| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029001 |
Definition |
Clostridium phage phiCDHM11 complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
32000 |
Host Name |
Clostridium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
29.25 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009217646.1 | NC_029001_p11 | conserved hypothetical protein (XkdN-like) | phrog_4976 | tail assembly chaperone | tail | 1 | 7891 | 8274 |
| YP_009217678.1 | NC_029001_p43 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29110 | 29514 |
| YP_009217682.1 | NC_029001_p47 | hypothetical protein | phrog_5164 | unknown function | unknown function | 1 | 30116 | 30376 |
| YP_009217643.1 | NC_029001_p8 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 5881 | 6297 |
| YP_009217665.1 | NC_029001_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20507 | 20632 |
| YP_009217659.1 | NC_029001_p24 | holin protein | phrog_1129 | holin | lysis | 1 | 17581 | 17838 |
| YP_009217674.1 | NC_029001_p39 | hypothetical protein | phrog_6407 | unknown function | unknown function | 1 | 27826 | 28008 |
| YP_009217638.1 | NC_029001_p3 | Clp protease protein | phrog_94 | head maturation protease | head and packaging | 1 | 2826 | 3563 |
| YP_009217636.1 | NC_029001_p1 | terminase large subunit protein | phrog_9 | terminase large subunit | head and packaging | 1 | 1 | 1650 |
| YP_009217656.1 | NC_029001_p21 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 15835 | 17115 |
| YP_009217653.1 | NC_029001_p18 | baseplate-J protein | phrog_6 | baseplate wedge subunit | tail | 1 | 13373 | 14425 |
| YP_009217658.1 | NC_029001_p23 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 17334 | 17564 |
| YP_009217679.1 | NC_029001_p44 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 29572 | 29718 |
| YP_009217654.1 | NC_029001_p19 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 14422 | 15039 |
| YP_009217661.1 | NC_029001_p26 | hypothetical protein | phrog_2655 | excisionase | integration and excision | -1 | 18677 | 18886 |
| YP_009217667.1 | NC_029001_p32 | hypothetical protein | phrog_4741 | unknown function | unknown function | -1 | 21417 | 21749 |
| YP_009217644.1 | NC_029001_p9 | tail sheath protein | phrog_1480 | tail sheath | tail | 1 | 6314 | 7381 |
| YP_009217657.1 | NC_029001_p22 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 17115 | 17297 |
| YP_009217683.1 | NC_029001_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30622 | 30739 |
| YP_009217662.1 | NC_029001_p27 | hypothetical protein | phrog_18831 | unknown function | unknown function | 1 | 19036 | 19485 |
| YP_009217640.1 | NC_029001_p5 | head tail joining protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 4834 | 5121 |
| YP_009217675.1 | NC_029001_p40 | hypothetical protein | phrog_4206 | unknown function | unknown function | 1 | 28074 | 28508 |
| YP_009217670.1 | NC_029001_p35 | exonuclease protein | phrog_5173 | unknown function | unknown function | 1 | 24289 | 25638 |
| YP_009217676.1 | NC_029001_p41 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 28606 | 28767 |
| YP_009217639.1 | NC_029001_p4 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 3556 | 4824 |
| YP_009217663.1 | NC_029001_p28 | regulatory protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19497 | 20132 |
| YP_009217652.1 | NC_029001_p17 | conserved hypothetical protein (XkdS-like) | phrog_120 | baseplate wedge subunit | tail | 1 | 12952 | 13380 |
| YP_009217641.1 | NC_029001_p6 | head connector protein | phrog_25 | head closure Hc1 | connector | 1 | 5125 | 5463 |
| YP_009217680.1 | NC_029001_p45 | hypothetical protein | phrog_36952 | unknown function | unknown function | 1 | 29715 | 29789 |
| YP_009217671.1 | NC_029001_p36 | typeIII restriction enzyme protein | phrog_24673 | restriction enzyme III | DNA, RNA and nucleotide metabolism | 1 | 25737 | 26441 |
| YP_009217666.1 | NC_029001_p31 | hypothetical protein | phrog_4021 | unknown function | unknown function | -1 | 20992 | 21273 |
| YP_009217684.1 | NC_029001_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31889 | 32000 |
| YP_009217655.1 | NC_029001_p20 | tail fiber protein | phrog_2137 | tail fiber protein | tail | 1 | 15040 | 15819 |
| YP_009217650.1 | NC_029001_p15 | cell wall hydrolase protein | phrog_400 | tail protein | tail | 1 | 11063 | 12610 |
| YP_009217637.1 | NC_029001_p2 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 1666 | 2820 |
| YP_009217668.1 | NC_029001_p33 | ParA protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 21750 | 22568 |
| YP_009217642.1 | NC_029001_p7 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5456 | 5869 |
| YP_009217648.1 | NC_029001_p13 | tail tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 8458 | 10212 |
| YP_009217681.1 | NC_029001_p46 | conserve hypothetical protein | phrog_8087 | unknown function | unknown function | 1 | 29828 | 30097 |
| YP_009217672.1 | NC_029001_p37 | hypothetical protein | phrog_6335 | unknown function | unknown function | 1 | 26462 | 26800 |
| YP_009217664.1 | NC_029001_p29 | hypothetical protein | phrog_27416 | unknown function | unknown function | 1 | 20209 | 20523 |
| YP_009217645.1 | NC_029001_p10 | hypothetical protein | phrog_365 | tail protein | tail | 1 | 7395 | 7844 |
| YP_009217669.1 | NC_029001_p34 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 23121 | 23843 |
| YP_009217649.1 | NC_029001_p14 | putatice cell wall hydrolase/LysM protein | phrog_380 | endolysin | lysis | 1 | 10212 | 10850 |
| YP_009217673.1 | NC_029001_p38 | regulatory protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 27276 | 27650 |
| YP_009217647.1 | NC_029001_p12 | hypothetical protein | phrog_10264 | unknown function | unknown function | 1 | 8292 | 8465 |
| YP_009217651.1 | NC_029001_p16 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 12626 | 12952 |
| YP_009217660.1 | NC_029001_p25 | endolysin protein | phrog_435 | endolysin | lysis | 1 | 17838 | 18650 |
| YP_009217677.1 | NC_029001_p42 | hypothetical protein | phrog_12681 | unknown function | unknown function | 1 | 28772 | 29116 |