Genomic map of Clostridium phage phiCT9441A (NC_029022)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029022
Definition
Clostridium phage phiCT9441A, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
46895
Host Name
Clostridium tetani
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
28.69
Number of singletons
10
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009219396.1 NC_029022_p30 hypothetical protein phrog_26280 unknown function unknown function 1 13688 14449
YP_009219436.1 NC_029022_p70 Rhs family protein singleton unknown function unknown function 1 40933 41127
YP_009219370.1 NC_029022_p4 hypothetical protein phrog_87 metallo-protease other -1 2221 2679
YP_009219413.1 NC_029022_p47 tail protein phrog_5 tail completion or Neck1 protein connector 1 25228 25668
YP_009219431.1 NC_029022_p65 hypothetical protein singleton unknown function unknown function 1 37185 37526
YP_009219401.1 NC_029022_p35 terminase small subunit phrog_309 terminase small subunit head and packaging 1 16921 17427
YP_009219395.1 NC_029022_p29 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 13037 13564
YP_009219390.1 NC_029022_p24 hypothetical protein phrog_10701 unknown function unknown function 1 11994 12155
YP_009219397.1 NC_029022_p31 XRE family transcriptional regulator phrog_2439 transcriptional regulator transcription regulation 1 14483 15649
YP_009219393.1 NC_029022_p27 hypothetical protein phrog_17601 unknown function unknown function 1 12476 12676
YP_009219375.1 NC_029022_p9 hypothetical protein phrog_15040 unknown function unknown function -1 5337 5801
YP_009219400.1 NC_029022_p34 hypothetical protein phrog_17522 unknown function unknown function 1 16548 16748
YP_009219429.1 NC_029022_p63 Cro/CI family transcriptional regulator phrog_6 baseplate wedge subunit tail 1 34656 35696
YP_009219435.1 NC_029022_p69 hypothetical protein singleton unknown function unknown function 1 39368 40147
YP_009219374.1 NC_029022_p8 antirepressor KilAC domain protein phrog_130 anti-repressor Ant transcription regulation 1 4486 5304
YP_009219418.1 NC_029022_p52 xkdK-like tail sheath protein phrog_279 tail sheath tail 1 26643 27938
YP_009219410.1 NC_029022_p44 coat protein phrog_247 major head protein head and packaging 1 23499 24497
YP_009219391.1 NC_029022_p25 hypothetical protein phrog_1455 unknown function unknown function 1 12136 12333
YP_009219407.1 NC_029022_p41 hypothetical protein phrog_10400 unknown function unknown function 1 22371 22511
YP_009219386.1 NC_029022_p20 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 9840 10268
YP_009219414.1 NC_029022_p48 hypothetical protein singleton unknown function unknown function 1 25665 25871
YP_009219423.1 NC_029022_p57 lipoprotein phrog_806 unknown function unknown function 1 29607 30200
YP_009219419.1 NC_029022_p53 xkdM-like portal protein singleton unknown function unknown function 1 27954 28187
YP_009219434.1 NC_029022_p68 hypothetical protein singleton unknown function unknown function 1 38517 39095
YP_009219422.1 NC_029022_p56 hypothetical protein phrog_31229 unknown function unknown function 1 29140 29523
YP_009219388.1 NC_029022_p22 DPS-like general stress protein phrog_3636 DNA binding protein DNA, RNA and nucleotide metabolism -1 11069 11509
YP_009219380.1 NC_029022_p14 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7292 7864
YP_009219420.1 NC_029022_p54 xkdM-like portal protein phrog_23960 tail protein tail 1 28187 28417
YP_009219442.1 NC_029022_p76 hypothetical protein phrog_18586 unknown function unknown function 1 44455 45261
YP_009219376.1 NC_029022_p10 hypothetical protein phrog_15837 unknown function unknown function 1 5836 5970
YP_009219371.1 NC_029022_p5 XRE transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 2684 3601
YP_009219443.1 NC_029022_p77 DNA polymerase III subunit epsilon phrog_14632 DNA polymerase DNA, RNA and nucleotide metabolism 1 45613 46755
YP_009219427.1 NC_029022_p61 hypothetical protein phrog_579 unknown function unknown function 1 33916 34233
YP_009219392.1 NC_029022_p26 hypothetical protein phrog_9430 unknown function unknown function 1 12336 12476
YP_009219381.1 NC_029022_p15 hypothetical protein phrog_37910 unknown function unknown function 1 7876 8115
YP_009219387.1 NC_029022_p21 hypothetical protein phrog_11269 unknown function unknown function 1 10265 10894
YP_009219385.1 NC_029022_p19 hypothetical protein phrog_16121 unknown function unknown function 1 9384 9758
YP_009219379.1 NC_029022_p13 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6763 7281
YP_009219417.1 NC_029022_p51 hypothetical protein phrog_966 unknown function unknown function 1 26478 26642
YP_009219408.1 NC_029022_p42 hypothetical protein phrog_3202 unknown function unknown function -1 22512 22679
YP_009219378.1 NC_029022_p12 hypothetical protein phrog_11013 unknown function unknown function 1 6406 6669
YP_009219433.1 NC_029022_p67 portal protein phrog_521 tail protein tail 1 37889 38533
YP_009219412.1 NC_029022_p46 hypothetical protein phrog_615 head-tail adaptor connector 1 24854 25228
YP_009219402.1 NC_029022_p36 terminase phrog_8148 terminase small subunit head and packaging 1 17488 17685
YP_009219430.1 NC_029022_p64 CopG family transcriptional regulator phrog_18608 unknown function unknown function 1 35700 37172
YP_009219394.1 NC_029022_p28 XRE family transcriptional regulator phrog_14101 transcriptional regulator transcription regulation 1 12714 13025
YP_009219367.1 NC_029022_p1 serine recombinase phrog_95 integrase integration and excision -1 37 1545
YP_009219440.1 NC_029022_p74 hypothetical protein phrog_17559 unknown function unknown function 1 43094 44146
YP_009219428.1 NC_029022_p62 xkdS-like protein phrog_120 baseplate wedge subunit tail 1 34237 34656
YP_009219373.1 NC_029022_p7 Cro-like phage repressor phrog_3 transcriptional repressor transcription regulation 1 4238 4471
YP_009219369.1 NC_029022_p3 hypothetical protein phrog_5553 unknown function unknown function -1 1870 2193
YP_009219425.1 NC_029022_p59 xkdP-like LysM domain-containing protein phrog_380 endolysin lysis 1 32257 32928
YP_009219416.1 NC_029022_p50 hypothetical protein phrog_12483 unknown function unknown function 1 26288 26497
YP_009219426.1 NC_029022_p60 xkdP-like protein phrog_400 tail protein tail 1 32939 33913
YP_009219405.1 NC_029022_p39 head morphogenesis protein phrog_115 minor head protein head and packaging 1 20319 22001
YP_009219411.1 NC_029022_p45 head-tail connector phrog_132 head-tail adaptor connector 1 24510 24854
YP_009219384.1 NC_029022_p18 hypothetical protein phrog_13235 unknown function unknown function 1 9284 9433
YP_009219403.1 NC_029022_p37 terminase large subunit phrog_38 terminase large subunit head and packaging 1 17669 18913
YP_009219421.1 NC_029022_p55 xkdN-like protein phrog_389 tail protein XkdN-like tail 1 28433 28843
YP_009219382.1 NC_029022_p16 replisome organizer phrog_10469 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 8120 9013
YP_009219406.1 NC_029022_p40 hypothetical protein singleton unknown function unknown function 1 22003 22335
YP_009219409.1 NC_029022_p43 minor structural protein phrog_194 head scaffolding protein head and packaging 1 22864 23478
YP_009219415.1 NC_029022_p49 hypothetical protein singleton unknown function unknown function -1 25840 26001
YP_009219372.1 NC_029022_p6 Cro/CI family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 3618 4085
YP_009219437.1 NC_029022_p71 XhlA hemolysin singleton unknown function unknown function 1 41462 41779
YP_009219398.1 NC_029022_p32 hypothetical protein phrog_3928 unknown function unknown function 1 15871 16047
YP_009219439.1 NC_029022_p73 glucosaminidase /N-acetylmuramoyl-L-alanine amidase phrog_10967 endolysin lysis 1 42061 42861
YP_009219399.1 NC_029022_p33 hypothetical protein phrog_18632 unknown function unknown function 1 16279 16521
YP_009219389.1 NC_029022_p23 hypothetical protein singleton unknown function unknown function 1 11868 11981
YP_009219404.1 NC_029022_p38 SPP1 family portal protein phrog_64 portal protein head and packaging 1 18923 20329
YP_009219383.1 NC_029022_p17 hypothetical protein phrog_4601 unknown function unknown function 1 9018 9278
YP_009219438.1 NC_029022_p72 holin phrog_1129 holin lysis 1 41791 42060
YP_009219368.1 NC_029022_p2 hypothetical protein phrog_15901 unknown function unknown function -1 1568 1852
YP_009219441.1 NC_029022_p75 hypothetical protein phrog_18087 unknown function unknown function 1 44094 44462
YP_009219424.1 NC_029022_p58 tail-tape measure protein phrog_1068 tail length tape measure protein tail 1 30254 32257
YP_009219432.1 NC_029022_p66 hypothetical protein phrog_1382 unknown function unknown function 1 37620 37817
YP_009219377.1 NC_029022_p11 hypothetical protein phrog_7199 RNA polymerase DNA, RNA and nucleotide metabolism 1 6125 6424