Genomic map of Clostridium phage phiCDHM11 (NC_029001)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029001
Definition
Clostridium phage phiCDHM11 complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
32000
Host Name
Clostridium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
29.25
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009217646.1 NC_029001_p11 conserved hypothetical protein (XkdN-like) phrog_4976 tail assembly chaperone tail 1 7891 8274
YP_009217678.1 NC_029001_p43 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 29110 29514
YP_009217682.1 NC_029001_p47 hypothetical protein phrog_5164 unknown function unknown function 1 30116 30376
YP_009217643.1 NC_029001_p8 hypothetical protein phrog_525 unknown function unknown function 1 5881 6297
YP_009217665.1 NC_029001_p30 hypothetical protein singleton unknown function unknown function 1 20507 20632
YP_009217659.1 NC_029001_p24 holin protein phrog_1129 holin lysis 1 17581 17838
YP_009217674.1 NC_029001_p39 hypothetical protein phrog_6407 unknown function unknown function 1 27826 28008
YP_009217638.1 NC_029001_p3 Clp protease protein phrog_94 head maturation protease head and packaging 1 2826 3563
YP_009217636.1 NC_029001_p1 terminase large subunit protein phrog_9 terminase large subunit head and packaging 1 1 1650
YP_009217656.1 NC_029001_p21 hypothetical protein phrog_1589 unknown function unknown function 1 15835 17115
YP_009217653.1 NC_029001_p18 baseplate-J protein phrog_6 baseplate wedge subunit tail 1 13373 14425
YP_009217658.1 NC_029001_p23 hypothetical protein phrog_1193 hemolysin other 1 17334 17564
YP_009217679.1 NC_029001_p44 hypothetical protein phrog_3794 unknown function unknown function 1 29572 29718
YP_009217654.1 NC_029001_p19 hypothetical protein phrog_521 tail protein tail 1 14422 15039
YP_009217661.1 NC_029001_p26 hypothetical protein phrog_2655 excisionase integration and excision -1 18677 18886
YP_009217667.1 NC_029001_p32 hypothetical protein phrog_4741 unknown function unknown function -1 21417 21749
YP_009217644.1 NC_029001_p9 tail sheath protein phrog_1480 tail sheath tail 1 6314 7381
YP_009217657.1 NC_029001_p22 hypothetical protein phrog_1243 unknown function unknown function 1 17115 17297
YP_009217683.1 NC_029001_p48 hypothetical protein singleton unknown function unknown function 1 30622 30739
YP_009217662.1 NC_029001_p27 hypothetical protein phrog_18831 unknown function unknown function 1 19036 19485
YP_009217640.1 NC_029001_p5 head tail joining protein phrog_40 head-tail adaptor Ad1 connector 1 4834 5121
YP_009217675.1 NC_029001_p40 hypothetical protein phrog_4206 unknown function unknown function 1 28074 28508
YP_009217670.1 NC_029001_p35 exonuclease protein phrog_5173 unknown function unknown function 1 24289 25638
YP_009217676.1 NC_029001_p41 hypothetical protein phrog_2065 unknown function unknown function 1 28606 28767
YP_009217639.1 NC_029001_p4 capsid protein phrog_10 major head protein head and packaging 1 3556 4824
YP_009217663.1 NC_029001_p28 regulatory protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19497 20132
YP_009217652.1 NC_029001_p17 conserved hypothetical protein (XkdS-like) phrog_120 baseplate wedge subunit tail 1 12952 13380
YP_009217641.1 NC_029001_p6 head connector protein phrog_25 head closure Hc1 connector 1 5125 5463
YP_009217680.1 NC_029001_p45 hypothetical protein phrog_36952 unknown function unknown function 1 29715 29789
YP_009217671.1 NC_029001_p36 typeIII restriction enzyme protein phrog_24673 restriction enzyme III DNA, RNA and nucleotide metabolism 1 25737 26441
YP_009217666.1 NC_029001_p31 hypothetical protein phrog_4021 unknown function unknown function -1 20992 21273
YP_009217684.1 NC_029001_p49 hypothetical protein singleton unknown function unknown function 1 31889 32000
YP_009217655.1 NC_029001_p20 tail fiber protein phrog_2137 tail fiber protein tail 1 15040 15819
YP_009217650.1 NC_029001_p15 cell wall hydrolase protein phrog_400 tail protein tail 1 11063 12610
YP_009217637.1 NC_029001_p2 portal protein phrog_12 portal protein head and packaging 1 1666 2820
YP_009217668.1 NC_029001_p33 ParA protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 21750 22568
YP_009217642.1 NC_029001_p7 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 5456 5869
YP_009217648.1 NC_029001_p13 tail tape measure protein phrog_991 tail length tape measure protein tail 1 8458 10212
YP_009217681.1 NC_029001_p46 conserve hypothetical protein phrog_8087 unknown function unknown function 1 29828 30097
YP_009217672.1 NC_029001_p37 hypothetical protein phrog_6335 unknown function unknown function 1 26462 26800
YP_009217664.1 NC_029001_p29 hypothetical protein phrog_27416 unknown function unknown function 1 20209 20523
YP_009217645.1 NC_029001_p10 hypothetical protein phrog_365 tail protein tail 1 7395 7844
YP_009217669.1 NC_029001_p34 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 23121 23843
YP_009217649.1 NC_029001_p14 putatice cell wall hydrolase/LysM protein phrog_380 endolysin lysis 1 10212 10850
YP_009217673.1 NC_029001_p38 regulatory protein phrog_8 transcriptional regulator transcription regulation -1 27276 27650
YP_009217647.1 NC_029001_p12 hypothetical protein phrog_10264 unknown function unknown function 1 8292 8465
YP_009217651.1 NC_029001_p16 hypothetical protein phrog_579 unknown function unknown function 1 12626 12952
YP_009217660.1 NC_029001_p25 endolysin protein phrog_435 endolysin lysis 1 17838 18650
YP_009217677.1 NC_029001_p42 hypothetical protein phrog_12681 unknown function unknown function 1 28772 29116