| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029022 |
Definition |
Clostridium phage phiCT9441A, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
46895 |
Host Name |
Clostridium tetani |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
28.69 |
Number of singletons |
10 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009219396.1 | NC_029022_p30 | hypothetical protein | phrog_26280 | unknown function | unknown function | 1 | 13688 | 14449 |
| YP_009219436.1 | NC_029022_p70 | Rhs family protein | singleton | unknown function | unknown function | 1 | 40933 | 41127 |
| YP_009219370.1 | NC_029022_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2221 | 2679 |
| YP_009219413.1 | NC_029022_p47 | tail protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 25228 | 25668 |
| YP_009219431.1 | NC_029022_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37185 | 37526 |
| YP_009219401.1 | NC_029022_p35 | terminase small subunit | phrog_309 | terminase small subunit | head and packaging | 1 | 16921 | 17427 |
| YP_009219395.1 | NC_029022_p29 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 13037 | 13564 |
| YP_009219390.1 | NC_029022_p24 | hypothetical protein | phrog_10701 | unknown function | unknown function | 1 | 11994 | 12155 |
| YP_009219397.1 | NC_029022_p31 | XRE family transcriptional regulator | phrog_2439 | transcriptional regulator | transcription regulation | 1 | 14483 | 15649 |
| YP_009219393.1 | NC_029022_p27 | hypothetical protein | phrog_17601 | unknown function | unknown function | 1 | 12476 | 12676 |
| YP_009219375.1 | NC_029022_p9 | hypothetical protein | phrog_15040 | unknown function | unknown function | -1 | 5337 | 5801 |
| YP_009219400.1 | NC_029022_p34 | hypothetical protein | phrog_17522 | unknown function | unknown function | 1 | 16548 | 16748 |
| YP_009219429.1 | NC_029022_p63 | Cro/CI family transcriptional regulator | phrog_6 | baseplate wedge subunit | tail | 1 | 34656 | 35696 |
| YP_009219435.1 | NC_029022_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39368 | 40147 |
| YP_009219374.1 | NC_029022_p8 | antirepressor KilAC domain protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 4486 | 5304 |
| YP_009219418.1 | NC_029022_p52 | xkdK-like tail sheath protein | phrog_279 | tail sheath | tail | 1 | 26643 | 27938 |
| YP_009219410.1 | NC_029022_p44 | coat protein | phrog_247 | major head protein | head and packaging | 1 | 23499 | 24497 |
| YP_009219391.1 | NC_029022_p25 | hypothetical protein | phrog_1455 | unknown function | unknown function | 1 | 12136 | 12333 |
| YP_009219407.1 | NC_029022_p41 | hypothetical protein | phrog_10400 | unknown function | unknown function | 1 | 22371 | 22511 |
| YP_009219386.1 | NC_029022_p20 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9840 | 10268 |
| YP_009219414.1 | NC_029022_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25665 | 25871 |
| YP_009219423.1 | NC_029022_p57 | lipoprotein | phrog_806 | unknown function | unknown function | 1 | 29607 | 30200 |
| YP_009219419.1 | NC_029022_p53 | xkdM-like portal protein | singleton | unknown function | unknown function | 1 | 27954 | 28187 |
| YP_009219434.1 | NC_029022_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38517 | 39095 |
| YP_009219422.1 | NC_029022_p56 | hypothetical protein | phrog_31229 | unknown function | unknown function | 1 | 29140 | 29523 |
| YP_009219388.1 | NC_029022_p22 | DPS-like general stress protein | phrog_3636 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 11069 | 11509 |
| YP_009219380.1 | NC_029022_p14 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7292 | 7864 |
| YP_009219420.1 | NC_029022_p54 | xkdM-like portal protein | phrog_23960 | tail protein | tail | 1 | 28187 | 28417 |
| YP_009219442.1 | NC_029022_p76 | hypothetical protein | phrog_18586 | unknown function | unknown function | 1 | 44455 | 45261 |
| YP_009219376.1 | NC_029022_p10 | hypothetical protein | phrog_15837 | unknown function | unknown function | 1 | 5836 | 5970 |
| YP_009219371.1 | NC_029022_p5 | XRE transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2684 | 3601 |
| YP_009219443.1 | NC_029022_p77 | DNA polymerase III subunit epsilon | phrog_14632 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 45613 | 46755 |
| YP_009219427.1 | NC_029022_p61 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 33916 | 34233 |
| YP_009219392.1 | NC_029022_p26 | hypothetical protein | phrog_9430 | unknown function | unknown function | 1 | 12336 | 12476 |
| YP_009219381.1 | NC_029022_p15 | hypothetical protein | phrog_37910 | unknown function | unknown function | 1 | 7876 | 8115 |
| YP_009219387.1 | NC_029022_p21 | hypothetical protein | phrog_11269 | unknown function | unknown function | 1 | 10265 | 10894 |
| YP_009219385.1 | NC_029022_p19 | hypothetical protein | phrog_16121 | unknown function | unknown function | 1 | 9384 | 9758 |
| YP_009219379.1 | NC_029022_p13 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6763 | 7281 |
| YP_009219417.1 | NC_029022_p51 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 26478 | 26642 |
| YP_009219408.1 | NC_029022_p42 | hypothetical protein | phrog_3202 | unknown function | unknown function | -1 | 22512 | 22679 |
| YP_009219378.1 | NC_029022_p12 | hypothetical protein | phrog_11013 | unknown function | unknown function | 1 | 6406 | 6669 |
| YP_009219433.1 | NC_029022_p67 | portal protein | phrog_521 | tail protein | tail | 1 | 37889 | 38533 |
| YP_009219412.1 | NC_029022_p46 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 24854 | 25228 |
| YP_009219402.1 | NC_029022_p36 | terminase | phrog_8148 | terminase small subunit | head and packaging | 1 | 17488 | 17685 |
| YP_009219430.1 | NC_029022_p64 | CopG family transcriptional regulator | phrog_18608 | unknown function | unknown function | 1 | 35700 | 37172 |
| YP_009219394.1 | NC_029022_p28 | XRE family transcriptional regulator | phrog_14101 | transcriptional regulator | transcription regulation | 1 | 12714 | 13025 |
| YP_009219367.1 | NC_029022_p1 | serine recombinase | phrog_95 | integrase | integration and excision | -1 | 37 | 1545 |
| YP_009219440.1 | NC_029022_p74 | hypothetical protein | phrog_17559 | unknown function | unknown function | 1 | 43094 | 44146 |
| YP_009219428.1 | NC_029022_p62 | xkdS-like protein | phrog_120 | baseplate wedge subunit | tail | 1 | 34237 | 34656 |
| YP_009219373.1 | NC_029022_p7 | Cro-like phage repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4238 | 4471 |
| YP_009219369.1 | NC_029022_p3 | hypothetical protein | phrog_5553 | unknown function | unknown function | -1 | 1870 | 2193 |
| YP_009219425.1 | NC_029022_p59 | xkdP-like LysM domain-containing protein | phrog_380 | endolysin | lysis | 1 | 32257 | 32928 |
| YP_009219416.1 | NC_029022_p50 | hypothetical protein | phrog_12483 | unknown function | unknown function | 1 | 26288 | 26497 |
| YP_009219426.1 | NC_029022_p60 | xkdP-like protein | phrog_400 | tail protein | tail | 1 | 32939 | 33913 |
| YP_009219405.1 | NC_029022_p39 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 20319 | 22001 |
| YP_009219411.1 | NC_029022_p45 | head-tail connector | phrog_132 | head-tail adaptor | connector | 1 | 24510 | 24854 |
| YP_009219384.1 | NC_029022_p18 | hypothetical protein | phrog_13235 | unknown function | unknown function | 1 | 9284 | 9433 |
| YP_009219403.1 | NC_029022_p37 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 17669 | 18913 |
| YP_009219421.1 | NC_029022_p55 | xkdN-like protein | phrog_389 | tail protein XkdN-like | tail | 1 | 28433 | 28843 |
| YP_009219382.1 | NC_029022_p16 | replisome organizer | phrog_10469 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8120 | 9013 |
| YP_009219406.1 | NC_029022_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22003 | 22335 |
| YP_009219409.1 | NC_029022_p43 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 22864 | 23478 |
| YP_009219415.1 | NC_029022_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25840 | 26001 |
| YP_009219372.1 | NC_029022_p6 | Cro/CI family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 3618 | 4085 |
| YP_009219437.1 | NC_029022_p71 | XhlA hemolysin | singleton | unknown function | unknown function | 1 | 41462 | 41779 |
| YP_009219398.1 | NC_029022_p32 | hypothetical protein | phrog_3928 | unknown function | unknown function | 1 | 15871 | 16047 |
| YP_009219439.1 | NC_029022_p73 | glucosaminidase /N-acetylmuramoyl-L-alanine amidase | phrog_10967 | endolysin | lysis | 1 | 42061 | 42861 |
| YP_009219399.1 | NC_029022_p33 | hypothetical protein | phrog_18632 | unknown function | unknown function | 1 | 16279 | 16521 |
| YP_009219389.1 | NC_029022_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11868 | 11981 |
| YP_009219404.1 | NC_029022_p38 | SPP1 family portal protein | phrog_64 | portal protein | head and packaging | 1 | 18923 | 20329 |
| YP_009219383.1 | NC_029022_p17 | hypothetical protein | phrog_4601 | unknown function | unknown function | 1 | 9018 | 9278 |
| YP_009219438.1 | NC_029022_p72 | holin | phrog_1129 | holin | lysis | 1 | 41791 | 42060 |
| YP_009219368.1 | NC_029022_p2 | hypothetical protein | phrog_15901 | unknown function | unknown function | -1 | 1568 | 1852 |
| YP_009219441.1 | NC_029022_p75 | hypothetical protein | phrog_18087 | unknown function | unknown function | 1 | 44094 | 44462 |
| YP_009219424.1 | NC_029022_p58 | tail-tape measure protein | phrog_1068 | tail length tape measure protein | tail | 1 | 30254 | 32257 |
| YP_009219432.1 | NC_029022_p66 | hypothetical protein | phrog_1382 | unknown function | unknown function | 1 | 37620 | 37817 |
| YP_009219377.1 | NC_029022_p11 | hypothetical protein | phrog_7199 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6125 | 6424 |