| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029060 |
Definition |
Gordonia phage GordDuk1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordtnkvirus; unclassified Gordtnkvirus. |
DB of origin |
REFSEQ |
Length |
76276 |
Host Name |
Gordonia sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
50.65 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009222527.1 | NC_029060_p74 | hypothetical protein | phrog_22130 | unknown function | unknown function | -1 | 56008 | 56874 |
| YP_009222492.1 | NC_029060_p39 | hypothetical protein | phrog_7609 | unknown function | unknown function | -1 | 39736 | 40161 |
| YP_009222515.1 | NC_029060_p62 | DUF732-like protein | phrog_16415 | unknown function | unknown function | -1 | 49782 | 50228 |
| YP_009222534.1 | NC_029060_p81 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 58886 | 59275 |
| YP_009222475.1 | NC_029060_p22 | lysin | phrog_13480 | endolysin | lysis | 1 | 32200 | 32901 |
| YP_009222470.1 | NC_029060_p17 | hypothetical protein | phrog_5287 | minor tail protein | tail | 1 | 24501 | 27080 |
| YP_009222546.1 | NC_029060_p93 | hypothetical protein | phrog_26956 | unknown function | unknown function | -1 | 70088 | 70270 |
| YP_009222466.1 | NC_029060_p13 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 12536 | 13561 |
| YP_009222533.1 | NC_029060_p80 | hypothetical protein | phrog_29301 | unknown function | unknown function | -1 | 58704 | 58922 |
| YP_009222528.1 | NC_029060_p75 | hypothetical protein | phrog_23800 | unknown function | unknown function | -1 | 56877 | 57257 |
| YP_009222514.1 | NC_029060_p61 | hypothetical protein | phrog_23696 | unknown function | unknown function | -1 | 49553 | 49780 |
| YP_009222456.1 | NC_029060_p3 | DUF935-like protein | phrog_113 | portal protein | head and packaging | 1 | 5216 | 7087 |
| YP_009222497.1 | NC_029060_p44 | hypothetical protein | phrog_10015 | unknown function | unknown function | -1 | 42663 | 42833 |
| YP_009222499.1 | NC_029060_p46 | ferritin-related protein | phrog_22017 | unknown function | unknown function | -1 | 43070 | 43309 |
| YP_009222530.1 | NC_029060_p77 | hypothetical protein | phrog_5406 | unknown function | unknown function | -1 | 57591 | 58301 |
| YP_009222482.1 | NC_029060_p29 | hypothetical protein | phrog_10223 | DNA methyltransferase | other | 1 | 35694 | 35903 |
| YP_009222495.1 | NC_029060_p42 | thymidylate synthase ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 40643 | 41470 |
| YP_009222512.1 | NC_029060_p59 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 47635 | 49176 |
| YP_009222494.1 | NC_029060_p41 | hypothetical protein | phrog_22537 | unknown function | unknown function | -1 | 40333 | 40656 |
| YP_009222460.1 | NC_029060_p7 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 9050 | 10240 |
| YP_009222511.1 | NC_029060_p58 | DNA binding domain protein | phrog_10045 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 47381 | 47638 |
| YP_009222548.1 | NC_029060_p95 | DNA primase | phrog_5311 | helicase | DNA, RNA and nucleotide metabolism | -1 | 72598 | 74616 |
| YP_009222508.1 | NC_029060_p55 | DNA polymerase | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 45513 | 46649 |
| YP_009222472.1 | NC_029060_p19 | hypothetical protein | phrog_26908 | unknown function | unknown function | 1 | 28830 | 30677 |
| YP_009222496.1 | NC_029060_p43 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41476 | 42666 |
| YP_009222489.1 | NC_029060_p36 | hypothetical protein | phrog_24187 | unknown function | unknown function | -1 | 38574 | 38858 |
| YP_009222532.1 | NC_029060_p79 | hypothetical protein | phrog_34492 | unknown function | unknown function | -1 | 58540 | 58707 |
| YP_009222455.1 | NC_029060_p2 | TerL | phrog_2 | terminase large subunit | head and packaging | 1 | 2013 | 5081 |
| YP_009222523.1 | NC_029060_p70 | hypothetical protein | phrog_12293 | unknown function | unknown function | -1 | 53860 | 54210 |
| YP_009222473.1 | NC_029060_p20 | hypothetical protein | phrog_25513 | unknown function | unknown function | 1 | 30681 | 31718 |
| YP_009222540.1 | NC_029060_p87 | von Willebrand factor domain protein | phrog_5298 | cobalamin biosynthesis protein | moron, auxiliary metabolic gene and host takeover | -1 | 62246 | 64879 |
| YP_009222477.1 | NC_029060_p24 | lysin A | phrog_880 | endolysin | lysis | 1 | 33277 | 33933 |
| YP_009222542.1 | NC_029060_p89 | hypothetical protein | phrog_25427 | unknown function | unknown function | -1 | 67760 | 68083 |
| YP_009222539.1 | NC_029060_p86 | hypothetical protein | phrog_24469 | unknown function | unknown function | -1 | 61497 | 61688 |
| YP_009222481.1 | NC_029060_p28 | DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 35030 | 35569 |
| YP_009222536.1 | NC_029060_p83 | hypothetical protein | phrog_23057 | unknown function | unknown function | -1 | 59556 | 60008 |
| YP_009222529.1 | NC_029060_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57407 | 57598 |
| YP_009222491.1 | NC_029060_p38 | hypothetical protein | phrog_5351 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 39363 | 39689 |
| YP_009222462.1 | NC_029060_p9 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 10685 | 11218 |
| YP_009222513.1 | NC_029060_p60 | hypothetical protein | phrog_16754 | unknown function | unknown function | -1 | 49195 | 49572 |
| YP_009222483.1 | NC_029060_p30 | holin | phrog_1298 | minor tail protein | tail | 1 | 35900 | 36391 |
| YP_009222498.1 | NC_029060_p45 | hypothetical protein | phrog_26821 | unknown function | unknown function | -1 | 42906 | 43070 |
| YP_009222458.1 | NC_029060_p5 | hypothetical protein | phrog_976 | head maturation protease | head and packaging | 1 | 7392 | 8558 |
| YP_009222490.1 | NC_029060_p37 | hypothetical protein | phrog_3301 | pyrophosphatase | other | -1 | 38860 | 39399 |
| YP_009222465.1 | NC_029060_p12 | hypothetical protein | phrog_18688 | unknown function | unknown function | 1 | 12219 | 12524 |
| YP_009222535.1 | NC_029060_p82 | hypothetical protein | phrog_18600 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 59335 | 59550 |
| YP_009222500.1 | NC_029060_p47 | transcription factor WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | -1 | 43320 | 43538 |
| YP_009222516.1 | NC_029060_p63 | hypothetical protein | phrog_14234 | unknown function | unknown function | -1 | 50549 | 51214 |
| YP_009222549.1 | NC_029060_p96 | hypothetical protein | phrog_5558 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 74620 | 75111 |
| YP_009222454.1 | NC_029060_p1 | hypothetical protein | phrog_16015 | terminase small subunit | head and packaging | 1 | 393 | 2012 |
| YP_009222468.1 | NC_029060_p15 | pre-TMP frameshift protein | phrog_3096 | tail assembly chaperone | tail | 1 | 13708 | 14313 |
| YP_009222484.1 | NC_029060_p31 | holin | phrog_726 | unknown function | unknown function | 1 | 36394 | 36792 |
| YP_009222521.1 | NC_029060_p68 | hypothetical protein | phrog_17617 | unknown function | unknown function | -1 | 53286 | 53570 |
| YP_009222547.1 | NC_029060_p94 | hypothetical protein | phrog_37971 | unknown function | unknown function | -1 | 70375 | 70752 |
| YP_009222501.1 | NC_029060_p48 | hypothetical protein | phrog_14812 | unknown function | unknown function | -1 | 43604 | 43852 |
| YP_009222510.1 | NC_029060_p57 | ribonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 46788 | 47378 |
| YP_009222487.1 | NC_029060_p34 | hypothetical protein | phrog_26139 | unknown function | unknown function | -1 | 38052 | 38405 |
| YP_009222463.1 | NC_029060_p10 | morphogensis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 11215 | 11703 |
| YP_009222474.1 | NC_029060_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 31740 | 32123 |
| YP_009222457.1 | NC_029060_p4 | hypothetical protein | phrog_20049 | unknown function | unknown function | 1 | 7143 | 7361 |
| YP_009222524.1 | NC_029060_p71 | integrase | phrog_1 | integrase | integration and excision | -1 | 54211 | 55008 |
| YP_009222538.1 | NC_029060_p85 | hypothetical protein | phrog_20135 | unknown function | unknown function | -1 | 60750 | 61370 |
| YP_009222478.1 | NC_029060_p25 | hypothetical protein | phrog_22476 | unknown function | unknown function | 1 | 33935 | 34201 |
| YP_009222526.1 | NC_029060_p73 | hypothetical protein | phrog_27660 | unknown function | unknown function | -1 | 55549 | 55878 |
| YP_009222479.1 | NC_029060_p26 | hypothetical protein | phrog_18341 | peptidase | other | 1 | 34206 | 34574 |
| YP_009222471.1 | NC_029060_p18 | hypothetical protein | phrog_1887 | tail protein | tail | 1 | 27100 | 28833 |
| YP_009222507.1 | NC_029060_p54 | hypothetical protein | phrog_2021 | unknown function | unknown function | -1 | 45203 | 45511 |
| YP_009222467.1 | NC_029060_p14 | pre-TMP frameshift protein | phrog_3096 | tail assembly chaperone | tail | 1 | 13708 | 14573 |
| YP_009222464.1 | NC_029060_p11 | hypothetical protein | phrog_5299 | unknown function | unknown function | 1 | 11700 | 12203 |
| YP_009222503.1 | NC_029060_p50 | hypothetical protein | phrog_24706 | unknown function | unknown function | -1 | 44416 | 44667 |
| YP_009222517.1 | NC_029060_p64 | hypothetical protein | phrog_26509 | unknown function | unknown function | -1 | 51370 | 51660 |
| YP_009222545.1 | NC_029060_p92 | hypothetical protein | phrog_15017 | unknown function | unknown function | -1 | 69710 | 69964 |
| YP_009222486.1 | NC_029060_p33 | lysin B | phrog_102 | endolysin | lysis | 1 | 37164 | 37949 |
| YP_009222519.1 | NC_029060_p66 | hypothetical protein | phrog_15020 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 52458 | 52970 |
| YP_009222544.1 | NC_029060_p91 | hypothetical protein | phrog_24480 | unknown function | unknown function | -1 | 69499 | 69690 |
| YP_009222520.1 | NC_029060_p67 | hypothetical protein | phrog_24125 | unknown function | unknown function | -1 | 52963 | 53289 |
| YP_009222461.1 | NC_029060_p8 | hypothetical protein | phrog_15701 | unknown function | unknown function | 1 | 10273 | 10563 |
| YP_009222469.1 | NC_029060_p16 | tape measure protein | phrog_5448 | tail length tape measure protein | tail | 1 | 14680 | 24498 |
| YP_009222485.1 | NC_029060_p32 | hypothetical protein | phrog_16963 | unknown function | unknown function | 1 | 36838 | 37167 |
| YP_009222480.1 | NC_029060_p27 | holin | phrog_565 | holin | lysis | 1 | 34584 | 35030 |
| YP_009222488.1 | NC_029060_p35 | hypothetical protein | phrog_22918 | unknown function | unknown function | -1 | 38409 | 38564 |
| YP_009222531.1 | NC_029060_p78 | hypothetical protein | phrog_16893 | unknown function | unknown function | -1 | 58301 | 58543 |
| YP_009222509.1 | NC_029060_p56 | hypothetical protein | phrog_36096 | unknown function | unknown function | -1 | 46656 | 46778 |
| YP_009222476.1 | NC_029060_p23 | hypothetical protein | phrog_18568 | unknown function | unknown function | 1 | 32912 | 33277 |
| YP_009222505.1 | NC_029060_p52 | hypothetical protein | phrog_30711 | unknown function | unknown function | -1 | 44863 | 45054 |
| YP_009222518.1 | NC_029060_p65 | hypothetical protein | phrog_5686 | unknown function | unknown function | -1 | 51662 | 52528 |
| YP_009222541.1 | NC_029060_p88 | ATPase | phrog_5424 | ATPase | other | -1 | 65001 | 66848 |
| YP_009222550.1 | NC_029060_p97 | hypothetical protein | phrog_5362 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 75140 | 75898 |
| YP_009222459.1 | NC_029060_p6 | hypothetical protein | phrog_5455 | head decoration | head and packaging | 1 | 8573 | 9037 |
| YP_009222522.1 | NC_029060_p69 | hypothetical protein | phrog_23729 | unknown function | unknown function | -1 | 53571 | 53867 |
| YP_009222537.1 | NC_029060_p84 | methyltransferase | phrog_15480 | methyltransferase | other | -1 | 60010 | 60753 |
| YP_009222506.1 | NC_029060_p53 | hypothetical protein | phrog_20832 | unknown function | unknown function | -1 | 45051 | 45203 |
| YP_009222525.1 | NC_029060_p72 | hypothetical protein | phrog_23870 | unknown function | unknown function | -1 | 55172 | 55552 |
| YP_009222543.1 | NC_029060_p90 | hypothetical protein | phrog_15295 | unknown function | unknown function | -1 | 68227 | 69111 |
| YP_009222493.1 | NC_029060_p40 | hypothetical protein | phrog_23689 | unknown function | unknown function | -1 | 40154 | 40336 |
| YP_009222502.1 | NC_029060_p49 | RusA-like ribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 43865 | 44419 |
| YP_009222504.1 | NC_029060_p51 | hypothetical protein | phrog_28446 | unknown function | unknown function | -1 | 44645 | 44863 |