| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028980 |
Definition |
Pseudomonas phage PAE1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yuavirus. |
DB of origin |
REFSEQ |
Length |
62181 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
64.23 |
Number of singletons |
3 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009215732.1 | NC_028980_p41 | hypothetical protein | phrog_7790 | unknown function | unknown function | 1 | 34909 | 35592 |
| YP_009215694.1 | NC_028980_p3 | nuclease | phrog_15471 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2265 | 2882 |
| YP_009215755.1 | NC_028980_p64 | hypothetical protein | phrog_2053 | unknown function | unknown function | 1 | 51482 | 51697 |
| YP_009215701.1 | NC_028980_p10 | structural protein | phrog_15312 | virion structural protein | head and packaging | 1 | 8390 | 8962 |
| YP_009215772.1 | NC_028980_p81 | hypothetical protein | phrog_17208 | unknown function | unknown function | 1 | 58959 | 59582 |
| YP_009215735.1 | NC_028980_p44 | pyridoxal-phosphate dependent enzyme | phrog_7093 | threonine dehydratase | other | 1 | 36753 | 37586 |
| YP_009215731.1 | NC_028980_p40 | hypothetical protein | phrog_12275 | unknown function | unknown function | 1 | 34303 | 34809 |
| YP_009215757.1 | NC_028980_p66 | hypothetical protein | phrog_8203 | unknown function | unknown function | 1 | 52213 | 53391 |
| YP_009215766.1 | NC_028980_p75 | hypothetical protein | phrog_17285 | unknown function | unknown function | 1 | 56349 | 56513 |
| YP_009215716.1 | NC_028980_p25 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 19928 | 20929 |
| YP_009215730.1 | NC_028980_p39 | hypothetical protein | phrog_17271 | unknown function | unknown function | 1 | 34155 | 34343 |
| YP_009215761.1 | NC_028980_p70 | hypothetical protein | phrog_7569 | unknown function | unknown function | 1 | 54671 | 55147 |
| YP_009215759.1 | NC_028980_p68 | hypothetical protein | phrog_8938 | unknown function | unknown function | 1 | 53797 | 54066 |
| YP_009215717.1 | NC_028980_p26 | structural protein | phrog_1082 | tail assembly protein | tail | 1 | 20931 | 22601 |
| YP_009215707.1 | NC_028980_p16 | structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 11400 | 11918 |
| YP_009215713.1 | NC_028980_p22 | structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 15100 | 15546 |
| YP_009215748.1 | NC_028980_p57 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 45087 | 47081 |
| YP_009215752.1 | NC_028980_p61 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 48226 | 48552 |
| YP_009215754.1 | NC_028980_p63 | integrase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 49060 | 51471 |
| YP_009215727.1 | NC_028980_p36 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 30140 | 30979 |
| YP_009215708.1 | NC_028980_p17 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 11922 | 12290 |
| YP_009215741.1 | NC_028980_p50 | HNH endonuclease | singleton | unknown function | unknown function | 1 | 41755 | 42129 |
| YP_009215720.1 | NC_028980_p29 | structural protein | phrog_1196 | tail assembly chaperone | tail | 1 | 23654 | 23857 |
| YP_009215775.1 | NC_028980_p84 | hypothetical protein | phrog_21134 | unknown function | unknown function | 1 | 60242 | 60640 |
| YP_009215736.1 | NC_028980_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37558 | 38043 |
| YP_009215702.1 | NC_028980_p11 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 8982 | 9587 |
| YP_009215744.1 | NC_028980_p53 | thymidylate synthase | phrog_5131 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 42827 | 43882 |
| YP_009215715.1 | NC_028980_p24 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 18384 | 19913 |
| YP_009215724.1 | NC_028980_p33 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 27337 | 29031 |
| YP_009215768.1 | NC_028980_p77 | hypothetical protein | phrog_16645 | unknown function | unknown function | 1 | 57136 | 57819 |
| YP_009215712.1 | NC_028980_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14988 | 15116 |
| YP_009215767.1 | NC_028980_p76 | hypothetical protein | phrog_4301 | unknown function | unknown function | 1 | 56636 | 57109 |
| YP_009215700.1 | NC_028980_p9 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 7352 | 8284 |
| YP_009215725.1 | NC_028980_p34 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 29039 | 29392 |
| YP_009215751.1 | NC_028980_p60 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 47843 | 48241 |
| YP_009215703.1 | NC_028980_p12 | hypothetical protein | phrog_8884 | unknown function | unknown function | 1 | 9615 | 9785 |
| YP_009215737.1 | NC_028980_p46 | DNA repair photolyase | phrog_9252 | DNA repair photolyase | DNA, RNA and nucleotide metabolism | 1 | 38113 | 39555 |
| YP_009215773.1 | NC_028980_p82 | hypothetical protein | phrog_10108 | unknown function | unknown function | 1 | 59681 | 60010 |
| YP_009215765.1 | NC_028980_p74 | hypothetical protein | phrog_9190 | unknown function | unknown function | 1 | 56083 | 56352 |
| YP_009215714.1 | NC_028980_p23 | tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 15549 | 18374 |
| YP_009215729.1 | NC_028980_p38 | ribonucleotide reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 32296 | 34158 |
| YP_009215709.1 | NC_028980_p18 | structural protein | phrog_179 | tail terminator | connector | 1 | 12287 | 12739 |
| YP_009215777.1 | NC_028980_p86 | hypothetical protein | phrog_11606 | unknown function | unknown function | 1 | 60987 | 61175 |
| YP_009215779.1 | NC_028980_p88 | hypothetical protein | phrog_7990 | unknown function | unknown function | 1 | 61430 | 61648 |
| YP_009215750.1 | NC_028980_p59 | dCMP deanimase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 47389 | 47850 |
| YP_009215705.1 | NC_028980_p14 | holin | phrog_8226 | holin | lysis | 1 | 10355 | 10690 |
| YP_009215718.1 | NC_028980_p27 | structural protein | phrog_778 | tail assembly protein | tail | 1 | 22598 | 23407 |
| YP_009215721.1 | NC_028980_p30 | structural protein | phrog_1101 | tail protein | tail | 1 | 23841 | 26012 |
| YP_009215753.1 | NC_028980_p62 | endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48554 | 49057 |
| YP_009215738.1 | NC_028980_p47 | triphosphate hydrolase | phrog_800 | terminase small subunit | head and packaging | 1 | 39610 | 40182 |
| YP_009215769.1 | NC_028980_p78 | hypothetical protein | phrog_5016 | unknown function | unknown function | 1 | 57819 | 58100 |
| YP_009215719.1 | NC_028980_p28 | structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 23421 | 23654 |
| YP_009215760.1 | NC_028980_p69 | pyrophosphatase | phrog_9147 | unknown function | unknown function | 1 | 54069 | 54674 |
| YP_009215739.1 | NC_028980_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40536 | 40793 |
| YP_009215740.1 | NC_028980_p49 | hypothetical protein | phrog_2396 | unknown function | unknown function | 1 | 40790 | 41758 |
| YP_009215692.1 | NC_028980_p1 | small terminase | phrog_4044 | terminase small subunit | head and packaging | 1 | 136 | 663 |
| YP_009215698.1 | NC_028980_p7 | structural protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5097 | 6305 |
| YP_009215728.1 | NC_028980_p37 | exonuclease | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 31081 | 32274 |
| YP_009215723.1 | NC_028980_p32 | hypothetical protein | phrog_6420 | unknown function | unknown function | 1 | 26565 | 26909 |
| YP_009215699.1 | NC_028980_p8 | structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6374 | 7156 |
| YP_009215743.1 | NC_028980_p52 | hypothetical protein | phrog_19970 | unknown function | unknown function | 1 | 42717 | 42830 |
| YP_009215733.1 | NC_028980_p42 | hypothetical protein | phrog_4445 | unknown function | unknown function | 1 | 35603 | 35866 |
| YP_009215764.1 | NC_028980_p73 | hypothetical protein | phrog_9341 | unknown function | unknown function | 1 | 55791 | 56078 |
| YP_009215710.1 | NC_028980_p19 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 12773 | 14305 |
| YP_009215770.1 | NC_028980_p79 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 58102 | 58674 |
| YP_009215749.1 | NC_028980_p58 | DNA primase | phrog_8389 | unknown function | unknown function | 1 | 47195 | 47392 |
| YP_009215693.1 | NC_028980_p2 | large terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 663 | 2210 |
| YP_009215704.1 | NC_028980_p13 | Rz lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 9789 | 10358 |
| YP_009215776.1 | NC_028980_p85 | hypothetical protein | phrog_27079 | unknown function | unknown function | 1 | 60637 | 60990 |
| YP_009215771.1 | NC_028980_p80 | RNA polymerase binding protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 58667 | 58858 |
| YP_009215747.1 | NC_028980_p56 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 44701 | 45087 |
| YP_009215706.1 | NC_028980_p15 | endolysin | phrog_669 | endolysin | lysis | 1 | 10675 | 11400 |
| YP_009215758.1 | NC_028980_p67 | hypothetical protein | phrog_9297 | unknown function | unknown function | 1 | 53388 | 53729 |
| YP_009215746.1 | NC_028980_p55 | hypothetical protein | phrog_14034 | unknown function | unknown function | 1 | 44505 | 44732 |
| YP_009215695.1 | NC_028980_p4 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 2869 | 4407 |
| YP_009215778.1 | NC_028980_p87 | hypothetical protein | phrog_6858 | unknown function | unknown function | 1 | 61179 | 61433 |
| YP_009215697.1 | NC_028980_p6 | GIY-YIG endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4523 | 5110 |
| YP_009215726.1 | NC_028980_p35 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 29452 | 29997 |
| YP_009215745.1 | NC_028980_p54 | 5'-deoxynucleotidase | phrog_6047 | unknown function | unknown function | 1 | 43895 | 44530 |
| YP_009215774.1 | NC_028980_p83 | hypothetical protein | phrog_8760 | unknown function | unknown function | 1 | 60033 | 60245 |
| YP_009215756.1 | NC_028980_p65 | hypothetical protein | phrog_14626 | unknown function | unknown function | 1 | 51809 | 52174 |
| YP_009215742.1 | NC_028980_p51 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 42144 | 42704 |
| YP_009215734.1 | NC_028980_p43 | hypothetical protein | phrog_6364 | unknown function | unknown function | 1 | 35876 | 36751 |
| YP_009215696.1 | NC_028980_p5 | hypothetical protein | phrog_9943 | unknown function | unknown function | 1 | 4404 | 4523 |
| YP_009215722.1 | NC_028980_p31 | structural protein | phrog_5363 | unknown function | unknown function | 1 | 26012 | 26497 |
| YP_009215762.1 | NC_028980_p71 | hypothetical protein | phrog_13330 | unknown function | unknown function | 1 | 55144 | 55473 |
| YP_009215711.1 | NC_028980_p20 | tail protein | phrog_313 | Tail assembly chaperone | tail | 1 | 14368 | 14826 |
| YP_009215763.1 | NC_028980_p72 | hypothetical protein | phrog_8020 | unknown function | unknown function | 1 | 55492 | 55788 |