| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028996 |
Definition |
Clostridium phage phiCDHM19, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
REFSEQ |
Length |
54295 |
Host Name |
Clostridium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
28.24 |
Number of singletons |
3 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009216868.1 | NC_028996_p18 | hypothetical protein | phrog_2722 | unknown function | unknown function | 1 | 12014 | 12160 |
| YP_009216872.1 | NC_028996_p22 | hypothetical protein | phrog_13038 | unknown function | unknown function | 1 | 16565 | 16756 |
| YP_009216917.1 | NC_028996_p67 | resolvase protein | phrog_3253 | unknown function | unknown function | 1 | 42845 | 43018 |
| YP_009216861.1 | NC_028996_p11 | head connector protein | phrog_132 | head-tail adaptor | connector | 1 | 8392 | 8742 |
| YP_009216879.1 | NC_028996_p29 | baseplate-J protein | phrog_6 | baseplate wedge subunit | tail | 1 | 20501 | 21553 |
| YP_009216896.1 | NC_028996_p46 | regulatory protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 33503 | 33886 |
| YP_009216875.1 | NC_028996_p25 | hypothetical protein | phrog_1664 | unknown function | unknown function | 1 | 17717 | 17959 |
| YP_009216912.1 | NC_028996_p62 | hypothetical protein | phrog_4222 | unknown function | unknown function | 1 | 40170 | 40364 |
| YP_009216915.1 | NC_028996_p65 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41287 | 41895 |
| YP_009216935.1 | NC_028996_p85 | hypothetical protein | phrog_4010 | unknown function | unknown function | 1 | 52087 | 52275 |
| YP_009216938.1 | NC_028996_p88 | hypothetical protein | phrog_7312 | unknown function | unknown function | 1 | 53670 | 54230 |
| YP_009216893.1 | NC_028996_p43 | puative Nudix hydrolase protein | phrog_6174 | unknown function | unknown function | -1 | 29600 | 31186 |
| YP_009216891.1 | NC_028996_p41 | hypothetical protein | phrog_5384 | unknown function | unknown function | 1 | 28490 | 28852 |
| YP_009216876.1 | NC_028996_p26 | cell wall hydrolase protein | phrog_400 | tail protein | tail | 1 | 18218 | 19738 |
| YP_009216900.1 | NC_028996_p50 | repressor protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 36469 | 36864 |
| YP_009216855.1 | NC_028996_p5 | hypothetical protein | phrog_4502 | unknown function | unknown function | 1 | 5333 | 5962 |
| YP_009216920.1 | NC_028996_p70 | regulatory protein | phrog_1310 | unknown function | unknown function | 1 | 44034 | 44420 |
| YP_009216919.1 | NC_028996_p69 | hypothetical protein | phrog_7118 | unknown function | unknown function | 1 | 43478 | 44041 |
| YP_009216878.1 | NC_028996_p28 | conserved hypothetical protein (XkdS-like) | phrog_120 | baseplate wedge subunit | tail | 1 | 20080 | 20508 |
| YP_009216905.1 | NC_028996_p55 | regulatory protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 38054 | 38809 |
| YP_009216926.1 | NC_028996_p76 | hypothetical protein | phrog_6412 | unknown function | unknown function | 1 | 47328 | 47654 |
| YP_009216869.1 | NC_028996_p19 | tail tape measure protein (partial) | singleton | unknown function | unknown function | 1 | 12164 | 12428 |
| YP_009216925.1 | NC_028996_p75 | 37kD nucleoid associated protein | phrog_1974 | unknown function | unknown function | 1 | 46349 | 47353 |
| YP_009216885.1 | NC_028996_p35 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 25407 | 26171 |
| YP_009216916.1 | NC_028996_p66 | DnaD protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 41896 | 42786 |
| YP_009216936.1 | NC_028996_p86 | hypothetical protein | phrog_2211 | unknown function | unknown function | -1 | 52255 | 52572 |
| YP_009216932.1 | NC_028996_p82 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 49990 | 50478 |
| YP_009216880.1 | NC_028996_p30 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 21553 | 22161 |
| YP_009216874.1 | NC_028996_p24 | cell wall hydrolase/LysM protein | phrog_1664 | unknown function | unknown function | 1 | 17415 | 17696 |
| YP_009216886.1 | NC_028996_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26211 | 26666 |
| YP_009216851.1 | NC_028996_p1 | terminase small subunit protein | phrog_309 | terminase small subunit | head and packaging | 1 | 1 | 456 |
| YP_009216883.1 | NC_028996_p33 | hypothetical protein | phrog_1626 | rhodanese-related sulfurtransferase | other | 1 | 24898 | 25191 |
| YP_009216907.1 | NC_028996_p57 | hypothetical protein | phrog_12144 | unknown function | unknown function | 1 | 39088 | 39285 |
| YP_009216884.1 | NC_028996_p34 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 25191 | 25373 |
| YP_009216921.1 | NC_028996_p71 | hypothetical protein | phrog_2961 | unknown function | unknown function | 1 | 44420 | 44554 |
| YP_009216933.1 | NC_028996_p83 | hypothetical protein | phrog_3291 | unknown function | unknown function | 1 | 51205 | 51399 |
| YP_009216897.1 | NC_028996_p47 | puative integrase protein | phrog_1 | integrase | integration and excision | -1 | 34243 | 35361 |
| YP_009216928.1 | NC_028996_p78 | regulatory protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 47838 | 48191 |
| YP_009216889.1 | NC_028996_p39 | holin protein | phrog_199 | holin | lysis | 1 | 27166 | 27597 |
| YP_009216856.1 | NC_028996_p6 | hypothetical protein | phrog_4166 | unknown function | unknown function | 1 | 5984 | 6178 |
| YP_009216924.1 | NC_028996_p74 | hypothetical protein | phrog_2462 | unknown function | unknown function | 1 | 46131 | 46352 |
| YP_009216899.1 | NC_028996_p49 | hypothetical protein | phrog_18610 | unknown function | unknown function | 1 | 36335 | 36472 |
| YP_009216894.1 | NC_028996_p44 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 31162 | 31683 |
| YP_009216865.1 | NC_028996_p15 | tail sheath protein | phrog_1480 | tail sheath | tail | 1 | 9969 | 11039 |
| YP_009216862.1 | NC_028996_p12 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 8744 | 9094 |
| YP_009216871.1 | NC_028996_p21 | tail tape measure protein (partial) | phrog_888 | unknown function | unknown function | 1 | 15068 | 15820 |
| YP_009216854.1 | NC_028996_p4 | head protein | phrog_115 | minor head protein | head and packaging | 1 | 4225 | 5265 |
| YP_009216867.1 | NC_028996_p17 | conserved hypothetical protein (XkdN-like) | phrog_389 | tail protein XkdN-like | tail | 1 | 11517 | 11987 |
| YP_009216873.1 | NC_028996_p23 | hypothetical protein | phrog_380 | endolysin | lysis | 1 | 16780 | 17409 |
| YP_009216892.1 | NC_028996_p42 | hypothetical protein | phrog_5951 | unknown function | unknown function | 1 | 29018 | 29536 |
| YP_009216863.1 | NC_028996_p13 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 9095 | 9505 |
| YP_009216918.1 | NC_028996_p68 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 43034 | 43450 |
| YP_009216895.1 | NC_028996_p45 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 32385 | 32573 |
| YP_009216903.1 | NC_028996_p53 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | -1 | 37449 | 37760 |
| YP_009216853.1 | NC_028996_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2857 | 4212 |
| YP_009216931.1 | NC_028996_p81 | anti-repressor protein | phrog_373 | anti-repressor | transcription regulation | 1 | 49171 | 49896 |
| YP_009216898.1 | NC_028996_p48 | hypothetical protein | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 35420 | 35821 |
| YP_009216890.1 | NC_028996_p40 | endolysin protein | phrog_435 | endolysin | lysis | 1 | 27597 | 28409 |
| YP_009216922.1 | NC_028996_p72 | hypothetical protein | phrog_8001 | unknown function | unknown function | 1 | 44556 | 44873 |
| YP_009216858.1 | NC_028996_p8 | scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 6571 | 7167 |
| YP_009216887.1 | NC_028996_p37 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 26666 | 26965 |
| YP_009216908.1 | NC_028996_p58 | hypothetical protein | phrog_12952 | unknown function | unknown function | -1 | 39272 | 39472 |
| YP_009216934.1 | NC_028996_p84 | hypothetical protein | phrog_1758 | acetyltransferase | other | 1 | 51399 | 52010 |
| YP_009216877.1 | NC_028996_p27 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 19754 | 20080 |
| YP_009216906.1 | NC_028996_p56 | hypothetical protein | phrog_9579 | unknown function | unknown function | 1 | 38893 | 39087 |
| YP_009216927.1 | NC_028996_p77 | hypothetical protein | phrog_2994 | unknown function | unknown function | 1 | 47674 | 47841 |
| YP_009216929.1 | NC_028996_p79 | peptide chain release factor protein | phrog_4279 | unknown function | unknown function | 1 | 48285 | 48623 |
| YP_009216902.1 | NC_028996_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37255 | 37380 |
| YP_009216881.1 | NC_028996_p31 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 22169 | 23179 |
| YP_009216882.1 | NC_028996_p32 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 23196 | 24884 |
| YP_009216864.1 | NC_028996_p14 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 9516 | 9968 |
| YP_009216904.1 | NC_028996_p54 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 37848 | 38051 |
| YP_009216870.1 | NC_028996_p20 | tail tape measure protein (partial) | phrog_1272 | tail length tape measure protein | tail | 1 | 12769 | 14997 |
| YP_009216852.1 | NC_028996_p2 | terminase large subunit protein | phrog_30251 | terminase large subunit | head and packaging | 1 | 443 | 2842 |
| YP_009216913.1 | NC_028996_p63 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 40367 | 40684 |
| YP_009216937.1 | NC_028996_p87 | hypothetical protein | phrog_11123 | unknown function | unknown function | 1 | 52678 | 53532 |
| YP_009216914.1 | NC_028996_p64 | conserved hypothetical protein (Gp157-like) | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 40768 | 41277 |
| YP_009216930.1 | NC_028996_p80 | endonuclease protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48749 | 49156 |
| YP_009216857.1 | NC_028996_p7 | hypothetical protein | phrog_6321 | unknown function | unknown function | 1 | 6220 | 6450 |
| YP_009216923.1 | NC_028996_p73 | DNA methylase protein | phrog_116 | DNA methyltransferase | other | 1 | 44981 | 46054 |
| YP_009216901.1 | NC_028996_p51 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 37017 | 37250 |
| YP_009216859.1 | NC_028996_p9 | capsid protein | phrog_422 | major head protein | head and packaging | 1 | 7191 | 8129 |
| YP_009216909.1 | NC_028996_p59 | putatve repressor protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 39525 | 39722 |
| YP_009216866.1 | NC_028996_p16 | tail core protein | phrog_365 | tail protein | tail | 1 | 11054 | 11485 |
| YP_009216911.1 | NC_028996_p61 | hypothetical protein | phrog_11749 | unknown function | unknown function | 1 | 40069 | 40173 |
| YP_009216888.1 | NC_028996_p38 | conserved hypothetical protein (XkdK-like) | phrog_134 | unknown function | unknown function | 1 | 26967 | 27104 |
| YP_009216910.1 | NC_028996_p60 | repressor protein | phrog_4370 | excisionase | integration and excision | 1 | 39739 | 40068 |
| YP_009216860.1 | NC_028996_p10 | Rho-like termination factor protein | phrog_2724 | unknown function | unknown function | 1 | 8142 | 8363 |