Genomic map of Clostridium phage phiCT19406C (NC_029006)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029006
Definition
Clostridium phage phiCT19406C, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
35703
Host Name
Clostridium tetani
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
29.18
Number of singletons
12
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009218072.1 NC_029006_p43 hypothetical protein phrog_78 tail terminator connector 1 20719 21072
YP_009218032.1 NC_029006_p3 XRE transcriptional regulator singleton unknown function unknown function 1 2577 2801
YP_009218034.1 NC_029006_p5 anti-repressor phrog_373 anti-repressor transcription regulation 1 3097 3873
YP_009218055.1 NC_029006_p26 hypothetical protein phrog_15483 unknown function unknown function 1 11563 11787
YP_009218083.1 NC_029006_p54 XhlA hemolysin phrog_689 holin lysis 1 31404 31628
YP_009218063.1 NC_029006_p34 terminase large subunit phrog_9 terminase large subunit head and packaging 1 14431 16143
YP_009218043.1 NC_029006_p14 hypothetical protein phrog_13235 unknown function unknown function 1 7628 7759
YP_009218058.1 NC_029006_p29 hypothetical protein phrog_16875 unknown function unknown function 1 12705 12938
YP_009218054.1 NC_029006_p25 hypothetical protein phrog_9430 unknown function unknown function 1 11426 11566
YP_009218057.1 NC_029006_p28 hypothetical protein phrog_10757 unknown function unknown function 1 12339 12491
YP_009218045.1 NC_029006_p16 hypothetical protein phrog_1029 unknown function unknown function 1 8166 8882
YP_009218051.1 NC_029006_p22 hypothetical protein phrog_9181 unknown function unknown function 1 10696 10884
YP_009218082.1 NC_029006_p53 pre-neck appendage-like protein singleton unknown function unknown function 1 29132 31114
YP_009218067.1 NC_029006_p38 major capsid protein phrog_10 major head protein head and packaging 1 18394 19527
YP_009218052.1 NC_029006_p23 hypothetical protein singleton unknown function unknown function 1 10897 11040
YP_009218074.1 NC_029006_p45 major tail protein phrog_88 major tail protein tail 1 21320 21904
YP_009218077.1 NC_029006_p48 tail-tape measure protein phrog_1533 tail length tape measure protein tail 1 22645 26091
YP_009218046.1 NC_029006_p17 hypothetical protein phrog_3497 unknown function unknown function 1 8965 9267
YP_009218075.1 NC_029006_p46 RNA poylmerase subunit sigma phrog_16952 RNA polymerase DNA, RNA and nucleotide metabolism 1 22034 22390
YP_009218038.1 NC_029006_p9 hypothetical protein phrog_10625 unknown function unknown function 1 4745 4924
YP_009218085.1 NC_029006_p56 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 31922 32914
YP_009218050.1 NC_029006_p21 DNA methyltransferase phrog_111 DNA methyltransferase other 1 10226 10648
YP_009218039.1 NC_029006_p10 hypothetical protein phrog_3657 unknown function unknown function 1 4925 5746
YP_009218064.1 NC_029006_p35 hypothetical protein phrog_26072 unknown function unknown function 1 16131 16337
YP_009218044.1 NC_029006_p15 replication terminator protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 7759 8142
YP_009218033.1 NC_029006_p4 hypothetical protein singleton unknown function unknown function 1 2773 2946
YP_009218042.1 NC_029006_p13 replisome organizer phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 6709 7614
YP_009218078.1 NC_029006_p49 tail protein phrog_33 distal tail protein Dit tail 1 26084 26782
YP_009218047.1 NC_029006_p18 holiday junction resolvase phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 9264 9617
YP_009218059.1 NC_029006_p30 hypothetical protein phrog_3928 unknown function unknown function 1 12901 13080
YP_009218069.1 NC_029006_p40 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 19845 20192
YP_009218092.1 NC_029006_p63 hypothetical protein phrog_15134 unknown function unknown function 1 35230 35508
YP_009218066.1 NC_029006_p37 prohead Clp protease phrog_94 head maturation protease head and packaging 1 17597 18316
YP_009218087.1 NC_029006_p58 hypothetical protein phrog_26544 unknown function unknown function 1 33237 33392
YP_009218041.1 NC_029006_p12 hypothetical protein singleton unknown function unknown function 1 6528 6704
YP_009218037.1 NC_029006_p8 hypothetical protein phrog_11013 unknown function unknown function 1 4459 4698
YP_009218056.1 NC_029006_p27 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 11812 12327
YP_009218086.1 NC_029006_p57 hypothetical protein phrog_24161 unknown function unknown function 1 33058 33198
YP_009218060.1 NC_029006_p31 hypothetical protein singleton unknown function unknown function 1 13158 13355
YP_009218084.1 NC_029006_p55 holin phrog_1129 holin lysis 1 31639 31905
YP_009218062.1 NC_029006_p33 P27 family terminase small subunit phrog_83 terminase small subunit head and packaging 1 13974 14438
YP_009218088.1 NC_029006_p59 hypothetical protein phrog_2277 unknown function unknown function 1 33379 33561
YP_009218071.1 NC_029006_p42 hypothetical protein singleton unknown function unknown function 1 20565 20759
YP_009218089.1 NC_029006_p60 hypothetical protein phrog_806 unknown function unknown function 1 33685 34308
YP_009218049.1 NC_029006_p20 hypothetical protein singleton unknown function unknown function 1 10001 10168
YP_009218036.1 NC_029006_p7 hypothetical protein phrog_7199 RNA polymerase DNA, RNA and nucleotide metabolism 1 4178 4477
YP_009218080.1 NC_029006_p51 hypothetical protein singleton unknown function unknown function 1 28677 28886
YP_009218068.1 NC_029006_p39 head-tail connector phrog_40 head-tail adaptor Ad1 connector 1 19577 19858
YP_009218031.1 NC_029006_p2 Cro/Cl family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 1953 2339
YP_009218061.1 NC_029006_p32 HNH endonuclease domain protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13418 13861
YP_009218035.1 NC_029006_p6 hypothetical protein phrog_6593 unknown function unknown function 1 3961 4173
YP_009218090.1 NC_029006_p61 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 34366 34644
YP_009218048.1 NC_029006_p19 hypothetical protein phrog_1389 unknown function unknown function 1 9617 9949
YP_009218081.1 NC_029006_p52 hypothetical protein singleton unknown function unknown function 1 28888 29118
YP_009218079.1 NC_029006_p50 endopeptidase/tail protein phrog_1067 minor head protein head and packaging 1 26783 28687
YP_009218073.1 NC_029006_p44 hypothetical protein singleton unknown function unknown function 1 21090 21293
YP_009218091.1 NC_029006_p62 Cro/Cl family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 34719 34955
YP_009218065.1 NC_029006_p36 portal protein phrog_12 portal protein head and packaging 1 16368 17597
YP_009218053.1 NC_029006_p24 YopX-like protein phrog_98 unknown function unknown function 1 11037 11426
YP_009218076.1 NC_029006_p47 hypothetical protein singleton unknown function unknown function 1 22450 22629
YP_009218030.1 NC_029006_p1 serine recombinase phrog_95 integrase integration and excision -1 219 1910
YP_009218070.1 NC_029006_p41 head-tail adaptor protein phrog_5 tail completion or Neck1 protein connector 1 20194 20553
YP_009218040.1 NC_029006_p11 hypothetical protein phrog_1227 exonuclease DNA, RNA and nucleotide metabolism 1 5733 6512