| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029033 |
Definition |
Achromobacter phage phiAxp-1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
45045 |
Host Name |
Achromobacter xylosoxidans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
64 |
%GC |
56.01 |
Number of singletons |
26 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009220326.1 | NC_029033_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13042 | 13254 |
| YP_009220362.1 | NC_029033_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41325 | 41516 |
| YP_009220360.1 | NC_029033_p59 | PF09327 domain protein | phrog_31 | central tail fiber J | tail | 1 | 36933 | 40928 |
| YP_009220364.1 | NC_029033_p63 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 43680 | 44720 |
| YP_009220314.1 | NC_029033_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9304 | 9453 |
| YP_009220352.1 | NC_029033_p51 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 29216 | 29494 |
| YP_009220328.1 | NC_029033_p27 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 13572 | 13781 |
| YP_009220354.1 | NC_029033_p53 | tail tape measure | phrog_3336 | tail length tape measure protein | tail | 1 | 29939 | 33073 |
| YP_009220334.1 | NC_029033_p33 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 15352 | 15807 |
| YP_009220350.1 | NC_029033_p49 | major tail tube protein | phrog_290 | minor tail protein | tail | 1 | 27010 | 28644 |
| YP_009220308.1 | NC_029033_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4623 | 4838 |
| YP_009220342.1 | NC_029033_p41 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 20718 | 22319 |
| YP_009220311.1 | NC_029033_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8051 | 8779 |
| YP_009220319.1 | NC_029033_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11162 | 11461 |
| YP_009220347.1 | NC_029033_p46 | virion protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 25623 | 26144 |
| YP_009220309.1 | NC_029033_p8 | replicative primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 4822 | 7245 |
| YP_009220305.1 | NC_029033_p4 | recombinase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 2726 | 3406 |
| YP_009220330.1 | NC_029033_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14375 | 14695 |
| YP_009220316.1 | NC_029033_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9677 | 10063 |
| YP_009220365.1 | NC_029033_p64 | hypothetical protein | phrog_11184 | unknown function | unknown function | -1 | 44704 | 45045 |
| YP_009220313.1 | NC_029033_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9050 | 9307 |
| YP_009220338.1 | NC_029033_p37 | hypothetical protein | phrog_315 | endolysin | lysis | 1 | 17707 | 18246 |
| YP_009220358.1 | NC_029033_p57 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 36005 | 36544 |
| YP_009220344.1 | NC_029033_p43 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 23373 | 24101 |
| YP_009220318.1 | NC_029033_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10471 | 11160 |
| YP_009220310.1 | NC_029033_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7593 | 8054 |
| YP_009220317.1 | NC_029033_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10160 | 10390 |
| YP_009220307.1 | NC_029033_p6 | mazG pyrophosphatase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 3954 | 4496 |
| YP_009220353.1 | NC_029033_p52 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 29491 | 29934 |
| YP_009220320.1 | NC_029033_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11461 | 11901 |
| YP_009220341.1 | NC_029033_p40 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 19117 | 20703 |
| YP_009220355.1 | NC_029033_p54 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 33078 | 34382 |
| YP_009220312.1 | NC_029033_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8845 | 9045 |
| YP_009220329.1 | NC_029033_p28 | endonuclease | phrog_824 | unknown function | unknown function | 1 | 13785 | 14339 |
| YP_009220349.1 | NC_029033_p48 | minor tail protein | phrog_179 | tail terminator | connector | 1 | 26547 | 26999 |
| YP_009220348.1 | NC_029033_p47 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 26141 | 26539 |
| YP_009220302.1 | NC_029033_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9 | 266 |
| YP_009220327.1 | NC_029033_p26 | hypothetical protein | phrog_8898 | unknown function | unknown function | 1 | 13256 | 13579 |
| YP_009220335.1 | NC_029033_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15804 | 16184 |
| YP_009220303.1 | NC_029033_p2 | DNA/RNA helicase protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 250 | 1911 |
| YP_009220339.1 | NC_029033_p38 | hypothetical protein | phrog_1026 | Rz-like spanin | lysis | 1 | 18247 | 18507 |
| YP_009220351.1 | NC_029033_p50 | tail chaperonin protein | phrog_313 | Tail assembly chaperone | tail | 1 | 28731 | 29171 |
| YP_009220340.1 | NC_029033_p39 | hypothetical protein | phrog_5334 | terminase small subunit | head and packaging | 1 | 18681 | 19139 |
| YP_009220363.1 | NC_029033_p62 | DNA polymerase subunit | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 41560 | 43680 |
| YP_009220356.1 | NC_029033_p55 | hypothetical protein | phrog_5417 | unknown function | unknown function | 1 | 34387 | 34839 |
| YP_009220361.1 | NC_029033_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40925 | 41347 |
| YP_009220346.1 | NC_029033_p45 | hypothetical protein | phrog_9062 | unknown function | unknown function | 1 | 25187 | 25555 |
| YP_009220337.1 | NC_029033_p36 | hypothetical protein | phrog_26164 | unknown function | unknown function | 1 | 17087 | 17476 |
| YP_009220357.1 | NC_029033_p56 | hypothetical protein | phrog_863 | tail fiber assembly | tail | 1 | 34870 | 35967 |
| YP_009220323.1 | NC_029033_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12367 | 12765 |
| YP_009220324.1 | NC_029033_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12827 | 12946 |
| YP_009220343.1 | NC_029033_p42 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 22316 | 23350 |
| YP_009220322.1 | NC_029033_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12161 | 12370 |
| YP_009220333.1 | NC_029033_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15098 | 15355 |
| YP_009220321.1 | NC_029033_p20 | hypothetical protein | phrog_24619 | unknown function | unknown function | 1 | 11911 | 12168 |
| YP_009220336.1 | NC_029033_p35 | hypothetical protein | phrog_7597 | unknown function | unknown function | 1 | 16246 | 16920 |
| YP_009220332.1 | NC_029033_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14889 | 15101 |
| YP_009220359.1 | NC_029033_p58 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 36541 | 36936 |
| YP_009220325.1 | NC_029033_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12947 | 13039 |
| YP_009220315.1 | NC_029033_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9450 | 9680 |
| YP_009220331.1 | NC_029033_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14710 | 14892 |
| YP_009220306.1 | NC_029033_p5 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 3467 | 3910 |
| YP_009220345.1 | NC_029033_p44 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 24156 | 25133 |
| YP_009220304.1 | NC_029033_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1979 | 2659 |