Genomic map of Stenotrophomonas phage vB_SmaS-DLP_2 (NC_029019)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029019
Definition
Stenotrophomonas phage vB_SmaS-DLP_2, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus.
DB of origin
REFSEQ
Length
42593
Host Name
Stenotrophomonas maltophilia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
53.71
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009219211.1 NC_029019_p54 hypothetical protein phrog_16782 unknown function unknown function 1 40531 40698
YP_009219199.1 NC_029019_p42 hypothetical protein phrog_10287 unknown function unknown function 1 36952 37248
YP_009219178.1 NC_029019_p21 tape measure protein phrog_3336 tail length tape measure protein tail 1 13217 16708
YP_009219214.1 NC_029019_p57 hypothetical protein phrog_6168 unknown function unknown function 1 41580 41789
YP_009219177.1 NC_029019_p20 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 12704 13138
YP_009219200.1 NC_029019_p43 hypothetical protein phrog_20489 unknown function unknown function 1 37269 37424
YP_009219182.1 NC_029019_p25 hypothetical protein phrog_778 tail assembly protein tail 1 20354 21178
YP_009219193.1 NC_029019_p36 MazG phrog_229 MazG-like pyrophosphatase other -1 32401 32958
YP_009219206.1 NC_029019_p49 hypothetical protein phrog_8564 unknown function unknown function 1 39170 39385
YP_009219201.1 NC_029019_p44 hypothetical protein phrog_10560 unknown function unknown function 1 37399 37641
YP_009219168.1 NC_029019_p11 major capsid protein phrog_247 major head protein head and packaging 1 7075 8052
YP_009219172.1 NC_029019_p15 head-tail joining protein phrog_161 head closure Hc1 connector 1 9498 9878
YP_009219212.1 NC_029019_p55 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 40689 41156
YP_009219169.1 NC_029019_p12 hypothetical protein phrog_9062 unknown function unknown function 1 8122 8526
YP_009219187.1 NC_029019_p30 dead box helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 27045 28700
YP_009219184.1 NC_029019_p27 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 23624 25675
YP_009219160.1 NC_029019_p3 endolysin phrog_1259 baseplate hub subunit and tail lysozyme tail 1 511 1056
YP_009219203.1 NC_029019_p46 hypothetical protein phrog_11401 unknown function unknown function 1 37993 38367
YP_009219185.1 NC_029019_p28 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 25687 26829
YP_009219166.1 NC_029019_p9 F-like head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 5222 6316
YP_009219167.1 NC_029019_p10 scaffold protein phrog_206 head scaffolding protein head and packaging 1 6353 7072
YP_009219162.1 NC_029019_p5 Rz1 phrog_1275 Rz-like spanin lysis 1 1288 1569
YP_009219170.1 NC_029019_p13 hypothetical protein phrog_10405 virion structural protein head and packaging 1 8592 8963
YP_009219208.1 NC_029019_p51 hypothetical protein phrog_14000 unknown function unknown function 1 39622 39927
YP_009219195.1 NC_029019_p38 replicative primase helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism 1 33274 35595
YP_009219165.1 NC_029019_p8 portal protein phrog_145 portal protein head and packaging 1 3705 5210
YP_009219163.1 NC_029019_p6 small terminase subunit phrog_5334 terminase small subunit head and packaging 1 1627 2115
YP_009219215.1 NC_029019_p58 hypothetical protein phrog_7597 unknown function unknown function 1 41873 42445
YP_009219174.1 NC_029019_p17 major tail tube protein phrog_290 minor tail protein tail 1 10343 11878
YP_009219194.1 NC_029019_p37 transcriptional regulator phrog_13059 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 33078 33284
YP_009219198.1 NC_029019_p41 hypothetical protein phrog_23937 unknown function unknown function 1 36764 36955
YP_009219158.1 NC_029019_p1 hypothetical protein phrog_462 lipoprotein other 1 1 255
YP_009219207.1 NC_029019_p50 hypothetical protein phrog_13844 unknown function unknown function 1 39382 39561
YP_009219188.1 NC_029019_p31 RecB exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 28693 29790
YP_009219209.1 NC_029019_p52 hypothetical protein phrog_14614 endolysin lysis 1 39944 40234
YP_009219186.1 NC_029019_p29 hypothetical protein phrog_11184 unknown function unknown function -1 26813 27040
YP_009219173.1 NC_029019_p16 minor tail protein phrog_179 tail terminator connector 1 9875 10330
YP_009219180.1 NC_029019_p23 hypothetical protein phrog_687 structural protein head and packaging 1 17671 18636
YP_009219192.1 NC_029019_p35 hypothetical protein phrog_2480 unknown function unknown function -1 31884 32324
YP_009219196.1 NC_029019_p39 hypothetical protein phrog_21416 unknown function unknown function 1 35741 36193
YP_009219191.1 NC_029019_p34 RecA phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31113 31829
YP_009219190.1 NC_029019_p33 hypothetical protein phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 30302 31054
YP_009219197.1 NC_029019_p40 hypothetical protein phrog_20574 unknown function unknown function 1 36281 36430
YP_009219159.1 NC_029019_p2 holin phrog_1356 holin lysis 1 252 518
YP_009219210.1 NC_029019_p53 hypothetical protein phrog_9844 unknown function unknown function 1 40227 40460
YP_009219171.1 NC_029019_p14 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 8976 9494
YP_009219213.1 NC_029019_p56 hypothetical protein phrog_9241 unknown function unknown function 1 41162 41545
YP_009219161.1 NC_029019_p4 Rz phrog_1026 Rz-like spanin lysis 1 1068 1373
YP_009219181.1 NC_029019_p24 hypothetical protein phrog_1082 tail assembly protein tail 1 18642 20354
YP_009219175.1 NC_029019_p18 tail chaperonin phrog_313 Tail assembly chaperone tail 1 11942 12370
YP_009219189.1 NC_029019_p32 hypothetical protein phrog_34762 unknown function unknown function -1 29959 30120
YP_009219202.1 NC_029019_p45 hypothetical protein phrog_22104 unknown function unknown function 1 37748 37945
YP_009219164.1 NC_029019_p7 large terminase subunit phrog_2 terminase large subunit head and packaging 1 2096 3691
YP_009219176.1 NC_029019_p19 tail chaperonin phrog_3817 tail chaperonin tail 1 12379 12735
YP_009219204.1 NC_029019_p47 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 38428 38649
YP_009219179.1 NC_029019_p22 hypothetical protein phrog_687 structural protein head and packaging 1 16709 17671
YP_009219183.1 NC_029019_p26 central tail hub phrog_1101 tail protein tail 1 21182 23623
YP_009219205.1 NC_029019_p48 Vsr endonuclease phrog_824 unknown function unknown function 1 38646 39182