Genomic map of Clostridium phage phiCT453B (NC_029004)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029004
Definition
Clostridium phage phiCT453B, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
36712
Host Name
Clostridium tetani
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
29.12
Number of singletons
5
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009217899.1 NC_029004_p3 Cro/Cl family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 2140 2355
YP_009217928.1 NC_029004_p32 prohead Clp protease phrog_94 head maturation protease head and packaging 1 17661 18416
YP_009217948.1 NC_029004_p52 tail-collar fiber family protein phrog_1780 tail collar fiber protein tail 1 30679 31989
YP_009217916.1 NC_029004_p20 hypothetical protein phrog_24843 unknown function unknown function 1 10582 10989
YP_009217918.1 NC_029004_p22 hypothetical protein phrog_1455 unknown function unknown function 1 11138 11335
YP_009217933.1 NC_029004_p37 hypothetical protein phrog_18448 unknown function unknown function 1 20780 21010
YP_009217915.1 NC_029004_p19 radical SAM domain protein phrog_9298 radical SAM domain protein other 1 9456 10331
YP_009217917.1 NC_029004_p21 hypothetical protein phrog_10701 unknown function unknown function 1 10996 11157
YP_009217940.1 NC_029004_p44 hypothetical protein phrog_13160 unknown function unknown function 1 23782 24141
YP_009217938.1 NC_029004_p42 xkdN-like protein phrog_389 tail protein XkdN-like tail 1 23185 23595
YP_009217944.1 NC_029004_p48 hypothetical protein phrog_579 unknown function unknown function 1 28373 28588
YP_009217905.1 NC_029004_p9 hypothetical protein phrog_3657 unknown function unknown function 1 4376 5197
YP_009217902.1 NC_029004_p6 hypothetical protein phrog_7199 RNA polymerase DNA, RNA and nucleotide metabolism 1 3628 3927
YP_009217925.1 NC_029004_p29 P27 family terminase small subunit phrog_83 terminase small subunit head and packaging 1 14057 14509
YP_009217930.1 NC_029004_p34 head-tail connector phrog_40 head-tail adaptor Ad1 connector 1 19719 19997
YP_009217945.1 NC_029004_p49 xkdS protein phrog_120 baseplate wedge subunit tail 1 28596 29033
YP_009217919.1 NC_029004_p23 hypothetical protein phrog_9430 unknown function unknown function 1 11338 11478
YP_009217926.1 NC_029004_p30 terminase large subunit phrog_9 terminase large subunit head and packaging 1 14521 16245
YP_009217929.1 NC_029004_p33 major capsid protein phrog_10 major head protein head and packaging 1 18453 19682
YP_009217908.1 NC_029004_p12 replisome organizer phrog_10469 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 6223 7125
YP_009217897.1 NC_029004_p1 serine recombinase phrog_95 integrase integration and excision -1 36662 36712
YP_009217897.1 NC_029004_p1 serine recombinase phrog_95 integrase integration and excision -1 1 1479
YP_009217911.1 NC_029004_p15 hypothetical protein phrog_3497 unknown function unknown function 1 7729 8088
YP_009217913.1 NC_029004_p17 hypothetical protein phrog_1389 unknown function unknown function 1 8438 8785
YP_009217900.1 NC_029004_p4 hypothetical protein phrog_17201 unknown function unknown function 1 2366 2539
YP_009217931.1 NC_029004_p35 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 20006 20365
YP_009217903.1 NC_029004_p7 hypothetical protein phrog_11013 unknown function unknown function 1 3909 4130
YP_009217932.1 NC_029004_p36 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 20355 20771
YP_009217946.1 NC_029004_p50 baseplate J protein phrog_6 baseplate wedge subunit tail 1 29026 30072
YP_009217947.1 NC_029004_p51 hypothetical protein phrog_521 tail protein tail 1 30062 30679
YP_009217954.1 NC_029004_p58 hypothetical protein phrog_806 unknown function unknown function 1 34723 35427
YP_009217934.1 NC_029004_p38 hypothetical protein phrog_525 unknown function unknown function 1 21034 21489
YP_009217952.1 NC_029004_p56 holin phrog_199 holin lysis 1 33445 33885
YP_009217955.1 NC_029004_p59 XRE transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 35485 35763
YP_009217939.1 NC_029004_p43 hypothetical protein singleton unknown function unknown function 1 23619 23738
YP_009217943.1 NC_029004_p47 xkdQ protein phrog_400 tail protein tail 1 27253 28347
YP_009217949.1 NC_029004_p53 hypothetical protein singleton unknown function unknown function 1 31989 32318
YP_009217920.1 NC_029004_p24 hypothetical protein phrog_15483 unknown function unknown function 1 11478 11702
YP_009217901.1 NC_029004_p5 anti-repressor phrog_373 anti-repressor transcription regulation 1 2811 3542
YP_009217937.1 NC_029004_p41 hypothetical protein phrog_15580 unknown function unknown function 1 23031 23183
YP_009217910.1 NC_029004_p14 hypothetical protein phrog_16121 unknown function unknown function 1 7276 7650
YP_009217953.1 NC_029004_p57 N-acetylmuramoyl-L-alanine amidase phrog_35436 amidase lysis 1 33866 34666
YP_009217935.1 NC_029004_p39 tail sheath protein phrog_1480 tail sheath tail 1 21494 22555
YP_009217942.1 NC_029004_p46 xkdP protein phrog_5184 unknown function unknown function 1 26837 27256
YP_009217921.1 NC_029004_p25 transcriptional regulator phrog_36 transcriptional regulator transcription regulation 1 11727 12248
YP_009217912.1 NC_029004_p16 holiday junction resolvase phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 8085 8441
YP_009217950.1 NC_029004_p54 xkdX protein singleton unknown function unknown function 1 32311 32463
YP_009217909.1 NC_029004_p13 hypothetical protein phrog_13235 unknown function unknown function 1 7176 7301
YP_009217914.1 NC_029004_p18 hypothetical protein singleton unknown function unknown function 1 8842 9018
YP_009217906.1 NC_029004_p10 hypothetical protein phrog_1227 exonuclease DNA, RNA and nucleotide metabolism 1 5184 5963
YP_009217898.1 NC_029004_p2 XRE family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 1502 1903
YP_009217922.1 NC_029004_p26 hypothetical protein singleton unknown function unknown function -1 12310 13044
YP_009217904.1 NC_029004_p8 hypothetical protein phrog_10625 unknown function unknown function 1 4196 4375
YP_009217923.1 NC_029004_p27 hypothetical protein phrog_3928 unknown function unknown function 1 13331 13516
YP_009217941.1 NC_029004_p45 tail-tape measure protein phrog_991 tail length tape measure protein tail 1 24211 26790
YP_009217957.1 NC_029004_p61 hypothetical protein phrog_15134 unknown function unknown function 1 36334 36621
YP_009217956.1 NC_029004_p60 Cro/Cl family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 35838 36074
YP_009217927.1 NC_029004_p31 portal protein phrog_12 portal protein head and packaging 1 16436 17668
YP_009217907.1 NC_029004_p11 hypothetical protein phrog_37910 unknown function unknown function 1 5979 6218
YP_009217924.1 NC_029004_p28 HNH endonuclease domain-containing protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13537 13965
YP_009217951.1 NC_029004_p55 Rha family regulatory protein phrog_373 anti-repressor transcription regulation 1 32642 33295
YP_009217936.1 NC_029004_p40 XkdM protein phrog_365 tail protein tail 1 22575 23006