Genomic map of Bacillus phage phi4J1 (NC_029008)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029008
Definition
Bacillus phage phi4J1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41486
Host Name
Bacillus thuringiensis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
35.88
Number of singletons
6
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009218185.1 NC_029008_p52 hypothetical protein phrog_5459 unknown function unknown function 1 35326 35628
YP_009218177.1 NC_029008_p44 hypothetical protein phrog_6245 unknown function unknown function 1 32181 32636
YP_009218156.1 NC_029008_p23 RecA phrog_97 UvsX-like recombinase other 1 20730 21809
YP_009218196.1 NC_029008_p63 hypothetical protein phrog_1048 unknown function unknown function 1 39530 39793
YP_009218195.1 NC_029008_p62 hypothetical protein phrog_1048 unknown function unknown function 1 39288 39530
YP_009218192.1 NC_029008_p59 hypothetical protein phrog_16373 unknown function unknown function 1 38342 38518
YP_009218135.1 NC_029008_p2 PBSX family terminase large subunit phrog_2 terminase large subunit head and packaging 1 914 2188
YP_009218152.1 NC_029008_p19 holin phrog_199 holin lysis 1 18923 19348
YP_009218170.1 NC_029008_p37 DnaB/DnaD family replication initiation and membrane attachment protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 29051 29956
YP_009218141.1 NC_029008_p8 hypothetical protein phrog_132 head-tail adaptor connector 1 6418 6726
YP_009218149.1 NC_029008_p16 distal tail protein phrog_202 distal tail protein Dit tail 1 12164 13642
YP_009218150.1 NC_029008_p17 tail fiber phrog_1775 minor head protein head and packaging 1 13639 18495
YP_009218138.1 NC_029008_p5 hypothetical protein phrog_1048 unknown function unknown function 1 4454 4747
YP_009218134.1 NC_029008_p1 terminase small subunit phrog_2606 terminase small subunit head and packaging 1 1 924
YP_009218154.1 NC_029008_p21 hypothetical protein singleton unknown function unknown function 1 20347 20496
YP_009218186.1 NC_029008_p53 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 35749 35997
YP_009218137.1 NC_029008_p4 hypothetical protein phrog_115 minor head protein head and packaging 1 3558 4475
YP_009218136.1 NC_029008_p3 portal protein phrog_64 portal protein head and packaging 1 2201 3634
YP_009218148.1 NC_029008_p15 tail tape measure protein phrog_58 tail length tape measure protein tail 1 9212 12151
YP_009218164.1 NC_029008_p31 hypothetical protein phrog_4292 unknown function unknown function 1 26090 26245
YP_009218162.1 NC_029008_p29 toxin-antitoxin system antitoxin component phrog_3 transcriptional repressor transcription regulation 1 25580 25834
YP_009218184.1 NC_029008_p51 hypothetical protein phrog_17974 unknown function unknown function 1 35033 35278
YP_009218183.1 NC_029008_p50 hypothetical protein phrog_37176 unknown function unknown function 1 34840 34986
YP_009218179.1 NC_029008_p46 hypothetical protein phrog_1065 unknown function unknown function 1 33227 33784
YP_009218165.1 NC_029008_p32 hypothetical protein phrog_463 anti-repressor transcription regulation 1 26261 27079
YP_009218172.1 NC_029008_p39 hypothetical protein phrog_2521 unknown function unknown function 1 30431 30670
YP_009218197.1 NC_029008_p64 hypothetical protein phrog_11304 unknown function unknown function 1 40053 40373
YP_009218191.1 NC_029008_p58 hypothetical protein phrog_38175 unknown function unknown function -1 37940 38140
YP_009218169.1 NC_029008_p36 hypothetical protein phrog_6461 unknown function unknown function 1 28619 28957
YP_009218178.1 NC_029008_p45 dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 32633 33214
YP_009218198.1 NC_029008_p65 hypothetical protein phrog_13356 unknown function unknown function 1 40407 40784
YP_009218139.1 NC_029008_p6 scaffold protein phrog_172 head scaffolding protein head and packaging 1 4827 5507
YP_009218143.1 NC_029008_p10 protein of unknown function DUF646 phrog_5 tail completion or Neck1 protein connector 1 7042 7449
YP_009218168.1 NC_029008_p35 hypothetical protein phrog_1029 unknown function unknown function 1 27758 28471
YP_009218199.1 NC_029008_p66 hypothetical protein phrog_8488 unknown function unknown function 1 40817 41146
YP_009218173.1 NC_029008_p40 hypothetical protein singleton unknown function unknown function 1 30694 30873
YP_009218176.1 NC_029008_p43 hypothetical protein phrog_7695 unknown function unknown function 1 31744 32181
YP_009218190.1 NC_029008_p57 positive control sigma-like factor phrog_1190 RNA polymerase sigma factor transcription regulation 1 37132 37755
YP_009218193.1 NC_029008_p60 hypothetical protein phrog_7303 unknown function unknown function 1 38648 38890
YP_009218155.1 NC_029008_p22 hypothetical protein singleton unknown function unknown function -1 20497 20649
YP_009218145.1 NC_029008_p12 hypothetical protein phrog_885 major tail protein tail 1 7832 8425
YP_009218200.1 NC_029008_p67 hypothetical protein phrog_2395 unknown function unknown function 1 41133 41345
YP_009218160.1 NC_029008_p27 hypothetical protein phrog_87 metallo-protease other -1 24461 24901
YP_009218147.1 NC_029008_p14 hypothetical protein phrog_6924 unknown function unknown function 1 8936 9211
YP_009218187.1 NC_029008_p54 hypothetical protein singleton unknown function unknown function 1 36015 36197
YP_009218182.1 NC_029008_p49 toxin-antitoxin system antitoxin component phrog_20481 toxin moron, auxiliary metabolic gene and host takeover 1 34603 34797
YP_009218161.1 NC_029008_p28 DNA-binding helix-turn-helix protein phrog_8 transcriptional regulator transcription regulation -1 24915 25472
YP_009218153.1 NC_029008_p20 N-acetylmuramoyl-L-alanine amidase phrog_2338 endolysin lysis 1 19348 20304
YP_009218166.1 NC_029008_p33 hypothetical protein phrog_14961 unknown function unknown function 1 27091 27279
YP_009218188.1 NC_029008_p55 recombination protein U phrog_843 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 36237 36767
YP_009218163.1 NC_029008_p30 hypothetical protein phrog_989 unknown function unknown function 1 25824 26036
YP_009218146.1 NC_029008_p13 hypothetical protein phrog_1021 unknown function unknown function 1 8472 8900
YP_009218181.1 NC_029008_p48 hypothetical protein singleton unknown function unknown function 1 34121 34564
YP_009218140.1 NC_029008_p7 major capsid protein phrog_267 major head protein head and packaging 1 5525 6367
YP_009218158.1 NC_029008_p25 hypothetical protein singleton unknown function unknown function -1 23254 23370
YP_009218171.1 NC_029008_p38 hypothetical protein phrog_4959 unknown function unknown function 1 29968 30447
YP_009218159.1 NC_029008_p26 site-specific recombinase phrog_1 integrase integration and excision -1 23367 24434
YP_009218174.1 NC_029008_p41 hypothetical protein phrog_10273 unknown function unknown function 1 30846 31139
YP_009218167.1 NC_029008_p34 hypothetical protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 27306 27740
YP_009218189.1 NC_029008_p56 hypothetical protein phrog_3910 transcriptional regulator transcription regulation 1 36787 37110
YP_009218194.1 NC_029008_p61 hypothetical protein phrog_4705 unknown function unknown function 1 38883 39149
YP_009218157.1 NC_029008_p24 hypothetical protein phrog_1835 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 21989 22972
YP_009218144.1 NC_029008_p11 hypothetical protein phrog_957 head protein head and packaging 1 7455 7817
YP_009218175.1 NC_029008_p42 hypothetical protein phrog_5337 unknown function unknown function 1 31163 31630
YP_009218142.1 NC_029008_p9 head-tail adaptor phrog_1059 head-tail adaptor connector 1 6723 7067
YP_009218180.1 NC_029008_p47 hypothetical protein phrog_15393 unknown function unknown function 1 33756 34088
YP_009218151.1 NC_029008_p18 hypothetical protein phrog_4921 unknown function unknown function 1 18511 18885