Genomic map of Lactobacillus phage LfeInf (NC_029058)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029058
Definition
Lactobacillus phage LfeInf, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; unclassified Herelleviridae.
DB of origin
REFSEQ
Length
106071
Host Name
Lactobacillus fermentum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
124
%GC
38.16
Number of singletons
51
Number of paralogs
8

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009222286.1 NC_029058_p48 hypothetical protein singleton unknown function unknown function 1 36119 36385
YP_009222287.1 NC_029058_p49 hypothetical protein singleton unknown function unknown function 1 36378 36767
YP_009222300.1 NC_029058_p62 hypothetical protein singleton unknown function unknown function -1 48421 48651
YP_009222338.1 NC_029058_p100 hypothetical protein phrog_5070 unknown function unknown function 1 90533 91150
YP_009222340.1 NC_029058_p102 DNA recombinase RecA phrog_97 UvsX-like recombinase other 1 91643 92902
YP_009222277.1 NC_029058_p39 hypothetical protein singleton unknown function unknown function -1 31439 31768
YP_009222328.1 NC_029058_p90 hypothetical protein phrog_18861 unknown function unknown function 1 84558 84911
YP_009222243.1 NC_029058_p5 hypothetical protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism -1 2780 3952
YP_009222250.1 NC_029058_p12 hypothetical protein phrog_34465 unknown function unknown function -1 9890 10225
YP_009222350.1 NC_029058_p112 hypothetical protein phrog_2261 unknown function unknown function 1 98429 98980
YP_009222359.1 NC_029058_p121 hypothetical protein singleton unknown function unknown function 1 103460 103993
YP_009222308.1 NC_029058_p70 tape measure protein phrog_1047 tail associated lysin tail 1 53023 56259
YP_009222252.1 NC_029058_p14 hypothetical protein singleton unknown function unknown function -1 10571 10852
YP_009222342.1 NC_029058_p104 hypothetical protein phrog_1025 RNA polymerase sigma factor transcription regulation 1 93329 94024
YP_009222267.1 NC_029058_p29 hypothetical protein singleton unknown function unknown function -1 20788 21006
YP_009222319.1 NC_029058_p81 hypothetical protein phrog_7926 helicase subunit of the DNA excision repair complex DNA, RNA and nucleotide metabolism 1 70885 71058
YP_009222298.1 NC_029058_p60 prohead peptidase phrog_1028 head maturation protease head and packaging 1 46507 47367
YP_009222292.1 NC_029058_p54 hypothetical protein singleton unknown function unknown function 1 39973 40524
YP_009222276.1 NC_029058_p38 hypothetical protein singleton unknown function unknown function -1 30899 31420
YP_009222288.1 NC_029058_p50 holin phrog_2609 holin lysis 1 36754 37197
YP_009222278.1 NC_029058_p40 hypothetical protein singleton unknown function unknown function -1 32523 32675
YP_009222316.1 NC_029058_p78 hypothetical protein phrog_1394 virion structural protein head and packaging 1 66603 67142
YP_009222254.1 NC_029058_p16 Mg2+ transporter protein phrog_26011 unknown function unknown function 1 11438 12406
YP_009222258.1 NC_029058_p20 hypothetical protein singleton unknown function unknown function -1 15829 16077
YP_009222323.1 NC_029058_p85 hypothetical protein singleton unknown function unknown function 1 77715 78440
YP_009222315.1 NC_029058_p77 hypothetical protein phrog_1160 baseplate protein tail 1 64693 66591
YP_009222263.1 NC_029058_p25 hypothetical protein phrog_1494 unknown function unknown function -1 19752 19952
YP_009222240.1 NC_029058_p2 hypothetical protein phrog_7964 unknown function unknown function -1 1031 2032
YP_009222251.1 NC_029058_p13 hypothetical protein phrog_34465 unknown function unknown function -1 10228 10557
YP_009222280.1 NC_029058_p42 hypothetical protein singleton unknown function unknown function 1 33433 33603
YP_009222256.1 NC_029058_p18 hypothetical protein phrog_1015 tail protein with lysin activity tail -1 12769 14796
YP_009222271.1 NC_029058_p33 hypothetical protein singleton unknown function unknown function -1 25310 26059
YP_009222284.1 NC_029058_p46 hypothetical protein singleton unknown function unknown function 1 35102 35260
YP_009222242.1 NC_029058_p4 hypothetical protein singleton unknown function unknown function -1 2515 2763
YP_009222245.1 NC_029058_p7 hypothetical protein singleton unknown function unknown function -1 4910 5059
YP_009222310.1 NC_029058_p72 hypothetical protein phrog_877 unknown function unknown function 1 56661 61163
YP_009222239.1 NC_029058_p1 hypothetical protein phrog_29017 unknown function unknown function 1 250 678
YP_009222290.1 NC_029058_p52 hypothetical protein phrog_21586 unknown function unknown function 1 38907 39578
YP_009222322.1 NC_029058_p84 hypothetical protein singleton unknown function unknown function 1 77401 77634
YP_009222314.1 NC_029058_p76 baseplate J family protein phrog_6 baseplate wedge subunit tail 1 63136 64692
YP_009222273.1 NC_029058_p35 hypothetical protein singleton unknown function unknown function -1 26925 27149
YP_009222270.1 NC_029058_p32 hypothetical protein phrog_772 tail fiber protein tail -1 23761 24693
YP_009222329.1 NC_029058_p91 hypothetical protein singleton unknown function unknown function 1 84904 85224
YP_009222304.1 NC_029058_p66 hypothetical protein singleton unknown function unknown function 1 51297 51512
YP_009222330.1 NC_029058_p92 hypothetical protein phrog_22218 unknown function unknown function 1 85227 85925
YP_009222353.1 NC_029058_p115 hypothetical protein singleton unknown function unknown function 1 100311 100904
YP_009222301.1 NC_029058_p63 hypothetical protein phrog_1000 unknown function unknown function -1 48655 49491
YP_009222272.1 NC_029058_p34 DNA helicase singleton unknown function unknown function -1 26233 26775
YP_009222318.1 NC_029058_p80 hypothetical protein phrog_3267 tail protein tail 1 69764 70885
YP_009222355.1 NC_029058_p117 hypothetical protein singleton unknown function unknown function 1 102007 102192
YP_009222248.1 NC_029058_p10 hypothetical protein phrog_23792 unknown function unknown function -1 9337 9591
YP_009222347.1 NC_029058_p109 hypothetical protein singleton unknown function unknown function 1 96754 97254
YP_009222344.1 NC_029058_p106 hypothetical protein singleton unknown function unknown function 1 94510 94866
YP_009222260.1 NC_029058_p22 hypothetical protein phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 17900 19012
YP_009222282.1 NC_029058_p44 hypothetical protein singleton unknown function unknown function 1 33850 34299
YP_009222362.1 NC_029058_p124 hypothetical protein phrog_29017 unknown function unknown function 1 105504 105932
YP_009222343.1 NC_029058_p105 hypothetical protein phrog_5070 unknown function unknown function 1 94106 94489
YP_009222279.1 NC_029058_p41 hypothetical protein singleton unknown function unknown function 1 33262 33411
YP_009222352.1 NC_029058_p114 hypothetical protein phrog_1007 unknown function unknown function 1 99593 100303
YP_009222327.1 NC_029058_p89 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 83507 84556
YP_009222291.1 NC_029058_p53 hypothetical protein singleton unknown function unknown function 1 39599 39970
YP_009222305.1 NC_029058_p67 hypothetical protein singleton unknown function unknown function 1 51520 51777
YP_009222303.1 NC_029058_p65 hypothetical protein phrog_1004 virion structural protein head and packaging -1 50207 51181
YP_009222351.1 NC_029058_p113 hypothetical protein singleton unknown function unknown function 1 98981 99334
YP_009222283.1 NC_029058_p45 peptidoglycan-binding protein LysM phrog_4602 transglycosylase other 1 34452 35024
YP_009222259.1 NC_029058_p21 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 16074 17903
YP_009222262.1 NC_029058_p24 hypothetical protein phrog_32676 unknown function unknown function -1 19462 19752
YP_009222346.1 NC_029058_p108 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 95250 96743
YP_009222313.1 NC_029058_p75 GPW/gp25 family protein phrog_975 baseplate protein tail 1 62411 63124
YP_009222281.1 NC_029058_p43 hypothetical protein singleton unknown function unknown function 1 33591 33833
YP_009222360.1 NC_029058_p122 hypothetical protein phrog_37096 unknown function unknown function 1 104085 104453
YP_009222320.1 NC_029058_p82 hypothetical protein phrog_5499 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 71039 77122
YP_009222335.1 NC_029058_p97 hypothetical protein phrog_18678 unknown function unknown function 1 88479 89657
YP_009222269.1 NC_029058_p31 tail sheath protein phrog_279 tail sheath tail -1 21812 23680
YP_009222294.1 NC_029058_p56 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 40856 41269
YP_009222275.1 NC_029058_p37 hypothetical protein singleton unknown function unknown function -1 30127 30264
YP_009222249.1 NC_029058_p11 hypothetical protein phrog_35931 unknown function unknown function -1 9594 9884
YP_009222246.1 NC_029058_p8 lysin phrog_1047 tail associated lysin tail 1 5179 8691
YP_009222325.1 NC_029058_p87 endonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 79892 82885
YP_009222357.1 NC_029058_p119 hypothetical protein singleton unknown function unknown function 1 102438 102881
YP_009222285.1 NC_029058_p47 hypothetical protein singleton unknown function unknown function 1 35283 35723
YP_009222297.1 NC_029058_p59 major capsid protein phrog_752 major head protein head and packaging 1 44909 46399
YP_009222309.1 NC_029058_p71 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 56272 56616
YP_009222268.1 NC_029058_p30 hypothetical protein singleton unknown function unknown function -1 21231 21386
YP_009222334.1 NC_029058_p96 hypothetical protein singleton unknown function unknown function 1 87802 88437
YP_009222289.1 NC_029058_p51 lysin phrog_291 endolysin lysis 1 37286 38755
YP_009222332.1 NC_029058_p94 hypothetical protein phrog_1054 unknown function unknown function 1 86655 87263
YP_009222257.1 NC_029058_p19 hypothetical protein singleton unknown function unknown function -1 14808 15809
YP_009222324.1 NC_029058_p86 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 78422 79888
YP_009222337.1 NC_029058_p99 hypothetical protein phrog_419 unknown function unknown function 1 90267 90473
YP_009222331.1 NC_029058_p93 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 86005 86652
YP_009222261.1 NC_029058_p23 hypothetical protein singleton unknown function unknown function -1 19030 19416
YP_009222348.1 NC_029058_p110 hypothetical protein phrog_1080 unknown function unknown function 1 97244 97792
YP_009222241.1 NC_029058_p3 hypothetical protein singleton unknown function unknown function -1 2164 2382
YP_009222296.1 NC_029058_p58 portal protein phrog_12 portal protein head and packaging 1 43108 44658
YP_009222306.1 NC_029058_p68 tapemeasure chaperone protein phrog_15939 tail assembly chaperone tail 1 51778 52966
YP_009222349.1 NC_029058_p111 hypothetical protein phrog_984 unknown function unknown function 1 97785 98432
YP_009222302.1 NC_029058_p64 hypothetical protein phrog_17976 unknown function unknown function -1 49491 50204
YP_009222326.1 NC_029058_p88 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 82900 83514
YP_009222293.1 NC_029058_p55 hypothetical protein singleton unknown function unknown function 1 40689 40856
YP_009222253.1 NC_029058_p15 hypothetical protein phrog_23792 unknown function unknown function -1 11059 11313
YP_009222336.1 NC_029058_p98 hypothetical protein phrog_5070 unknown function unknown function 1 89709 90236
YP_009222247.1 NC_029058_p9 hypothetical protein phrog_985 virion structural protein head and packaging -1 8803 9240
YP_009222274.1 NC_029058_p36 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 27139 30114
YP_009222265.1 NC_029058_p27 hypothetical protein singleton unknown function unknown function -1 20241 20462
YP_009222299.1 NC_029058_p61 hypothetical protein singleton unknown function unknown function 1 47385 48314
YP_009222321.1 NC_029058_p83 hypothetical protein singleton unknown function unknown function 1 77149 77391
YP_009222333.1 NC_029058_p95 hypothetical protein phrog_2058 unknown function unknown function 1 87335 87802
YP_009222339.1 NC_029058_p101 hypothetical protein phrog_5070 unknown function unknown function 1 91169 91624
YP_009222266.1 NC_029058_p28 hypothetical protein singleton unknown function unknown function -1 20492 20788
YP_009222354.1 NC_029058_p116 hypothetical protein singleton unknown function unknown function 1 100909 101682
YP_009222307.1 NC_029058_p69 tape measure chaperone protein phrog_15939 tail assembly chaperone tail 1 51778 52422
YP_009222312.1 NC_029058_p74 hypothetical protein phrog_1073 unknown function unknown function 1 61832 62401
YP_009222358.1 NC_029058_p120 hypothetical protein singleton unknown function unknown function 1 102901 103383
YP_009222361.1 NC_029058_p123 DNA polymerase III beta chain phrog_6615 DNA polymerase DNA, RNA and nucleotide metabolism 1 104605 105105
YP_009222356.1 NC_029058_p118 hypothetical protein singleton unknown function unknown function 1 102176 102331
YP_009222255.1 NC_029058_p17 hypothetical protein singleton unknown function unknown function -1 12452 12637
YP_009222341.1 NC_029058_p103 hypothetical protein singleton unknown function unknown function 1 92892 93254
YP_009222317.1 NC_029058_p79 hypothetical protein phrog_2204 glycerophosphoryl diester phosphodiesterase other 1 67157 69748
YP_009222295.1 NC_029058_p57 terminase phrog_675 terminase large subunit head and packaging 1 41270 43111
YP_009222264.1 NC_029058_p26 hypothetical protein phrog_918 unknown function unknown function -1 19939 20244
YP_009222311.1 NC_029058_p73 hypothetical protein phrog_1011 virion structural protein head and packaging 1 61233 61823
YP_009222244.1 NC_029058_p6 nicotinamide mononucleotide transporter PnuC phrog_1880 PnuC-like nicotinamide mononucleotide transport moron, auxiliary metabolic gene and host takeover -1 4064 4837
YP_009222345.1 NC_029058_p107 hypothetical protein singleton unknown function unknown function 1 94886 95158