Genomic map of Clostridium phage phiCDHM19 (NC_028996)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028996
Definition
Clostridium phage phiCDHM19, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
REFSEQ
Length
54295
Host Name
Clostridium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
88
%GC
28.24
Number of singletons
3
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009216868.1 NC_028996_p18 hypothetical protein phrog_2722 unknown function unknown function 1 12014 12160
YP_009216872.1 NC_028996_p22 hypothetical protein phrog_13038 unknown function unknown function 1 16565 16756
YP_009216917.1 NC_028996_p67 resolvase protein phrog_3253 unknown function unknown function 1 42845 43018
YP_009216861.1 NC_028996_p11 head connector protein phrog_132 head-tail adaptor connector 1 8392 8742
YP_009216879.1 NC_028996_p29 baseplate-J protein phrog_6 baseplate wedge subunit tail 1 20501 21553
YP_009216896.1 NC_028996_p46 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 33503 33886
YP_009216875.1 NC_028996_p25 hypothetical protein phrog_1664 unknown function unknown function 1 17717 17959
YP_009216912.1 NC_028996_p62 hypothetical protein phrog_4222 unknown function unknown function 1 40170 40364
YP_009216915.1 NC_028996_p65 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 41287 41895
YP_009216935.1 NC_028996_p85 hypothetical protein phrog_4010 unknown function unknown function 1 52087 52275
YP_009216938.1 NC_028996_p88 hypothetical protein phrog_7312 unknown function unknown function 1 53670 54230
YP_009216893.1 NC_028996_p43 puative Nudix hydrolase protein phrog_6174 unknown function unknown function -1 29600 31186
YP_009216891.1 NC_028996_p41 hypothetical protein phrog_5384 unknown function unknown function 1 28490 28852
YP_009216876.1 NC_028996_p26 cell wall hydrolase protein phrog_400 tail protein tail 1 18218 19738
YP_009216900.1 NC_028996_p50 repressor protein phrog_8 transcriptional regulator transcription regulation -1 36469 36864
YP_009216855.1 NC_028996_p5 hypothetical protein phrog_4502 unknown function unknown function 1 5333 5962
YP_009216920.1 NC_028996_p70 regulatory protein phrog_1310 unknown function unknown function 1 44034 44420
YP_009216919.1 NC_028996_p69 hypothetical protein phrog_7118 unknown function unknown function 1 43478 44041
YP_009216878.1 NC_028996_p28 conserved hypothetical protein (XkdS-like) phrog_120 baseplate wedge subunit tail 1 20080 20508
YP_009216905.1 NC_028996_p55 regulatory protein phrog_130 anti-repressor Ant transcription regulation 1 38054 38809
YP_009216926.1 NC_028996_p76 hypothetical protein phrog_6412 unknown function unknown function 1 47328 47654
YP_009216869.1 NC_028996_p19 tail tape measure protein (partial) singleton unknown function unknown function 1 12164 12428
YP_009216925.1 NC_028996_p75 37kD nucleoid associated protein phrog_1974 unknown function unknown function 1 46349 47353
YP_009216885.1 NC_028996_p35 hypothetical protein phrog_4184 unknown function unknown function 1 25407 26171
YP_009216916.1 NC_028996_p66 DnaD protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 41896 42786
YP_009216936.1 NC_028996_p86 hypothetical protein phrog_2211 unknown function unknown function -1 52255 52572
YP_009216932.1 NC_028996_p82 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 49990 50478
YP_009216880.1 NC_028996_p30 hypothetical protein phrog_521 tail protein tail 1 21553 22161
YP_009216874.1 NC_028996_p24 cell wall hydrolase/LysM protein phrog_1664 unknown function unknown function 1 17415 17696
YP_009216886.1 NC_028996_p36 hypothetical protein singleton unknown function unknown function 1 26211 26666
YP_009216851.1 NC_028996_p1 terminase small subunit protein phrog_309 terminase small subunit head and packaging 1 1 456
YP_009216883.1 NC_028996_p33 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 24898 25191
YP_009216907.1 NC_028996_p57 hypothetical protein phrog_12144 unknown function unknown function 1 39088 39285
YP_009216884.1 NC_028996_p34 hypothetical protein phrog_1243 unknown function unknown function 1 25191 25373
YP_009216921.1 NC_028996_p71 hypothetical protein phrog_2961 unknown function unknown function 1 44420 44554
YP_009216933.1 NC_028996_p83 hypothetical protein phrog_3291 unknown function unknown function 1 51205 51399
YP_009216897.1 NC_028996_p47 puative integrase protein phrog_1 integrase integration and excision -1 34243 35361
YP_009216928.1 NC_028996_p78 regulatory protein phrog_8 transcriptional regulator transcription regulation 1 47838 48191
YP_009216889.1 NC_028996_p39 holin protein phrog_199 holin lysis 1 27166 27597
YP_009216856.1 NC_028996_p6 hypothetical protein phrog_4166 unknown function unknown function 1 5984 6178
YP_009216924.1 NC_028996_p74 hypothetical protein phrog_2462 unknown function unknown function 1 46131 46352
YP_009216899.1 NC_028996_p49 hypothetical protein phrog_18610 unknown function unknown function 1 36335 36472
YP_009216894.1 NC_028996_p44 hypothetical protein phrog_87 metallo-protease other -1 31162 31683
YP_009216865.1 NC_028996_p15 tail sheath protein phrog_1480 tail sheath tail 1 9969 11039
YP_009216862.1 NC_028996_p12 hypothetical protein phrog_615 head-tail adaptor connector 1 8744 9094
YP_009216871.1 NC_028996_p21 tail tape measure protein (partial) phrog_888 unknown function unknown function 1 15068 15820
YP_009216854.1 NC_028996_p4 head protein phrog_115 minor head protein head and packaging 1 4225 5265
YP_009216867.1 NC_028996_p17 conserved hypothetical protein (XkdN-like) phrog_389 tail protein XkdN-like tail 1 11517 11987
YP_009216873.1 NC_028996_p23 hypothetical protein phrog_380 endolysin lysis 1 16780 17409
YP_009216892.1 NC_028996_p42 hypothetical protein phrog_5951 unknown function unknown function 1 29018 29536
YP_009216863.1 NC_028996_p13 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 9095 9505
YP_009216918.1 NC_028996_p68 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 43034 43450
YP_009216895.1 NC_028996_p45 hypothetical protein phrog_2569 unknown function unknown function -1 32385 32573
YP_009216903.1 NC_028996_p53 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 37449 37760
YP_009216853.1 NC_028996_p3 portal protein phrog_64 portal protein head and packaging 1 2857 4212
YP_009216931.1 NC_028996_p81 anti-repressor protein phrog_373 anti-repressor transcription regulation 1 49171 49896
YP_009216898.1 NC_028996_p48 hypothetical protein phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover -1 35420 35821
YP_009216890.1 NC_028996_p40 endolysin protein phrog_435 endolysin lysis 1 27597 28409
YP_009216922.1 NC_028996_p72 hypothetical protein phrog_8001 unknown function unknown function 1 44556 44873
YP_009216858.1 NC_028996_p8 scaffold protein phrog_194 head scaffolding protein head and packaging 1 6571 7167
YP_009216887.1 NC_028996_p37 hypothetical protein phrog_3834 unknown function unknown function 1 26666 26965
YP_009216908.1 NC_028996_p58 hypothetical protein phrog_12952 unknown function unknown function -1 39272 39472
YP_009216934.1 NC_028996_p84 hypothetical protein phrog_1758 acetyltransferase other 1 51399 52010
YP_009216877.1 NC_028996_p27 hypothetical protein phrog_579 unknown function unknown function 1 19754 20080
YP_009216906.1 NC_028996_p56 hypothetical protein phrog_9579 unknown function unknown function 1 38893 39087
YP_009216927.1 NC_028996_p77 hypothetical protein phrog_2994 unknown function unknown function 1 47674 47841
YP_009216929.1 NC_028996_p79 peptide chain release factor protein phrog_4279 unknown function unknown function 1 48285 48623
YP_009216902.1 NC_028996_p52 hypothetical protein singleton unknown function unknown function 1 37255 37380
YP_009216881.1 NC_028996_p31 tail fiber protein phrog_1162 tail fiber protein tail 1 22169 23179
YP_009216882.1 NC_028996_p32 hypothetical protein phrog_1589 unknown function unknown function 1 23196 24884
YP_009216864.1 NC_028996_p14 hypothetical protein phrog_525 unknown function unknown function 1 9516 9968
YP_009216904.1 NC_028996_p54 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 37848 38051
YP_009216870.1 NC_028996_p20 tail tape measure protein (partial) phrog_1272 tail length tape measure protein tail 1 12769 14997
YP_009216852.1 NC_028996_p2 terminase large subunit protein phrog_30251 terminase large subunit head and packaging 1 443 2842
YP_009216913.1 NC_028996_p63 hypothetical protein phrog_2219 unknown function unknown function 1 40367 40684
YP_009216937.1 NC_028996_p87 hypothetical protein phrog_11123 unknown function unknown function 1 52678 53532
YP_009216914.1 NC_028996_p64 conserved hypothetical protein (Gp157-like) phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 40768 41277
YP_009216930.1 NC_028996_p80 endonuclease protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 48749 49156
YP_009216857.1 NC_028996_p7 hypothetical protein phrog_6321 unknown function unknown function 1 6220 6450
YP_009216923.1 NC_028996_p73 DNA methylase protein phrog_116 DNA methyltransferase other 1 44981 46054
YP_009216901.1 NC_028996_p51 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 37017 37250
YP_009216859.1 NC_028996_p9 capsid protein phrog_422 major head protein head and packaging 1 7191 8129
YP_009216909.1 NC_028996_p59 putatve repressor protein phrog_3 transcriptional repressor transcription regulation 1 39525 39722
YP_009216866.1 NC_028996_p16 tail core protein phrog_365 tail protein tail 1 11054 11485
YP_009216911.1 NC_028996_p61 hypothetical protein phrog_11749 unknown function unknown function 1 40069 40173
YP_009216888.1 NC_028996_p38 conserved hypothetical protein (XkdK-like) phrog_134 unknown function unknown function 1 26967 27104
YP_009216910.1 NC_028996_p60 repressor protein phrog_4370 excisionase integration and excision 1 39739 40068
YP_009216860.1 NC_028996_p10 Rho-like termination factor protein phrog_2724 unknown function unknown function 1 8142 8363