| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029025 |
Definition |
Staphylococcus phage IME-SA4, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41843 |
Host Name |
Staphylococcus haemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
33.98 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009219644.1 | NC_029025_p16 | minor protein | phrog_1786 | minor head protein | head and packaging | 1 | 15540 | 18668 |
| YP_009219678.1 | NC_029025_p50 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 36469 | 37749 |
| YP_009219649.1 | NC_029025_p21 | holin | phrog_1299 | holin | lysis | 1 | 21594 | 21893 |
| YP_009219682.1 | NC_029025_p54 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 38768 | 39154 |
| YP_009219648.1 | NC_029025_p20 | hypothetical protein | phrog_2990 | unknown function | unknown function | 1 | 21147 | 21545 |
| YP_009219667.1 | NC_029025_p39 | DnaD | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31706 | 32434 |
| YP_009219659.1 | NC_029025_p31 | hypothetical protein | phrog_2211 | unknown function | unknown function | -1 | 28532 | 28855 |
| YP_009219676.1 | NC_029025_p48 | hypothetical protein | phrog_13370 | unknown function | unknown function | 1 | 36041 | 36223 |
| YP_009219672.1 | NC_029025_p44 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34470 | 34886 |
| YP_009219671.1 | NC_029025_p43 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 34217 | 34459 |
| YP_009219653.1 | NC_029025_p25 | integrase | phrog_1 | integrase | integration and excision | -1 | 24879 | 25904 |
| YP_009219630.1 | NC_029025_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 515 | 2266 |
| YP_009219680.1 | NC_029025_p52 | HNH endonuclease | phrog_1271 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37928 | 38374 |
| YP_009219643.1 | NC_029025_p15 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 14031 | 15524 |
| YP_009219642.1 | NC_029025_p14 | tail length tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 8633 | 14020 |
| YP_009219647.1 | NC_029025_p19 | hypothetical protein | phrog_2968 | tail protein | tail | 1 | 20744 | 21163 |
| YP_009219656.1 | NC_029025_p28 | DNA-binding protein | singleton | unknown function | unknown function | 1 | 27288 | 27524 |
| YP_009219633.1 | NC_029025_p5 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 3684 | 4244 |
| YP_009219673.1 | NC_029025_p45 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 34873 | 35304 |
| YP_009219651.1 | NC_029025_p23 | hypothetical protein | phrog_27385 | unknown function | unknown function | 1 | 23801 | 24016 |
| YP_009219635.1 | NC_029025_p7 | hypothetical protein | phrog_933 | unknown function | unknown function | 1 | 5610 | 5786 |
| YP_009219655.1 | NC_029025_p27 | transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 26493 | 27209 |
| YP_009219663.1 | NC_029025_p35 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 29717 | 29974 |
| YP_009219668.1 | NC_029025_p40 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 32434 | 32793 |
| YP_009219685.1 | NC_029025_p57 | hypothetical protein | phrog_9792 | unknown function | unknown function | 1 | 39984 | 40202 |
| YP_009219689.1 | NC_029025_p61 | transcriptional regulator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 40797 | 41243 |
| YP_009219632.1 | NC_029025_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2456 | 3703 |
| YP_009219664.1 | NC_029025_p36 | single-stranded DNA-binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 29967 | 30617 |
| YP_009219675.1 | NC_029025_p47 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 35476 | 36036 |
| YP_009219645.1 | NC_029025_p17 | hypothetical protein | phrog_1399 | unknown function | unknown function | 1 | 20235 | 20390 |
| YP_009219688.1 | NC_029025_p60 | hypothetical protein | phrog_386 | unknown function | unknown function | 1 | 40595 | 40783 |
| YP_009219636.1 | NC_029025_p8 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5795 | 6118 |
| YP_009219679.1 | NC_029025_p51 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 37746 | 37931 |
| YP_009219637.1 | NC_029025_p9 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6088 | 6411 |
| YP_009219677.1 | NC_029025_p49 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 36230 | 36472 |
| YP_009219684.1 | NC_029025_p56 | dUTP pyrophosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 39410 | 39832 |
| YP_009219650.1 | NC_029025_p22 | hypothetical protein | phrog_635 | endolysin | lysis | 1 | 21893 | 23602 |
| YP_009219686.1 | NC_029025_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40202 | 40429 |
| YP_009219661.1 | NC_029025_p33 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 29236 | 29409 |
| YP_009219638.1 | NC_029025_p10 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6411 | 6836 |
| YP_009219666.1 | NC_029025_p38 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 31038 | 31721 |
| YP_009219681.1 | NC_029025_p53 | hypothetical protein | phrog_9246 | unknown function | unknown function | 1 | 38355 | 38606 |
| YP_009219674.1 | NC_029025_p46 | hypothetical protein | phrog_36810 | unknown function | unknown function | 1 | 35292 | 35471 |
| YP_009219641.1 | NC_029025_p13 | hypothetical protein | phrog_27947 | unknown function | unknown function | 1 | 7893 | 8429 |
| YP_009219640.1 | NC_029025_p12 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7231 | 7821 |
| YP_009219634.1 | NC_029025_p6 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4294 | 5595 |
| YP_009219629.1 | NC_029025_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 52 | 522 |
| YP_009219683.1 | NC_029025_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39155 | 39409 |
| YP_009219654.1 | NC_029025_p26 | hypothetical protein | phrog_2700 | unknown function | unknown function | -1 | 25963 | 26478 |
| YP_009219665.1 | NC_029025_p37 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30610 | 31023 |
| YP_009219652.1 | NC_029025_p24 | membrane protein | phrog_3996 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 24006 | 24461 |
| YP_009219639.1 | NC_029025_p11 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6829 | 7224 |
| YP_009219669.1 | NC_029025_p41 | helicase DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 32786 | 34021 |
| YP_009219687.1 | NC_029025_p59 | transcriptional regulator | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 40435 | 40593 |
| YP_009219657.1 | NC_029025_p29 | oxidoreductase | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 27629 | 28396 |
| YP_009219660.1 | NC_029025_p32 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 28919 | 29239 |
| YP_009219662.1 | NC_029025_p34 | hypothetical protein | phrog_23956 | unknown function | unknown function | 1 | 29491 | 29742 |
| YP_009219690.1 | NC_029025_p62 | HNH endonuclease protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41431 | 41778 |
| YP_009219658.1 | NC_029025_p30 | hypothetical protein | phrog_16149 | unknown function | unknown function | 1 | 28409 | 28549 |
| YP_009219670.1 | NC_029025_p42 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 34018 | 34242 |
| YP_009219631.1 | NC_029025_p3 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2280 | 2456 |
| YP_009219646.1 | NC_029025_p18 | hypothetical protein | phrog_1747 | unknown function | unknown function | 1 | 20433 | 20732 |