p76 | hypothetical protein | phrog_12358 | unknown function | unknown function | 1 | 48846 | 49607 |
| YP_009215643.1 | NC_028979_p44 | integrage | phrog_1 | integrase | integration and excision | 1 | 33528 | 34793 |
| YP_009215657.1 | NC_028979_p58 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 39489 | 39710 |
| YP_009215615.1 | NC_028979_p16 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 10621 | 10977 |
| YP_009215611.1 | NC_028979_p12 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 8255 | 8452 |
| YP_009215669.1 | NC_028979_p70 | DNA-methylase | phrog_67 | DNA methyltransferase | other | 1 | 43634 | 44479 |
| YP_009215655.1 | NC_028979_p56 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 38897 | 39286 |
| YP_009215635.1 | NC_028979_p36 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29442 | 30632 |
| YP_009215626.1 | NC_028979_p27 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 22042 | 22287 |
| YP_009215673.1 | NC_028979_p74 | hypothetical protein | phrog_10480 | unknown function | unknown function | 1 | 47987 | 48361 |
| YP_009215618.1 | NC_028979_p19 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 11727 | 12338 |
| YP_009215691.1 | NC_028979_p92 | methyltransferase | phrog_2675 | DNA methyltransferase | other | 1 | 56646 | 57221 |
| YP_009215666.1 | NC_028979_p67 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 42411 | 42527 |
| YP_009215610.1 | NC_028979_p11 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 5499 | 8258 |
| YP_009215660.1 | NC_028979_p61 | DNA polymerase | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40158 | 40754 |
| YP_009215607.1 | NC_028979_p8 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 2234 | 2506 |
| YP_009215619.1 | NC_028979_p20 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 12441 | 13321 |
| YP_009215680.1 | NC_028979_p81 | hypothetical protein | phrog_14347 | unknown function | unknown function | 1 | 51923 | 52033 |
| YP_009215639.1 | NC_028979_p40 | hypothetical protein | phrog_7217 | unknown function | unknown function | 1 | 31720 | 32022 |
| YP_009215688.1 | NC_028979_p89 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 55247 | 55954 |
| YP_009215636.1 | NC_028979_p37 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 30635 | 30916 |
| YP_009215686.1 | NC_028979_p87 | hypothetical protein | phrog_5436 | unknown function | unknown function | 1 | 53586 | 54386 |
| YP_009215659.1 | NC_028979_p60 | hypothetical protein | phrog_13940 | unknown function | unknown function | 1 | 40078 | 40161 |
| YP_009215642.1 | NC_028979_p43 | hypothetical protein | phrog_806 | unknown function | unknown function | -1 | 32766 | 33290 |
| YP_009215604.1 | NC_028979_p5 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 924 | 1286 |
| YP_009215608.1 | NC_028979_p9 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 2478 | 3920 |
| YP_009215664.1 | NC_028979_p65 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 41918 | 42136 |
| YP_009215627.1 | NC_028979_p28 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 22280 | 24589 |
| YP_009215605.1 | NC_028979_p6 | hypothetical protein | phrog_7999 | unknown function | unknown function | 1 | 1286 | 1972 |
| YP_009215600.1 | NC_028979_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 117 | 254 |
| YP_009215616.1 | NC_028979_p17 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 10964 | 11224 |
| YP_009215633.1 | NC_028979_p34 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28863 | 29198 |
| YP_009215663.1 | NC_028979_p64 | hypothetical protein | phrog_10545 | unknown function | unknown function | 1 | 41778 | 41921 |
| YP_009215631.1 | NC_028979_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27637 | 28428 |
| YP_009215640.1 | NC_028979_p41 | hypothetical protein | phrog_3851 | unknown function | unknown function | 1 | 32015 | 32404 |
| YP_009215671.1 | NC_028979_p72 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44639 | 45019 |
| YP_009215658.1 | NC_028979_p59 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39803 | 40078 |
| YP_009215690.1 | NC_028979_p91 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56341 | 56646 |
| YP_009215641.1 | NC_028979_p42 | hypothetical protein | phrog_8324 | unknown function | unknown function | 1 | 32401 | 32667 |
| YP_009215634.1 | NC_028979_p35 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 29195 | 29455 |
| YP_009215645.1 | NC_028979_p46 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35676 | 36035 |
| YP_009215625.1 | NC_028979_p26 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 20933 | 22030 |
| YP_009215649.1 | NC_028979_p50 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 36905 | 37087 |
| YP_009215603.1 | NC_028979_p4 | hypothetical protein | phrog_5972 | unknown function | unknown function | 1 | 658 | 927 |
| YP_009215667.1 | NC_028979_p68 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42598 | 43266 |
| YP_009215612.1 | NC_028979_p13 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 8544 | 9116 |
| YP_009215648.1 | NC_028979_p49 | hypothetical protein | phrog_14099 | unknown function | unknown function | 1 | 36601 | 36861 |
| YP_009215644.1 | NC_028979_p45 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 34774 | 35592 |
| YP_009215679.1 | NC_028979_p80 | hypothetical protein | phrog_1006 | unknown function | unknown function | 1 | 51228 | 51812 |