| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029058 |
Definition |
Lactobacillus phage LfeInf, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; unclassified Herelleviridae. |
DB of origin |
REFSEQ |
Length |
106071 |
Host Name |
Lactobacillus fermentum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
124 |
%GC |
38.16 |
Number of singletons |
51 |
Number of paralogs |
8 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009222286.1 | NC_029058_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36119 | 36385 |
| YP_009222287.1 | NC_029058_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36378 | 36767 |
| YP_009222300.1 | NC_029058_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48421 | 48651 |
| YP_009222338.1 | NC_029058_p100 | hypothetical protein | phrog_5070 | unknown function | unknown function | 1 | 90533 | 91150 |
| YP_009222340.1 | NC_029058_p102 | DNA recombinase RecA | phrog_97 | UvsX-like recombinase | other | 1 | 91643 | 92902 |
| YP_009222277.1 | NC_029058_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31439 | 31768 |
| YP_009222328.1 | NC_029058_p90 | hypothetical protein | phrog_18861 | unknown function | unknown function | 1 | 84558 | 84911 |
| YP_009222243.1 | NC_029058_p5 | hypothetical protein | phrog_559 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 2780 | 3952 |
| YP_009222250.1 | NC_029058_p12 | hypothetical protein | phrog_34465 | unknown function | unknown function | -1 | 9890 | 10225 |
| YP_009222350.1 | NC_029058_p112 | hypothetical protein | phrog_2261 | unknown function | unknown function | 1 | 98429 | 98980 |
| YP_009222359.1 | NC_029058_p121 | hypothetical protein | singleton | unknown function | unknown function | 1 | 103460 | 103993 |
| YP_009222308.1 | NC_029058_p70 | tape measure protein | phrog_1047 | tail associated lysin | tail | 1 | 53023 | 56259 |
| YP_009222252.1 | NC_029058_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10571 | 10852 |
| YP_009222342.1 | NC_029058_p104 | hypothetical protein | phrog_1025 | RNA polymerase sigma factor | transcription regulation | 1 | 93329 | 94024 |
| YP_009222267.1 | NC_029058_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20788 | 21006 |
| YP_009222319.1 | NC_029058_p81 | hypothetical protein | phrog_7926 | helicase subunit of the DNA excision repair complex | DNA, RNA and nucleotide metabolism | 1 | 70885 | 71058 |
| YP_009222298.1 | NC_029058_p60 | prohead peptidase | phrog_1028 | head maturation protease | head and packaging | 1 | 46507 | 47367 |
| YP_009222292.1 | NC_029058_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39973 | 40524 |
| YP_009222276.1 | NC_029058_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30899 | 31420 |
| YP_009222288.1 | NC_029058_p50 | holin | phrog_2609 | holin | lysis | 1 | 36754 | 37197 |
| YP_009222278.1 | NC_029058_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32523 | 32675 |
| YP_009222316.1 | NC_029058_p78 | hypothetical protein | phrog_1394 | virion structural protein | head and packaging | 1 | 66603 | 67142 |
| YP_009222254.1 | NC_029058_p16 | Mg2+ transporter protein | phrog_26011 | unknown function | unknown function | 1 | 11438 | 12406 |
| YP_009222258.1 | NC_029058_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15829 | 16077 |
| YP_009222323.1 | NC_029058_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 77715 | 78440 |
| YP_009222315.1 | NC_029058_p77 | hypothetical protein | phrog_1160 | baseplate protein | tail | 1 | 64693 | 66591 |
| YP_009222263.1 | NC_029058_p25 | hypothetical protein | phrog_1494 | unknown function | unknown function | -1 | 19752 | 19952 |
| YP_009222240.1 | NC_029058_p2 | hypothetical protein | phrog_7964 | unknown function | unknown function | -1 | 1031 | 2032 |
| YP_009222251.1 | NC_029058_p13 | hypothetical protein | phrog_34465 | unknown function | unknown function | -1 | 10228 | 10557 |
| YP_009222280.1 | NC_029058_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33433 | 33603 |
| YP_009222256.1 | NC_029058_p18 | hypothetical protein | phrog_1015 | tail protein with lysin activity | tail | -1 | 12769 | 14796 |
| YP_009222271.1 | NC_029058_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25310 | 26059 |
| YP_009222284.1 | NC_029058_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35102 | 35260 |
| YP_009222242.1 | NC_029058_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2515 | 2763 |
| YP_009222245.1 | NC_029058_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4910 | 5059 |
| YP_009222310.1 | NC_029058_p72 | hypothetical protein | phrog_877 | unknown function | unknown function | 1 | 56661 | 61163 |
| YP_009222239.1 | NC_029058_p1 | hypothetical protein | phrog_29017 | unknown function | unknown function | 1 | 250 | 678 |
| YP_009222290.1 | NC_029058_p52 | hypothetical protein | phrog_21586 | unknown function | unknown function | 1 | 38907 | 39578 |
| YP_009222322.1 | NC_029058_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 77401 | 77634 |
| YP_009222314.1 | NC_029058_p76 | baseplate J family protein | phrog_6 | baseplate wedge subunit | tail | 1 | 63136 | 64692 |
| YP_009222273.1 | NC_029058_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26925 | 27149 |
| YP_009222270.1 | NC_029058_p32 | hypothetical protein | phrog_772 | tail fiber protein | tail | -1 | 23761 | 24693 |
| YP_009222329.1 | NC_029058_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 84904 | 85224 |
| YP_009222304.1 | NC_029058_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51297 | 51512 |
| YP_009222330.1 | NC_029058_p92 | hypothetical protein | phrog_22218 | unknown function | unknown function | 1 | 85227 | 85925 |
| YP_009222353.1 | NC_029058_p115 | hypothetical protein | singleton | unknown function | unknown function | 1 | 100311 | 100904 |
| YP_009222301.1 | NC_029058_p63 | hypothetical protein | phrog_1000 | unknown function | unknown function | -1 | 48655 | 49491 |
| YP_009222272.1 | NC_029058_p34 | DNA helicase | singleton | unknown function | unknown function | -1 | 26233 | 26775 |
| YP_009222318.1 | NC_029058_p80 | hypothetical protein | phrog_3267 | tail protein | tail | 1 | 69764 | 70885 |
| YP_009222355.1 | NC_029058_p117 | hypothetical protein | singleton | unknown function | unknown function | 1 | 102007 | 102192 |
| YP_009222248.1 | NC_029058_p10 | hypothetical protein | phrog_23792 | unknown function | unknown function | -1 | 9337 | 9591 |
| YP_009222347.1 | NC_029058_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 96754 | 97254 |
| YP_009222344.1 | NC_029058_p106 | hypothetical protein | singleton | unknown function | unknown function | 1 | 94510 | 94866 |
| YP_009222260.1 | NC_029058_p22 | hypothetical protein | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | -1 | 17900 | 19012 |
| YP_009222282.1 | NC_029058_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33850 | 34299 |
| YP_009222362.1 | NC_029058_p124 | hypothetical protein | phrog_29017 | unknown function | unknown function | 1 | 105504 | 105932 |
| YP_009222343.1 | NC_029058_p105 | hypothetical protein | phrog_5070 | unknown function | unknown function | 1 | 94106 | 94489 |
| YP_009222279.1 | NC_029058_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33262 | 33411 |
| YP_009222352.1 | NC_029058_p114 | hypothetical protein | phrog_1007 | unknown function | unknown function | 1 | 99593 | 100303 |
| YP_009222327.1 | NC_029058_p89 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 83507 | 84556 |
| YP_009222291.1 | NC_029058_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39599 | 39970 |
| YP_009222305.1 | NC_029058_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51520 | 51777 |
| YP_009222303.1 | NC_029058_p65 | hypothetical protein | phrog_1004 | virion structural protein | head and packaging | -1 | 50207 | 51181 |
| YP_009222351.1 | NC_029058_p113 | hypothetical protein | singleton | unknown function | unknown function | 1 | 98981 | 99334 |
| YP_009222283.1 | NC_029058_p45 | peptidoglycan-binding protein LysM | phrog_4602 | transglycosylase | other | 1 | 34452 | 35024 |
| YP_009222259.1 | NC_029058_p21 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 16074 | 17903 |
| YP_009222262.1 | NC_029058_p24 | hypothetical protein | phrog_32676 | unknown function | unknown function | -1 | 19462 | 19752 |
| YP_009222346.1 | NC_029058_p108 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 95250 | 96743 |
| YP_009222313.1 | NC_029058_p75 | GPW/gp25 family protein | phrog_975 | baseplate protein | tail | 1 | 62411 | 63124 |
| YP_009222281.1 | NC_029058_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33591 | 33833 |
| YP_009222360.1 | NC_029058_p122 | hypothetical protein | phrog_37096 | unknown function | unknown function | 1 | 104085 | 104453 |
| YP_009222320.1 | NC_029058_p82 | hypothetical protein | phrog_5499 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 71039 | 77122 |
| YP_009222335.1 | NC_029058_p97 | hypothetical protein | phrog_18678 | unknown function | unknown function | 1 | 88479 | 89657 |
| YP_009222269.1 | NC_029058_p31 | tail sheath protein | phrog_279 | tail sheath | tail | -1 | 21812 | 23680 |
| YP_009222294.1 | NC_029058_p56 | hypothetical protein | phrog_1063 | terminase small subunit | head and packaging | 1 | 40856 | 41269 |
| YP_009222275.1 | NC_029058_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30127 | 30264 |
| YP_009222249.1 | NC_029058_p11 | hypothetical protein | phrog_35931 | unknown function | unknown function | -1 | 9594 | 9884 |
| YP_009222246.1 | NC_029058_p8 | lysin | phrog_1047 | tail associated lysin | tail | 1 | 5179 | 8691 |
| YP_009222325.1 | NC_029058_p87 | endonuclease | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 79892 | 82885 |
| YP_009222357.1 | NC_029058_p119 | hypothetical protein | singleton | unknown function | unknown function | 1 | 102438 | 102881 |
| YP_009222285.1 | NC_029058_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35283 | 35723 |
| YP_009222297.1 | NC_029058_p59 | major capsid protein | phrog_752 | major head protein | head and packaging | 1 | 44909 | 46399 |
| YP_009222309.1 | NC_029058_p71 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 56272 | 56616 |
| YP_009222268.1 | NC_029058_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21231 | 21386 |
| YP_009222334.1 | NC_029058_p96 | hypothetical protein | singleton | unknown function | unknown function | 1 | 87802 | 88437 |
| YP_009222289.1 | NC_029058_p51 | lysin | phrog_291 | endolysin | lysis | 1 | 37286 | 38755 |
| YP_009222332.1 | NC_029058_p94 | hypothetical protein | phrog_1054 | unknown function | unknown function | 1 | 86655 | 87263 |
| YP_009222257.1 | NC_029058_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14808 | 15809 |
| YP_009222324.1 | NC_029058_p86 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 78422 | 79888 |
| YP_009222337.1 | NC_029058_p99 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 90267 | 90473 |
| YP_009222331.1 | NC_029058_p93 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 86005 | 86652 |
| YP_009222261.1 | NC_029058_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19030 | 19416 |
| YP_009222348.1 | NC_029058_p110 | hypothetical protein | phrog_1080 | unknown function | unknown function | 1 | 97244 | 97792 |
| YP_009222241.1 | NC_029058_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2164 | 2382 |
| YP_009222296.1 | NC_029058_p58 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 43108 | 44658 |
| YP_009222306.1 | NC_029058_p68 | tapemeasure chaperone protein | phrog_15939 | tail assembly chaperone | tail | 1 | 51778 | 52966 |
| YP_009222349.1 | NC_029058_p111 | hypothetical protein | phrog_984 | unknown function | unknown function | 1 | 97785 | 98432 |
| YP_009222302.1 | NC_029058_p64 | hypothetical protein | phrog_17976 | unknown function | unknown function | -1 | 49491 | 50204 |
| YP_009222326.1 | NC_029058_p88 | hypothetical protein | phrog_1070 | anti-sigma factor | moron, auxiliary metabolic gene and host takeover | 1 | 82900 | 83514 |
| YP_009222293.1 | NC_029058_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40689 | 40856 |
| YP_009222253.1 | NC_029058_p15 | hypothetical protein | phrog_23792 | unknown function | unknown function | -1 | 11059 | 11313 |
| YP_009222336.1 | NC_029058_p98 | hypothetical protein | phrog_5070 | unknown function | unknown function | 1 | 89709 | 90236 |
| YP_009222247.1 | NC_029058_p9 | hypothetical protein | phrog_985 | virion structural protein | head and packaging | -1 | 8803 | 9240 |
| YP_009222274.1 | NC_029058_p36 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27139 | 30114 |
| YP_009222265.1 | NC_029058_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20241 | 20462 |
| YP_009222299.1 | NC_029058_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47385 | 48314 |
| YP_009222321.1 | NC_029058_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 77149 | 77391 |
| YP_009222333.1 | NC_029058_p95 | hypothetical protein | phrog_2058 | unknown function | unknown function | 1 | 87335 | 87802 |
| YP_009222339.1 | NC_029058_p101 | hypothetical protein | phrog_5070 | unknown function | unknown function | 1 | 91169 | 91624 |
| YP_009222266.1 | NC_029058_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20492 | 20788 |
| YP_009222354.1 | NC_029058_p116 | hypothetical protein | singleton | unknown function | unknown function | 1 | 100909 | 101682 |
| YP_009222307.1 | NC_029058_p69 | tape measure chaperone protein | phrog_15939 | tail assembly chaperone | tail | 1 | 51778 | 52422 |
| YP_009222312.1 | NC_029058_p74 | hypothetical protein | phrog_1073 | unknown function | unknown function | 1 | 61832 | 62401 |
| YP_009222358.1 | NC_029058_p120 | hypothetical protein | singleton | unknown function | unknown function | 1 | 102901 | 103383 |
| YP_009222361.1 | NC_029058_p123 | DNA polymerase III beta chain | phrog_6615 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 104605 | 105105 |
| YP_009222356.1 | NC_029058_p118 | hypothetical protein | singleton | unknown function | unknown function | 1 | 102176 | 102331 |
| YP_009222255.1 | NC_029058_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12452 | 12637 |
| YP_009222341.1 | NC_029058_p103 | hypothetical protein | singleton | unknown function | unknown function | 1 | 92892 | 93254 |
| YP_009222317.1 | NC_029058_p79 | hypothetical protein | phrog_2204 | glycerophosphoryl diester phosphodiesterase | other | 1 | 67157 | 69748 |
| YP_009222295.1 | NC_029058_p57 | terminase | phrog_675 | terminase large subunit | head and packaging | 1 | 41270 | 43111 |
| YP_009222264.1 | NC_029058_p26 | hypothetical protein | phrog_918 | unknown function | unknown function | -1 | 19939 | 20244 |
| YP_009222311.1 | NC_029058_p73 | hypothetical protein | phrog_1011 | virion structural protein | head and packaging | 1 | 61233 | 61823 |
| YP_009222244.1 | NC_029058_p6 | nicotinamide mononucleotide transporter PnuC | phrog_1880 | PnuC-like nicotinamide mononucleotide transport | moron, auxiliary metabolic gene and host takeover | -1 | 4064 | 4837 |
| YP_009222345.1 | NC_029058_p107 | hypothetical protein | singleton | unknown function | unknown function | 1 | 94886 | 95158 |