| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029046 |
Definition |
Sinorhizobium phage phiLM21, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
50827 |
Host Name |
Sinorhizobium sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
60.66 |
Number of singletons |
18 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009221501.1 | NC_029046_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16879 | 17073 |
| YP_009221487.1 | NC_029046_p16 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 9020 | 9559 |
| YP_009221523.1 | NC_029046_p52 | tail collar domain | phrog_158 | major tail protein | tail | 1 | 32432 | 33169 |
| YP_009221486.1 | NC_029046_p15 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8362 | 8784 |
| YP_009221483.1 | NC_029046_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7609 | 7875 |
| YP_009221522.1 | NC_029046_p51 | tail terminator | phrog_179 | tail terminator | connector | 1 | 31943 | 32374 |
| YP_009221518.1 | NC_029046_p47 | hypothetical protein | phrog_829 | unknown function | unknown function | 1 | 29756 | 29923 |
| YP_009221472.1 | NC_029046_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 536 | 1678 |
| YP_009221491.1 | NC_029046_p20 | Cro-like protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 11273 | 11503 |
| YP_009221532.1 | NC_029046_p61 | tail fiber protein | phrog_38233 | tail fiber protein | tail | 1 | 41679 | 44345 |
| YP_009221502.1 | NC_029046_p31 | DnaB replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 17070 | 18503 |
| YP_009221490.1 | NC_029046_p19 | XRE family transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 10497 | 11180 |
| YP_009221512.1 | NC_029046_p41 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 26621 | 27070 |
| YP_009221475.1 | NC_029046_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 3129 | 3512 |
| YP_009221529.1 | NC_029046_p58 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 38376 | 38978 |
| YP_009221541.1 | NC_029046_p70 | hypothetical protein | phrog_12188 | unknown function | unknown function | 1 | 49135 | 49428 |
| YP_009221516.1 | NC_029046_p45 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 29028 | 29390 |
| YP_009221519.1 | NC_029046_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29920 | 30231 |
| YP_009221508.1 | NC_029046_p37 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 22088 | 22699 |
| YP_009221500.1 | NC_029046_p29 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16589 | 16882 |
| YP_009221496.1 | NC_029046_p25 | hypothetical protein | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 14209 | 15033 |
| YP_009221478.1 | NC_029046_p7 | NinB family protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | -1 | 4448 | 4861 |
| YP_009221477.1 | NC_029046_p6 | hypothetical protein | phrog_4657 | unknown function | unknown function | -1 | 3819 | 4451 |
| YP_009221479.1 | NC_029046_p8 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 4864 | 5529 |
| YP_009221528.1 | NC_029046_p57 | hypothetical protein | phrog_12948 | tail protein | tail | 1 | 37612 | 38376 |
| YP_009221497.1 | NC_029046_p26 | hypothetical protein | phrog_4899 | unknown function | unknown function | 1 | 15033 | 15560 |
| YP_009221537.1 | NC_029046_p66 | hypothetical protein | phrog_19660 | unknown function | unknown function | 1 | 47377 | 47628 |
| YP_009221499.1 | NC_029046_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16383 | 16586 |
| YP_009221495.1 | NC_029046_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13817 | 14212 |
| YP_009221503.1 | NC_029046_p32 | hypothetical protein | phrog_9327 | primosomal protein | DNA, RNA and nucleotide metabolism | 1 | 18500 | 19408 |
| YP_009221505.1 | NC_029046_p34 | NusG-like transcription anti-terminator | phrog_25909 | transcription antiterminator | transcription regulation | 1 | 19709 | 20389 |
| YP_009221488.1 | NC_029046_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9556 | 9870 |
| YP_009221539.1 | NC_029046_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48083 | 48349 |
| YP_009221498.1 | NC_029046_p27 | methyltransferase | phrog_799 | DNA methyltransferase | other | 1 | 15739 | 16386 |
| YP_009221494.1 | NC_029046_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13629 | 13871 |
| YP_009221513.1 | NC_029046_p42 | coat protein | phrog_771 | virion structural protein | head and packaging | 1 | 27081 | 28124 |
| YP_009221517.1 | NC_029046_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29394 | 29687 |
| YP_009221540.1 | NC_029046_p69 | hypothetical protein | phrog_34844 | unknown function | unknown function | 1 | 48931 | 49122 |
| YP_009221542.1 | NC_029046_p71 | hypothetical protein | phrog_37486 | unknown function | unknown function | -1 | 49430 | 49714 |
| YP_009221525.1 | NC_029046_p54 | hypothetical protein | phrog_35160 | unknown function | unknown function | 1 | 33639 | 33935 |
| YP_009221489.1 | NC_029046_p18 | hypothetical protein | phrog_914 | unknown function | unknown function | -1 | 10072 | 10473 |
| YP_009221526.1 | NC_029046_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34034 | 34723 |
| YP_009221484.1 | NC_029046_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7875 | 8153 |
| YP_009221474.1 | NC_029046_p3 | hypothetical protein | phrog_4826 | unknown function | unknown function | -1 | 2377 | 3132 |
| YP_009221536.1 | NC_029046_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47202 | 47486 |
| YP_009221524.1 | NC_029046_p53 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 33169 | 33585 |
| YP_009221511.1 | NC_029046_p40 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 25499 | 26617 |
| YP_009221473.1 | NC_029046_p2 | excisionase | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 1555 | 1869 |
| YP_009221480.1 | NC_029046_p9 | ERF superfamily protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 5522 | 6340 |
| YP_009221538.1 | NC_029046_p67 | membrane protein | phrog_736 | unknown function | unknown function | 1 | 47680 | 48048 |
| YP_009221510.1 | NC_029046_p39 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 24114 | 25493 |
| YP_009221535.1 | NC_029046_p64 | chitinase-like protein | phrog_14712 | chitinase | moron, auxiliary metabolic gene and host takeover | 1 | 46228 | 47202 |
| YP_009221520.1 | NC_029046_p49 | head morphogenesis protein | phrog_3517 | head morphogenesis | head and packaging | 1 | 30292 | 31290 |
| YP_009221481.1 | NC_029046_p10 | hypothetical protein | phrog_1376 | unknown function | unknown function | -1 | 6352 | 7374 |
| YP_009221476.1 | NC_029046_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3496 | 3822 |
| YP_009221493.1 | NC_029046_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12081 | 13139 |
| YP_009221514.1 | NC_029046_p43 | hypothetical protein | phrog_26087 | unknown function | unknown function | 1 | 28183 | 28527 |
| YP_009221507.1 | NC_029046_p36 | hypothetical protein | phrog_6978 | unknown function | unknown function | 1 | 21538 | 21789 |
| YP_009221530.1 | NC_029046_p59 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 38986 | 39399 |
| YP_009221482.1 | NC_029046_p11 | membrane protein | phrog_35970 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 7376 | 7612 |
| YP_009221527.1 | NC_029046_p56 | tail tape measure protein | phrog_19914 | tail length tape measure protein | tail | 1 | 34787 | 37609 |
| YP_009221534.1 | NC_029046_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45459 | 45689 |
| YP_009221492.1 | NC_029046_p21 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11500 | 12084 |
| YP_009221485.1 | NC_029046_p14 | hypothetical protein | phrog_7033 | unknown function | unknown function | -1 | 8153 | 8362 |
| YP_009221531.1 | NC_029046_p60 | tail fiber protein | phrog_5616 | tail fiber protein | tail | 1 | 39396 | 41609 |
| YP_009221509.1 | NC_029046_p38 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 22666 | 24117 |
| YP_009221504.1 | NC_029046_p33 | chromosomal replication initiator protein DnaA | singleton | unknown function | unknown function | 1 | 19398 | 19712 |
| YP_009221521.1 | NC_029046_p50 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 31290 | 31772 |
| YP_009221515.1 | NC_029046_p44 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 28534 | 29028 |
| YP_009221543.1 | NC_029046_p72 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 49750 | 50742 |
| YP_009221506.1 | NC_029046_p35 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20477 | 21013 |
| YP_009221533.1 | NC_029046_p62 | methyltransferase | singleton | unknown function | unknown function | -1 | 44395 | 45354 |