Genomic map of Staphylococcus phage IME-SA4 (NC_029025)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029025
Definition
Staphylococcus phage IME-SA4, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41843
Host Name
Staphylococcus haemolyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
33.98
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009219644.1 NC_029025_p16 minor protein phrog_1786 minor head protein head and packaging 1 15540 18668
YP_009219678.1 NC_029025_p50 DNA methylase phrog_116 DNA methyltransferase other 1 36469 37749
YP_009219649.1 NC_029025_p21 holin phrog_1299 holin lysis 1 21594 21893
YP_009219682.1 NC_029025_p54 hypothetical protein phrog_98 unknown function unknown function 1 38768 39154
YP_009219648.1 NC_029025_p20 hypothetical protein phrog_2990 unknown function unknown function 1 21147 21545
YP_009219667.1 NC_029025_p39 DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 31706 32434
YP_009219659.1 NC_029025_p31 hypothetical protein phrog_2211 unknown function unknown function -1 28532 28855
YP_009219676.1 NC_029025_p48 hypothetical protein phrog_13370 unknown function unknown function 1 36041 36223
YP_009219672.1 NC_029025_p44 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 34470 34886
YP_009219671.1 NC_029025_p43 hypothetical protein phrog_433 unknown function unknown function 1 34217 34459
YP_009219653.1 NC_029025_p25 integrase phrog_1 integrase integration and excision -1 24879 25904
YP_009219630.1 NC_029025_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 515 2266
YP_009219680.1 NC_029025_p52 HNH endonuclease phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37928 38374
YP_009219643.1 NC_029025_p15 tail protein phrog_202 distal tail protein Dit tail 1 14031 15524
YP_009219642.1 NC_029025_p14 tail length tape measure protein phrog_167 tail length tape measure protein tail 1 8633 14020
YP_009219647.1 NC_029025_p19 hypothetical protein phrog_2968 tail protein tail 1 20744 21163
YP_009219656.1 NC_029025_p28 DNA-binding protein singleton unknown function unknown function 1 27288 27524
YP_009219633.1 NC_029025_p5 prohead protease phrog_80 head maturation protease head and packaging 1 3684 4244
YP_009219673.1 NC_029025_p45 hypothetical protein phrog_467 unknown function unknown function 1 34873 35304
YP_009219651.1 NC_029025_p23 hypothetical protein phrog_27385 unknown function unknown function 1 23801 24016
YP_009219635.1 NC_029025_p7 hypothetical protein phrog_933 unknown function unknown function 1 5610 5786
YP_009219655.1 NC_029025_p27 transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 26493 27209
YP_009219663.1 NC_029025_p35 hypothetical protein phrog_946 unknown function unknown function 1 29717 29974
YP_009219668.1 NC_029025_p40 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 32434 32793
YP_009219685.1 NC_029025_p57 hypothetical protein phrog_9792 unknown function unknown function 1 39984 40202
YP_009219689.1 NC_029025_p61 transcriptional regulator phrog_36 transcriptional regulator transcription regulation 1 40797 41243
YP_009219632.1 NC_029025_p4 portal protein phrog_12 portal protein head and packaging 1 2456 3703
YP_009219664.1 NC_029025_p36 single-stranded DNA-binding protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 29967 30617
YP_009219675.1 NC_029025_p47 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 35476 36036
YP_009219645.1 NC_029025_p17 hypothetical protein phrog_1399 unknown function unknown function 1 20235 20390
YP_009219688.1 NC_029025_p60 hypothetical protein phrog_386 unknown function unknown function 1 40595 40783
YP_009219636.1 NC_029025_p8 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5795 6118
YP_009219679.1 NC_029025_p51 hypothetical protein phrog_3683 unknown function unknown function 1 37746 37931
YP_009219637.1 NC_029025_p9 head-tail adaptor phrog_25 head closure Hc1 connector 1 6088 6411
YP_009219677.1 NC_029025_p49 hypothetical protein phrog_236 nucleotide kinase other 1 36230 36472
YP_009219684.1 NC_029025_p56 dUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 39410 39832
YP_009219650.1 NC_029025_p22 hypothetical protein phrog_635 endolysin lysis 1 21893 23602
YP_009219686.1 NC_029025_p58 hypothetical protein singleton unknown function unknown function 1 40202 40429
YP_009219661.1 NC_029025_p33 hypothetical protein phrog_369 unknown function unknown function 1 29236 29409
YP_009219638.1 NC_029025_p10 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 6411 6836
YP_009219666.1 NC_029025_p38 hypothetical protein phrog_398 unknown function unknown function 1 31038 31721
YP_009219681.1 NC_029025_p53 hypothetical protein phrog_9246 unknown function unknown function 1 38355 38606
YP_009219674.1 NC_029025_p46 hypothetical protein phrog_36810 unknown function unknown function 1 35292 35471
YP_009219641.1 NC_029025_p13 hypothetical protein phrog_27947 unknown function unknown function 1 7893 8429
YP_009219640.1 NC_029025_p12 major tail protein phrog_88 major tail protein tail 1 7231 7821
YP_009219634.1 NC_029025_p6 capsid protein phrog_10 major head protein head and packaging 1 4294 5595
YP_009219629.1 NC_029025_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 52 522
YP_009219683.1 NC_029025_p55 hypothetical protein singleton unknown function unknown function 1 39155 39409
YP_009219654.1 NC_029025_p26 hypothetical protein phrog_2700 unknown function unknown function -1 25963 26478
YP_009219665.1 NC_029025_p37 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 30610 31023
YP_009219652.1 NC_029025_p24 membrane protein phrog_3996 membrane protein moron, auxiliary metabolic gene and host takeover 1 24006 24461
YP_009219639.1 NC_029025_p11 hypothetical protein phrog_78 tail terminator connector 1 6829 7224
YP_009219669.1 NC_029025_p41 helicase DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 32786 34021
YP_009219687.1 NC_029025_p59 transcriptional regulator phrog_152 RinB-like transcriptional activator transcription regulation 1 40435 40593
YP_009219657.1 NC_029025_p29 oxidoreductase phrog_63 anti-repressor Ant transcription regulation 1 27629 28396
YP_009219660.1 NC_029025_p32 hypothetical protein phrog_823 unknown function unknown function 1 28919 29239
YP_009219662.1 NC_029025_p34 hypothetical protein phrog_23956 unknown function unknown function 1 29491 29742
YP_009219690.1 NC_029025_p62 HNH endonuclease protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41431 41778
YP_009219658.1 NC_029025_p30 hypothetical protein phrog_16149 unknown function unknown function 1 28409 28549
YP_009219670.1 NC_029025_p42 hypothetical protein phrog_3161 unknown function unknown function 1 34018 34242
YP_009219631.1 NC_029025_p3 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2280 2456
YP_009219646.1 NC_029025_p18 hypothetical protein phrog_1747 unknown function unknown function 1 20433 20732