| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029019 |
Definition |
Stenotrophomonas phage vB_SmaS-DLP_2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus. |
DB of origin |
REFSEQ |
Length |
42593 |
Host Name |
Stenotrophomonas maltophilia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
53.71 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009219211.1 | NC_029019_p54 | hypothetical protein | phrog_16782 | unknown function | unknown function | 1 | 40531 | 40698 |
| YP_009219199.1 | NC_029019_p42 | hypothetical protein | phrog_10287 | unknown function | unknown function | 1 | 36952 | 37248 |
| YP_009219178.1 | NC_029019_p21 | tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 13217 | 16708 |
| YP_009219214.1 | NC_029019_p57 | hypothetical protein | phrog_6168 | unknown function | unknown function | 1 | 41580 | 41789 |
| YP_009219177.1 | NC_029019_p20 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 12704 | 13138 |
| YP_009219200.1 | NC_029019_p43 | hypothetical protein | phrog_20489 | unknown function | unknown function | 1 | 37269 | 37424 |
| YP_009219182.1 | NC_029019_p25 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 20354 | 21178 |
| YP_009219193.1 | NC_029019_p36 | MazG | phrog_229 | MazG-like pyrophosphatase | other | -1 | 32401 | 32958 |
| YP_009219206.1 | NC_029019_p49 | hypothetical protein | phrog_8564 | unknown function | unknown function | 1 | 39170 | 39385 |
| YP_009219201.1 | NC_029019_p44 | hypothetical protein | phrog_10560 | unknown function | unknown function | 1 | 37399 | 37641 |
| YP_009219168.1 | NC_029019_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7075 | 8052 |
| YP_009219172.1 | NC_029019_p15 | head-tail joining protein | phrog_161 | head closure Hc1 | connector | 1 | 9498 | 9878 |
| YP_009219212.1 | NC_029019_p55 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 40689 | 41156 |
| YP_009219169.1 | NC_029019_p12 | hypothetical protein | phrog_9062 | unknown function | unknown function | 1 | 8122 | 8526 |
| YP_009219187.1 | NC_029019_p30 | dead box helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 27045 | 28700 |
| YP_009219184.1 | NC_029019_p27 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 23624 | 25675 |
| YP_009219160.1 | NC_029019_p3 | endolysin | phrog_1259 | baseplate hub subunit and tail lysozyme | tail | 1 | 511 | 1056 |
| YP_009219203.1 | NC_029019_p46 | hypothetical protein | phrog_11401 | unknown function | unknown function | 1 | 37993 | 38367 |
| YP_009219185.1 | NC_029019_p28 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 25687 | 26829 |
| YP_009219166.1 | NC_029019_p9 | F-like head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5222 | 6316 |
| YP_009219167.1 | NC_029019_p10 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6353 | 7072 |
| YP_009219162.1 | NC_029019_p5 | Rz1 | phrog_1275 | Rz-like spanin | lysis | 1 | 1288 | 1569 |
| YP_009219170.1 | NC_029019_p13 | hypothetical protein | phrog_10405 | virion structural protein | head and packaging | 1 | 8592 | 8963 |
| YP_009219208.1 | NC_029019_p51 | hypothetical protein | phrog_14000 | unknown function | unknown function | 1 | 39622 | 39927 |
| YP_009219195.1 | NC_029019_p38 | replicative primase helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 33274 | 35595 |
| YP_009219165.1 | NC_029019_p8 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3705 | 5210 |
| YP_009219163.1 | NC_029019_p6 | small terminase subunit | phrog_5334 | terminase small subunit | head and packaging | 1 | 1627 | 2115 |
| YP_009219215.1 | NC_029019_p58 | hypothetical protein | phrog_7597 | unknown function | unknown function | 1 | 41873 | 42445 |
| YP_009219174.1 | NC_029019_p17 | major tail tube protein | phrog_290 | minor tail protein | tail | 1 | 10343 | 11878 |
| YP_009219194.1 | NC_029019_p37 | transcriptional regulator | phrog_13059 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33078 | 33284 |
| YP_009219198.1 | NC_029019_p41 | hypothetical protein | phrog_23937 | unknown function | unknown function | 1 | 36764 | 36955 |
| YP_009219158.1 | NC_029019_p1 | hypothetical protein | phrog_462 | lipoprotein | other | 1 | 1 | 255 |
| YP_009219207.1 | NC_029019_p50 | hypothetical protein | phrog_13844 | unknown function | unknown function | 1 | 39382 | 39561 |
| YP_009219188.1 | NC_029019_p31 | RecB exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28693 | 29790 |
| YP_009219209.1 | NC_029019_p52 | hypothetical protein | phrog_14614 | endolysin | lysis | 1 | 39944 | 40234 |
| YP_009219186.1 | NC_029019_p29 | hypothetical protein | phrog_11184 | unknown function | unknown function | -1 | 26813 | 27040 |
| YP_009219173.1 | NC_029019_p16 | minor tail protein | phrog_179 | tail terminator | connector | 1 | 9875 | 10330 |
| YP_009219180.1 | NC_029019_p23 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 17671 | 18636 |
| YP_009219192.1 | NC_029019_p35 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 31884 | 32324 |
| YP_009219196.1 | NC_029019_p39 | hypothetical protein | phrog_21416 | unknown function | unknown function | 1 | 35741 | 36193 |
| YP_009219191.1 | NC_029019_p34 | RecA | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31113 | 31829 |
| YP_009219190.1 | NC_029019_p33 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30302 | 31054 |
| YP_009219197.1 | NC_029019_p40 | hypothetical protein | phrog_20574 | unknown function | unknown function | 1 | 36281 | 36430 |
| YP_009219159.1 | NC_029019_p2 | holin | phrog_1356 | holin | lysis | 1 | 252 | 518 |
| YP_009219210.1 | NC_029019_p53 | hypothetical protein | phrog_9844 | unknown function | unknown function | 1 | 40227 | 40460 |
| YP_009219171.1 | NC_029019_p14 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 8976 | 9494 |
| YP_009219213.1 | NC_029019_p56 | hypothetical protein | phrog_9241 | unknown function | unknown function | 1 | 41162 | 41545 |
| YP_009219161.1 | NC_029019_p4 | Rz | phrog_1026 | Rz-like spanin | lysis | 1 | 1068 | 1373 |
| YP_009219181.1 | NC_029019_p24 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 18642 | 20354 |
| YP_009219175.1 | NC_029019_p18 | tail chaperonin | phrog_313 | Tail assembly chaperone | tail | 1 | 11942 | 12370 |
| YP_009219189.1 | NC_029019_p32 | hypothetical protein | phrog_34762 | unknown function | unknown function | -1 | 29959 | 30120 |
| YP_009219202.1 | NC_029019_p45 | hypothetical protein | phrog_22104 | unknown function | unknown function | 1 | 37748 | 37945 |
| YP_009219164.1 | NC_029019_p7 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2096 | 3691 |
| YP_009219176.1 | NC_029019_p19 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 12379 | 12735 |
| YP_009219204.1 | NC_029019_p47 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 38428 | 38649 |
| YP_009219179.1 | NC_029019_p22 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 16709 | 17671 |
| YP_009219183.1 | NC_029019_p26 | central tail hub | phrog_1101 | tail protein | tail | 1 | 21182 | 23623 |
| YP_009219205.1 | NC_029019_p48 | Vsr endonuclease | phrog_824 | unknown function | unknown function | 1 | 38646 | 39182 |