Genomic map of Pseudomonas phage PAE1 (NC_028980)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028980
Definition
Pseudomonas phage PAE1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yuavirus.
DB of origin
REFSEQ
Length
62181
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
88
%GC
64.23
Number of singletons
3
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009215732.1 NC_028980_p41 hypothetical protein phrog_7790 unknown function unknown function 1 34909 35592
YP_009215694.1 NC_028980_p3 nuclease phrog_15471 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2265 2882
YP_009215755.1 NC_028980_p64 hypothetical protein phrog_2053 unknown function unknown function 1 51482 51697
YP_009215701.1 NC_028980_p10 structural protein phrog_15312 virion structural protein head and packaging 1 8390 8962
YP_009215772.1 NC_028980_p81 hypothetical protein phrog_17208 unknown function unknown function 1 58959 59582
YP_009215735.1 NC_028980_p44 pyridoxal-phosphate dependent enzyme phrog_7093 threonine dehydratase other 1 36753 37586
YP_009215731.1 NC_028980_p40 hypothetical protein phrog_12275 unknown function unknown function 1 34303 34809
YP_009215757.1 NC_028980_p66 hypothetical protein phrog_8203 unknown function unknown function 1 52213 53391
YP_009215766.1 NC_028980_p75 hypothetical protein phrog_17285 unknown function unknown function 1 56349 56513
YP_009215716.1 NC_028980_p25 structural protein phrog_687 structural protein head and packaging 1 19928 20929
YP_009215730.1 NC_028980_p39 hypothetical protein phrog_17271 unknown function unknown function 1 34155 34343
YP_009215761.1 NC_028980_p70 hypothetical protein phrog_7569 unknown function unknown function 1 54671 55147
YP_009215759.1 NC_028980_p68 hypothetical protein phrog_8938 unknown function unknown function 1 53797 54066
YP_009215717.1 NC_028980_p26 structural protein phrog_1082 tail assembly protein tail 1 20931 22601
YP_009215707.1 NC_028980_p16 structural protein phrog_477 head-tail adaptor Ad1 connector 1 11400 11918
YP_009215713.1 NC_028980_p22 structural protein phrog_169 tail completion or Neck1 protein connector 1 15100 15546
YP_009215748.1 NC_028980_p57 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 45087 47081
YP_009215752.1 NC_028980_p61 repressor phrog_3 transcriptional repressor transcription regulation 1 48226 48552
YP_009215754.1 NC_028980_p63 integrase phrog_1829 DNA primase DNA, RNA and nucleotide metabolism 1 49060 51471
YP_009215727.1 NC_028980_p36 hypothetical protein phrog_2402 unknown function unknown function 1 30140 30979
YP_009215708.1 NC_028980_p17 structural protein phrog_161 head closure Hc1 connector 1 11922 12290
YP_009215741.1 NC_028980_p50 HNH endonuclease singleton unknown function unknown function 1 41755 42129
YP_009215720.1 NC_028980_p29 structural protein phrog_1196 tail assembly chaperone tail 1 23654 23857
YP_009215775.1 NC_028980_p84 hypothetical protein phrog_21134 unknown function unknown function 1 60242 60640
YP_009215736.1 NC_028980_p45 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37558 38043
YP_009215702.1 NC_028980_p11 hypothetical protein phrog_6213 unknown function unknown function 1 8982 9587
YP_009215744.1 NC_028980_p53 thymidylate synthase phrog_5131 thymidylate synthase DNA, RNA and nucleotide metabolism 1 42827 43882
YP_009215715.1 NC_028980_p24 structural protein phrog_687 structural protein head and packaging 1 18384 19913
YP_009215724.1 NC_028980_p33 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 27337 29031
YP_009215768.1 NC_028980_p77 hypothetical protein phrog_16645 unknown function unknown function 1 57136 57819
YP_009215712.1 NC_028980_p21 hypothetical protein singleton unknown function unknown function 1 14988 15116
YP_009215767.1 NC_028980_p76 hypothetical protein phrog_4301 unknown function unknown function 1 56636 57109
YP_009215700.1 NC_028980_p9 major capsid protein phrog_212 major head protein head and packaging 1 7352 8284
YP_009215725.1 NC_028980_p34 hypothetical protein phrog_5888 unknown function unknown function 1 29039 29392
YP_009215751.1 NC_028980_p60 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism 1 47843 48241
YP_009215703.1 NC_028980_p12 hypothetical protein phrog_8884 unknown function unknown function 1 9615 9785
YP_009215737.1 NC_028980_p46 DNA repair photolyase phrog_9252 DNA repair photolyase DNA, RNA and nucleotide metabolism 1 38113 39555
YP_009215773.1 NC_028980_p82 hypothetical protein phrog_10108 unknown function unknown function 1 59681 60010
YP_009215765.1 NC_028980_p74 hypothetical protein phrog_9190 unknown function unknown function 1 56083 56352
YP_009215714.1 NC_028980_p23 tape measure protein phrog_3336 tail length tape measure protein tail 1 15549 18374
YP_009215729.1 NC_028980_p38 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 32296 34158
YP_009215709.1 NC_028980_p18 structural protein phrog_179 tail terminator connector 1 12287 12739
YP_009215777.1 NC_028980_p86 hypothetical protein phrog_11606 unknown function unknown function 1 60987 61175
YP_009215779.1 NC_028980_p88 hypothetical protein phrog_7990 unknown function unknown function 1 61430 61648
YP_009215750.1 NC_028980_p59 dCMP deanimase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 47389 47850
YP_009215705.1 NC_028980_p14 holin phrog_8226 holin lysis 1 10355 10690
YP_009215718.1 NC_028980_p27 structural protein phrog_778 tail assembly protein tail 1 22598 23407
YP_009215721.1 NC_028980_p30 structural protein phrog_1101 tail protein tail 1 23841 26012
YP_009215753.1 NC_028980_p62 endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 48554 49057
YP_009215738.1 NC_028980_p47 triphosphate hydrolase phrog_800 terminase small subunit head and packaging 1 39610 40182
YP_009215769.1 NC_028980_p78 hypothetical protein phrog_5016 unknown function unknown function 1 57819 58100
YP_009215719.1 NC_028980_p28 structural protein phrog_1180 tail assembly chaperone tail 1 23421 23654
YP_009215760.1 NC_028980_p69 pyrophosphatase phrog_9147 unknown function unknown function 1 54069 54674
YP_009215739.1 NC_028980_p48 hypothetical protein singleton unknown function unknown function 1 40536 40793
YP_009215740.1 NC_028980_p49 hypothetical protein phrog_2396 unknown function unknown function 1 40790 41758
YP_009215692.1 NC_028980_p1 small terminase phrog_4044 terminase small subunit head and packaging 1 136 663
YP_009215698.1 NC_028980_p7 structural protein phrog_241 head morphogenesis head and packaging 1 5097 6305
YP_009215728.1 NC_028980_p37 exonuclease phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 31081 32274
YP_009215723.1 NC_028980_p32 hypothetical protein phrog_6420 unknown function unknown function 1 26565 26909
YP_009215699.1 NC_028980_p8 structural protein phrog_206 head scaffolding protein head and packaging 1 6374 7156
YP_009215743.1 NC_028980_p52 hypothetical protein phrog_19970 unknown function unknown function 1 42717 42830
YP_009215733.1 NC_028980_p42 hypothetical protein phrog_4445 unknown function unknown function 1 35603 35866
YP_009215764.1 NC_028980_p73 hypothetical protein phrog_9341 unknown function unknown function 1 55791 56078
YP_009215710.1 NC_028980_p19 major tail protein phrog_290 minor tail protein tail 1 12773 14305
YP_009215770.1 NC_028980_p79 exonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 58102 58674
YP_009215749.1 NC_028980_p58 DNA primase phrog_8389 unknown function unknown function 1 47195 47392
YP_009215693.1 NC_028980_p2 large terminase phrog_2 terminase large subunit head and packaging 1 663 2210
YP_009215704.1 NC_028980_p13 Rz lysis protein phrog_1327 Rz-like spanin lysis 1 9789 10358
YP_009215776.1 NC_028980_p85 hypothetical protein phrog_27079 unknown function unknown function 1 60637 60990
YP_009215771.1 NC_028980_p80 RNA polymerase binding protein phrog_54 DksA-like zinc-finger protein other 1 58667 58858
YP_009215747.1 NC_028980_p56 hypothetical protein phrog_5839 unknown function unknown function 1 44701 45087
YP_009215706.1 NC_028980_p15 endolysin phrog_669 endolysin lysis 1 10675 11400
YP_009215758.1 NC_028980_p67 hypothetical protein phrog_9297 unknown function unknown function 1 53388 53729
YP_009215746.1 NC_028980_p55 hypothetical protein phrog_14034 unknown function unknown function 1 44505 44732
YP_009215695.1 NC_028980_p4 structural protein phrog_145 portal protein head and packaging 1 2869 4407
YP_009215778.1 NC_028980_p87 hypothetical protein phrog_6858 unknown function unknown function 1 61179 61433
YP_009215697.1 NC_028980_p6 GIY-YIG endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 4523 5110
YP_009215726.1 NC_028980_p35 hypothetical protein phrog_2378 unknown function unknown function 1 29452 29997
YP_009215745.1 NC_028980_p54 5'-deoxynucleotidase phrog_6047 unknown function unknown function 1 43895 44530
YP_009215774.1 NC_028980_p83 hypothetical protein phrog_8760 unknown function unknown function 1 60033 60245
YP_009215756.1 NC_028980_p65 hypothetical protein phrog_14626 unknown function unknown function 1 51809 52174
YP_009215742.1 NC_028980_p51 hypothetical protein phrog_1965 unknown function unknown function 1 42144 42704
YP_009215734.1 NC_028980_p43 hypothetical protein phrog_6364 unknown function unknown function 1 35876 36751
YP_009215696.1 NC_028980_p5 hypothetical protein phrog_9943 unknown function unknown function 1 4404 4523
YP_009215722.1 NC_028980_p31 structural protein phrog_5363 unknown function unknown function 1 26012 26497
YP_009215762.1 NC_028980_p71 hypothetical protein phrog_13330 unknown function unknown function 1 55144 55473
YP_009215711.1 NC_028980_p20 tail protein phrog_313 Tail assembly chaperone tail 1 14368 14826
YP_009215763.1 NC_028980_p72 hypothetical protein phrog_8020 unknown function unknown function 1 55492 55788