Genomic map of Sinorhizobium phage phiLM21 (NC_029046)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029046
Definition
Sinorhizobium phage phiLM21, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
50827
Host Name
Sinorhizobium sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
60.66
Number of singletons
18
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009221501.1 NC_029046_p30 hypothetical protein singleton unknown function unknown function 1 16879 17073
YP_009221487.1 NC_029046_p16 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 9020 9559
YP_009221523.1 NC_029046_p52 tail collar domain phrog_158 major tail protein tail 1 32432 33169
YP_009221486.1 NC_029046_p15 hypothetical protein singleton unknown function unknown function -1 8362 8784
YP_009221483.1 NC_029046_p12 hypothetical protein singleton unknown function unknown function -1 7609 7875
YP_009221522.1 NC_029046_p51 tail terminator phrog_179 tail terminator connector 1 31943 32374
YP_009221518.1 NC_029046_p47 hypothetical protein phrog_829 unknown function unknown function 1 29756 29923
YP_009221472.1 NC_029046_p1 integrase phrog_1 integrase integration and excision -1 536 1678
YP_009221491.1 NC_029046_p20 Cro-like protein phrog_35 transcriptional repressor transcription regulation 1 11273 11503
YP_009221532.1 NC_029046_p61 tail fiber protein phrog_38233 tail fiber protein tail 1 41679 44345
YP_009221502.1 NC_029046_p31 DnaB replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 17070 18503
YP_009221490.1 NC_029046_p19 XRE family transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 10497 11180
YP_009221512.1 NC_029046_p41 hypothetical protein phrog_766 head decoration head and packaging 1 26621 27070
YP_009221475.1 NC_029046_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism -1 3129 3512
YP_009221529.1 NC_029046_p58 hypothetical protein phrog_2048 tail protein tail 1 38376 38978
YP_009221541.1 NC_029046_p70 hypothetical protein phrog_12188 unknown function unknown function 1 49135 49428
YP_009221516.1 NC_029046_p45 structural protein phrog_161 head closure Hc1 connector 1 29028 29390
YP_009221519.1 NC_029046_p48 hypothetical protein singleton unknown function unknown function 1 29920 30231
YP_009221508.1 NC_029046_p37 terminase small subunit phrog_51 terminase small subunit head and packaging 1 22088 22699
YP_009221500.1 NC_029046_p29 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 16589 16882
YP_009221496.1 NC_029046_p25 hypothetical protein phrog_1279 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 14209 15033
YP_009221478.1 NC_029046_p7 NinB family protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism -1 4448 4861
YP_009221477.1 NC_029046_p6 hypothetical protein phrog_4657 unknown function unknown function -1 3819 4451
YP_009221479.1 NC_029046_p8 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 4864 5529
YP_009221528.1 NC_029046_p57 hypothetical protein phrog_12948 tail protein tail 1 37612 38376
YP_009221497.1 NC_029046_p26 hypothetical protein phrog_4899 unknown function unknown function 1 15033 15560
YP_009221537.1 NC_029046_p66 hypothetical protein phrog_19660 unknown function unknown function 1 47377 47628
YP_009221499.1 NC_029046_p28 hypothetical protein singleton unknown function unknown function 1 16383 16586
YP_009221495.1 NC_029046_p24 hypothetical protein singleton unknown function unknown function 1 13817 14212
YP_009221503.1 NC_029046_p32 hypothetical protein phrog_9327 primosomal protein DNA, RNA and nucleotide metabolism 1 18500 19408
YP_009221505.1 NC_029046_p34 NusG-like transcription anti-terminator phrog_25909 transcription antiterminator transcription regulation 1 19709 20389
YP_009221488.1 NC_029046_p17 hypothetical protein singleton unknown function unknown function -1 9556 9870
YP_009221539.1 NC_029046_p68 hypothetical protein singleton unknown function unknown function -1 48083 48349
YP_009221498.1 NC_029046_p27 methyltransferase phrog_799 DNA methyltransferase other 1 15739 16386
YP_009221494.1 NC_029046_p23 hypothetical protein singleton unknown function unknown function 1 13629 13871
YP_009221513.1 NC_029046_p42 coat protein phrog_771 virion structural protein head and packaging 1 27081 28124
YP_009221517.1 NC_029046_p46 hypothetical protein singleton unknown function unknown function -1 29394 29687
YP_009221540.1 NC_029046_p69 hypothetical protein phrog_34844 unknown function unknown function 1 48931 49122
YP_009221542.1 NC_029046_p71 hypothetical protein phrog_37486 unknown function unknown function -1 49430 49714
YP_009221525.1 NC_029046_p54 hypothetical protein phrog_35160 unknown function unknown function 1 33639 33935
YP_009221489.1 NC_029046_p18 hypothetical protein phrog_914 unknown function unknown function -1 10072 10473
YP_009221526.1 NC_029046_p55 hypothetical protein singleton unknown function unknown function 1 34034 34723
YP_009221484.1 NC_029046_p13 hypothetical protein singleton unknown function unknown function -1 7875 8153
YP_009221474.1 NC_029046_p3 hypothetical protein phrog_4826 unknown function unknown function -1 2377 3132
YP_009221536.1 NC_029046_p65 hypothetical protein singleton unknown function unknown function 1 47202 47486
YP_009221524.1 NC_029046_p53 hypothetical protein phrog_313 Tail assembly chaperone tail 1 33169 33585
YP_009221511.1 NC_029046_p40 hypothetical protein phrog_760 unknown function unknown function 1 25499 26617
YP_009221473.1 NC_029046_p2 excisionase phrog_66 excisionase and transcriptional regulator integration and excision -1 1555 1869
YP_009221480.1 NC_029046_p9 ERF superfamily protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 5522 6340
YP_009221538.1 NC_029046_p67 membrane protein phrog_736 unknown function unknown function 1 47680 48048
YP_009221510.1 NC_029046_p39 portal protein phrog_146 portal protein head and packaging 1 24114 25493
YP_009221535.1 NC_029046_p64 chitinase-like protein phrog_14712 chitinase moron, auxiliary metabolic gene and host takeover 1 46228 47202
YP_009221520.1 NC_029046_p49 head morphogenesis protein phrog_3517 head morphogenesis head and packaging 1 30292 31290
YP_009221481.1 NC_029046_p10 hypothetical protein phrog_1376 unknown function unknown function -1 6352 7374
YP_009221476.1 NC_029046_p5 hypothetical protein singleton unknown function unknown function -1 3496 3822
YP_009221493.1 NC_029046_p22 hypothetical protein singleton unknown function unknown function 1 12081 13139
YP_009221514.1 NC_029046_p43 hypothetical protein phrog_26087 unknown function unknown function 1 28183 28527
YP_009221507.1 NC_029046_p36 hypothetical protein phrog_6978 unknown function unknown function 1 21538 21789
YP_009221530.1 NC_029046_p59 hypothetical protein phrog_2134 unknown function unknown function 1 38986 39399
YP_009221482.1 NC_029046_p11 membrane protein phrog_35970 membrane protein moron, auxiliary metabolic gene and host takeover -1 7376 7612
YP_009221527.1 NC_029046_p56 tail tape measure protein phrog_19914 tail length tape measure protein tail 1 34787 37609
YP_009221534.1 NC_029046_p63 hypothetical protein singleton unknown function unknown function 1 45459 45689
YP_009221492.1 NC_029046_p21 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 11500 12084
YP_009221485.1 NC_029046_p14 hypothetical protein phrog_7033 unknown function unknown function -1 8153 8362
YP_009221531.1 NC_029046_p60 tail fiber protein phrog_5616 tail fiber protein tail 1 39396 41609
YP_009221509.1 NC_029046_p38 terminase large subunit phrog_2 terminase large subunit head and packaging 1 22666 24117
YP_009221504.1 NC_029046_p33 chromosomal replication initiator protein DnaA singleton unknown function unknown function 1 19398 19712
YP_009221521.1 NC_029046_p50 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 31290 31772
YP_009221515.1 NC_029046_p44 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 28534 29028
YP_009221543.1 NC_029046_p72 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 49750 50742
YP_009221506.1 NC_029046_p35 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 20477 21013
YP_009221533.1 NC_029046_p62 methyltransferase singleton unknown function unknown function -1 44395 45354