| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029028 |
Definition |
Enterobacteria phage JenP1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nonagvirus. |
DB of origin |
REFSEQ |
Length |
60754 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
43.23 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009220029.1 | NC_029028_p59 | hypothetical protein | phrog_17131 | unknown function | unknown function | 1 | 46087 | 46317 |
| YP_009219988.1 | NC_029028_p18 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 15136 | 15720 |
| YP_009220053.1 | NC_029028_p83 | hypothetical protein | phrog_12090 | unknown function | unknown function | 1 | 58613 | 58804 |
| YP_009220004.1 | NC_029028_p34 | GTP cyclohydrolase I / queuosine biosynthesis protein FolE | phrog_2197 | GTP cyclohydrolase | other | -1 | 29960 | 30559 |
| YP_009219972.1 | NC_029028_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 521 | 2119 |
| YP_009219993.1 | NC_029028_p23 | tail fiber protein | phrog_1419 | tail protein | tail | 1 | 19841 | 21952 |
| YP_009220039.1 | NC_029028_p69 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52740 | 53213 |
| YP_009219998.1 | NC_029028_p28 | hypothetical protein | phrog_8329 | unknown function | unknown function | 1 | 24600 | 25148 |
| YP_009219996.1 | NC_029028_p26 | hypothetical protein | phrog_9288 | unknown function | unknown function | 1 | 23445 | 24152 |
| YP_009220045.1 | NC_029028_p75 | hypothetical protein | phrog_13865 | unknown function | unknown function | -1 | 54777 | 55082 |
| YP_009219995.1 | NC_029028_p25 | endosialidase-like protein | phrog_4563 | tail fiber protein | tail | 1 | 22237 | 23292 |
| YP_009219994.1 | NC_029028_p24 | hypothetical protein | phrog_1361 | unknown function | unknown function | 1 | 21949 | 22227 |
| YP_009220019.1 | NC_029028_p49 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | -1 | 42918 | 43442 |
| YP_009219991.1 | NC_029028_p21 | hypothetical protein | phrog_425 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | -1 | 18790 | 19404 |
| YP_009220042.1 | NC_029028_p72 | hypothetical protein | phrog_3199 | unknown function | unknown function | -1 | 53706 | 53951 |
| YP_009220011.1 | NC_029028_p41 | hypothetical protein | phrog_24889 | unknown function | unknown function | -1 | 35873 | 36139 |
| YP_009219973.1 | NC_029028_p3 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 2132 | 3658 |
| YP_009219990.1 | NC_029028_p20 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 16131 | 18755 |
| YP_009220026.1 | NC_029028_p56 | hypothetical protein | phrog_35106 | unknown function | unknown function | -1 | 45237 | 45458 |
| YP_009220025.1 | NC_029028_p55 | hypothetical protein | phrog_18974 | unknown function | unknown function | -1 | 44995 | 45219 |
| YP_009220033.1 | NC_029028_p63 | hypothetical protein | phrog_5321 | unknown function | unknown function | -1 | 49645 | 49914 |
| YP_009220030.1 | NC_029028_p60 | DNA primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 46348 | 48897 |
| YP_009220010.1 | NC_029028_p40 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 35149 | 35871 |
| YP_009219982.1 | NC_029028_p12 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 8779 | 9246 |
| YP_009220017.1 | NC_029028_p47 | RNAse H | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 41826 | 42416 |
| YP_009220041.1 | NC_029028_p71 | hypothetical protein | phrog_18706 | unknown function | unknown function | -1 | 53531 | 53695 |
| YP_009220023.1 | NC_029028_p53 | hypothetical protein | phrog_11457 | unknown function | unknown function | -1 | 44511 | 44690 |
| YP_009219999.1 | NC_029028_p29 | hypothetical protein | phrog_7239 | unknown function | unknown function | 1 | 25145 | 25414 |
| YP_009219981.1 | NC_029028_p11 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 8363 | 8782 |
| YP_009220018.1 | NC_029028_p48 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 42417 | 42842 |
| YP_009220056.1 | NC_029028_p86 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 59630 | 60064 |
| YP_009220036.1 | NC_029028_p66 | hypothetical protein | phrog_17615 | unknown function | unknown function | -1 | 50558 | 50908 |
| YP_009220021.1 | NC_029028_p51 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 43591 | 44052 |
| YP_009219983.1 | NC_029028_p13 | phage tail subunit | phrog_290 | minor tail protein | tail | 1 | 9249 | 10430 |
| YP_009219985.1 | NC_029028_p15 | hypothetical protein | phrog_4966 | unknown function | unknown function | 1 | 10944 | 11282 |
| YP_009219971.1 | NC_029028_p1 | terminase small subunit | phrog_5334 | terminase small subunit | head and packaging | 1 | 1 | 552 |
| YP_009220028.1 | NC_029028_p58 | hypothetical protein | phrog_17339 | protease | other | -1 | 45710 | 45988 |
| YP_009220031.1 | NC_029028_p61 | hypothetical protein | phrog_19703 | unknown function | unknown function | -1 | 48907 | 49143 |
| YP_009220022.1 | NC_029028_p52 | hypothetical protein | phrog_20894 | unknown function | unknown function | -1 | 44239 | 44514 |
| YP_009219987.1 | NC_029028_p17 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 14546 | 15136 |
| YP_009220046.1 | NC_029028_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55214 | 55522 |
| YP_009219984.1 | NC_029028_p14 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 10471 | 10899 |
| YP_009220009.1 | NC_029028_p39 | hypothetical protein | phrog_11298 | unknown function | unknown function | -1 | 34228 | 35052 |
| YP_009220032.1 | NC_029028_p62 | hypothetical protein | phrog_17122 | unknown function | unknown function | -1 | 49217 | 49630 |
| YP_009220034.1 | NC_029028_p64 | hypothetical protein | phrog_18528 | unknown function | unknown function | -1 | 49917 | 50132 |
| YP_009220050.1 | NC_029028_p80 | hypothetical protein | phrog_17085 | unknown function | unknown function | 1 | 57498 | 57860 |
| YP_009220020.1 | NC_029028_p50 | hypothetical protein | phrog_1312 | unknown function | unknown function | -1 | 43435 | 43578 |
| YP_009220012.1 | NC_029028_p42 | type I restriction-modification system, restriction subunit R | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 36120 | 38123 |
| YP_009220047.1 | NC_029028_p77 | hypothetical protein | phrog_17838 | unknown function | unknown function | 1 | 56351 | 56713 |
| YP_009220013.1 | NC_029028_p43 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 38124 | 39074 |
| YP_009220027.1 | NC_029028_p57 | hypothetical protein | phrog_9346 | unknown function | unknown function | -1 | 45495 | 45692 |
| YP_009220057.1 | NC_029028_p87 | hypothetical protein | phrog_16688 | unknown function | unknown function | 1 | 60389 | 60625 |
| YP_009220001.1 | NC_029028_p31 | hypothetical protein | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 27455 | 28447 |
| YP_009219986.1 | NC_029028_p16 | tail length tape-measure protein 1 | phrog_339 | tail length tape measure protein | tail | 1 | 11282 | 14542 |
| YP_009220000.1 | NC_029028_p30 | DNA polymerase B region | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 25485 | 27458 |
| YP_009220051.1 | NC_029028_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57829 | 58122 |
| YP_009220008.1 | NC_029028_p38 | queuosine Biosynthesis QueE Radical SAM | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 33395 | 34159 |
| YP_009220002.1 | NC_029028_p32 | hypothetical protein | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 28456 | 29409 |
| YP_009219976.1 | NC_029028_p6 | hypothetical protein | phrog_18016 | unknown function | unknown function | 1 | 5968 | 6402 |
| YP_009220014.1 | NC_029028_p44 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39137 | 40084 |
| YP_009219979.1 | NC_029028_p9 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 7489 | 7992 |
| YP_009220037.1 | NC_029028_p67 | hypothetical protein | phrog_16944 | unknown function | unknown function | -1 | 50908 | 51177 |
| YP_009220007.1 | NC_029028_p37 | hypothetical protein | phrog_18443 | unknown function | unknown function | -1 | 32521 | 33282 |
| YP_009220024.1 | NC_029028_p54 | hypothetical protein | phrog_2993 | unknown function | unknown function | -1 | 44687 | 44995 |
| YP_009220006.1 | NC_029028_p36 | glutamine amidotransferases class-II (GATase) / queuosine biosynthesis QueC ATPase | phrog_10428 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 31104 | 32519 |
| YP_009220048.1 | NC_029028_p78 | hypothetical protein | phrog_21152 | unknown function | unknown function | 1 | 56716 | 57054 |
| YP_009220016.1 | NC_029028_p46 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 40895 | 41839 |
| YP_009220040.1 | NC_029028_p70 | hypothetical protein | phrog_3199 | unknown function | unknown function | -1 | 53214 | 53462 |
| YP_009220003.1 | NC_029028_p33 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 29402 | 29890 |
| YP_009219974.1 | NC_029028_p4 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 3778 | 4668 |
| YP_009220015.1 | NC_029028_p45 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 40084 | 40830 |
| YP_009220049.1 | NC_029028_p79 | hypothetical protein | phrog_4049 | unknown function | unknown function | 1 | 57054 | 57494 |
| YP_009219980.1 | NC_029028_p10 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 7989 | 8363 |
| YP_009219989.1 | NC_029028_p19 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 15713 | 16129 |
| YP_009220054.1 | NC_029028_p84 | hypothetical protein | phrog_19774 | unknown function | unknown function | 1 | 58801 | 59025 |
| YP_009220038.1 | NC_029028_p68 | hypothetical protein | phrog_18014 | unknown function | unknown function | -1 | 51179 | 51799 |
| YP_009219975.1 | NC_029028_p5 | capsid protein | phrog_247 | major head protein | head and packaging | 1 | 4807 | 5910 |
| YP_009219978.1 | NC_029028_p8 | hypothetical protein | phrog_17875 | unknown function | unknown function | 1 | 7152 | 7481 |
| YP_009220035.1 | NC_029028_p65 | hypothetical protein | phrog_1972 | unknown function | unknown function | -1 | 50125 | 50568 |
| YP_009220052.1 | NC_029028_p82 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 58122 | 58616 |
| YP_009220044.1 | NC_029028_p74 | hypothetical protein | phrog_17772 | unknown function | unknown function | -1 | 54221 | 54700 |
| YP_009219997.1 | NC_029028_p27 | hypothetical protein | phrog_9157 | unknown function | unknown function | 1 | 24218 | 24583 |
| YP_009219977.1 | NC_029028_p7 | hypothetical protein | phrog_10966 | unknown function | unknown function | 1 | 6475 | 7143 |
| YP_009220043.1 | NC_029028_p73 | hypothetical protein | phrog_5461 | unknown function | unknown function | -1 | 53957 | 54142 |
| YP_009220005.1 | NC_029028_p35 | 6-carboxytetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 30586 | 31101 |
| YP_009219992.1 | NC_029028_p22 | hypothetical protein | phrog_557 | outer membrane protein | other | -1 | 19407 | 19688 |
| YP_009220055.1 | NC_029028_p85 | lysin | phrog_312 | Rz-like spanin | lysis | 1 | 59010 | 59507 |