Genomic map of Gordonia phage GordDuk1 (NC_029060)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029060
Definition
Gordonia phage GordDuk1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordtnkvirus; unclassified Gordtnkvirus.
DB of origin
REFSEQ
Length
76276
Host Name
Gordonia sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
97
%GC
50.65
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009222527.1 NC_029060_p74 hypothetical protein phrog_22130 unknown function unknown function -1 56008 56874
YP_009222492.1 NC_029060_p39 hypothetical protein phrog_7609 unknown function unknown function -1 39736 40161
YP_009222515.1 NC_029060_p62 DUF732-like protein phrog_16415 unknown function unknown function -1 49782 50228
YP_009222534.1 NC_029060_p81 hypothetical protein phrog_289 GTP-binding domain other -1 58886 59275
YP_009222475.1 NC_029060_p22 lysin phrog_13480 endolysin lysis 1 32200 32901
YP_009222470.1 NC_029060_p17 hypothetical protein phrog_5287 minor tail protein tail 1 24501 27080
YP_009222546.1 NC_029060_p93 hypothetical protein phrog_26956 unknown function unknown function -1 70088 70270
YP_009222466.1 NC_029060_p13 hypothetical protein phrog_290 minor tail protein tail 1 12536 13561
YP_009222533.1 NC_029060_p80 hypothetical protein phrog_29301 unknown function unknown function -1 58704 58922
YP_009222528.1 NC_029060_p75 hypothetical protein phrog_23800 unknown function unknown function -1 56877 57257
YP_009222514.1 NC_029060_p61 hypothetical protein phrog_23696 unknown function unknown function -1 49553 49780
YP_009222456.1 NC_029060_p3 DUF935-like protein phrog_113 portal protein head and packaging 1 5216 7087
YP_009222497.1 NC_029060_p44 hypothetical protein phrog_10015 unknown function unknown function -1 42663 42833
YP_009222499.1 NC_029060_p46 ferritin-related protein phrog_22017 unknown function unknown function -1 43070 43309
YP_009222530.1 NC_029060_p77 hypothetical protein phrog_5406 unknown function unknown function -1 57591 58301
YP_009222482.1 NC_029060_p29 hypothetical protein phrog_10223 DNA methyltransferase other 1 35694 35903
YP_009222495.1 NC_029060_p42 thymidylate synthase ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 40643 41470
YP_009222512.1 NC_029060_p59 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 47635 49176
YP_009222494.1 NC_029060_p41 hypothetical protein phrog_22537 unknown function unknown function -1 40333 40656
YP_009222460.1 NC_029060_p7 major capsid protein phrog_29 major head protein head and packaging 1 9050 10240
YP_009222511.1 NC_029060_p58 DNA binding domain protein phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 47381 47638
YP_009222548.1 NC_029060_p95 DNA primase phrog_5311 helicase DNA, RNA and nucleotide metabolism -1 72598 74616
YP_009222508.1 NC_029060_p55 DNA polymerase phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 45513 46649
YP_009222472.1 NC_029060_p19 hypothetical protein phrog_26908 unknown function unknown function 1 28830 30677
YP_009222496.1 NC_029060_p43 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 41476 42666
YP_009222489.1 NC_029060_p36 hypothetical protein phrog_24187 unknown function unknown function -1 38574 38858
YP_009222532.1 NC_029060_p79 hypothetical protein phrog_34492 unknown function unknown function -1 58540 58707
YP_009222455.1 NC_029060_p2 TerL phrog_2 terminase large subunit head and packaging 1 2013 5081
YP_009222523.1 NC_029060_p70 hypothetical protein phrog_12293 unknown function unknown function -1 53860 54210
YP_009222473.1 NC_029060_p20 hypothetical protein phrog_25513 unknown function unknown function 1 30681 31718
YP_009222540.1 NC_029060_p87 von Willebrand factor domain protein phrog_5298 cobalamin biosynthesis protein moron, auxiliary metabolic gene and host takeover -1 62246 64879
YP_009222477.1 NC_029060_p24 lysin A phrog_880 endolysin lysis 1 33277 33933
YP_009222542.1 NC_029060_p89 hypothetical protein phrog_25427 unknown function unknown function -1 67760 68083
YP_009222539.1 NC_029060_p86 hypothetical protein phrog_24469 unknown function unknown function -1 61497 61688
YP_009222481.1 NC_029060_p28 DNA methylase phrog_363 DNA methyltransferase other 1 35030 35569
YP_009222536.1 NC_029060_p83 hypothetical protein phrog_23057 unknown function unknown function -1 59556 60008
YP_009222529.1 NC_029060_p76 hypothetical protein singleton unknown function unknown function -1 57407 57598
YP_009222491.1 NC_029060_p38 hypothetical protein phrog_5351 HNH endonuclease DNA, RNA and nucleotide metabolism -1 39363 39689
YP_009222462.1 NC_029060_p9 hypothetical protein phrog_195 head-tail adaptor connector 1 10685 11218
YP_009222513.1 NC_029060_p60 hypothetical protein phrog_16754 unknown function unknown function -1 49195 49572
YP_009222483.1 NC_029060_p30 holin phrog_1298 minor tail protein tail 1 35900 36391
YP_009222498.1 NC_029060_p45 hypothetical protein phrog_26821 unknown function unknown function -1 42906 43070
YP_009222458.1 NC_029060_p5 hypothetical protein phrog_976 head maturation protease head and packaging 1 7392 8558
YP_009222490.1 NC_029060_p37 hypothetical protein phrog_3301 pyrophosphatase other -1 38860 39399
YP_009222465.1 NC_029060_p12 hypothetical protein phrog_18688 unknown function unknown function 1 12219 12524
YP_009222535.1 NC_029060_p82 hypothetical protein phrog_18600 DNA binding protein DNA, RNA and nucleotide metabolism -1 59335 59550
YP_009222500.1 NC_029060_p47 transcription factor WhiB phrog_472 WhiB transcriptional factor transcription regulation -1 43320 43538
YP_009222516.1 NC_029060_p63 hypothetical protein phrog_14234 unknown function unknown function -1 50549 51214
YP_009222549.1 NC_029060_p96 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 74620 75111
YP_009222454.1 NC_029060_p1 hypothetical protein phrog_16015 terminase small subunit head and packaging 1 393 2012
YP_009222468.1 NC_029060_p15 pre-TMP frameshift protein phrog_3096 tail assembly chaperone tail 1 13708 14313
YP_009222484.1 NC_029060_p31 holin phrog_726 unknown function unknown function 1 36394 36792
YP_009222521.1 NC_029060_p68 hypothetical protein phrog_17617 unknown function unknown function -1 53286 53570
YP_009222547.1 NC_029060_p94 hypothetical protein phrog_37971 unknown function unknown function -1 70375 70752
YP_009222501.1 NC_029060_p48 hypothetical protein phrog_14812 unknown function unknown function -1 43604 43852
YP_009222510.1 NC_029060_p57 ribonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 46788 47378
YP_009222487.1 NC_029060_p34 hypothetical protein phrog_26139 unknown function unknown function -1 38052 38405
YP_009222463.1 NC_029060_p10 morphogensis protein phrog_26 tail completion or Neck1 protein connector 1 11215 11703
YP_009222474.1 NC_029060_p21 hypothetical protein phrog_240 head protein head and packaging 1 31740 32123
YP_009222457.1 NC_029060_p4 hypothetical protein phrog_20049 unknown function unknown function 1 7143 7361
YP_009222524.1 NC_029060_p71 integrase phrog_1 integrase integration and excision -1 54211 55008
YP_009222538.1 NC_029060_p85 hypothetical protein phrog_20135 unknown function unknown function -1 60750 61370
YP_009222478.1 NC_029060_p25 hypothetical protein phrog_22476 unknown function unknown function 1 33935 34201
YP_009222526.1 NC_029060_p73 hypothetical protein phrog_27660 unknown function unknown function -1 55549 55878
YP_009222479.1 NC_029060_p26 hypothetical protein phrog_18341 peptidase other 1 34206 34574
YP_009222471.1 NC_029060_p18 hypothetical protein phrog_1887 tail protein tail 1 27100 28833
YP_009222507.1 NC_029060_p54 hypothetical protein phrog_2021 unknown function unknown function -1 45203 45511
YP_009222467.1 NC_029060_p14 pre-TMP frameshift protein phrog_3096 tail assembly chaperone tail 1 13708 14573
YP_009222464.1 NC_029060_p11 hypothetical protein phrog_5299 unknown function unknown function 1 11700 12203
YP_009222503.1 NC_029060_p50 hypothetical protein phrog_24706 unknown function unknown function -1 44416 44667
YP_009222517.1 NC_029060_p64 hypothetical protein phrog_26509 unknown function unknown function -1 51370 51660
YP_009222545.1 NC_029060_p92 hypothetical protein phrog_15017 unknown function unknown function -1 69710 69964
YP_009222486.1 NC_029060_p33 lysin B phrog_102 endolysin lysis 1 37164 37949
YP_009222519.1 NC_029060_p66 hypothetical protein phrog_15020 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 52458 52970
YP_009222544.1 NC_029060_p91 hypothetical protein phrog_24480 unknown function unknown function -1 69499 69690
YP_009222520.1 NC_029060_p67 hypothetical protein phrog_24125 unknown function unknown function -1 52963 53289
YP_009222461.1 NC_029060_p8 hypothetical protein phrog_15701 unknown function unknown function 1 10273 10563
YP_009222469.1 NC_029060_p16 tape measure protein phrog_5448 tail length tape measure protein tail 1 14680 24498
YP_009222485.1 NC_029060_p32 hypothetical protein phrog_16963 unknown function unknown function 1 36838 37167
YP_009222480.1 NC_029060_p27 holin phrog_565 holin lysis 1 34584 35030
YP_009222488.1 NC_029060_p35 hypothetical protein phrog_22918 unknown function unknown function -1 38409 38564
YP_009222531.1 NC_029060_p78 hypothetical protein phrog_16893 unknown function unknown function -1 58301 58543
YP_009222509.1 NC_029060_p56 hypothetical protein phrog_36096 unknown function unknown function -1 46656 46778
YP_009222476.1 NC_029060_p23 hypothetical protein phrog_18568 unknown function unknown function 1 32912 33277
YP_009222505.1 NC_029060_p52 hypothetical protein phrog_30711 unknown function unknown function -1 44863 45054
YP_009222518.1 NC_029060_p65 hypothetical protein phrog_5686 unknown function unknown function -1 51662 52528
YP_009222541.1 NC_029060_p88 ATPase phrog_5424 ATPase other -1 65001 66848
YP_009222550.1 NC_029060_p97 hypothetical protein phrog_5362 DNA primase DNA, RNA and nucleotide metabolism -1 75140 75898
YP_009222459.1 NC_029060_p6 hypothetical protein phrog_5455 head decoration head and packaging 1 8573 9037
YP_009222522.1 NC_029060_p69 hypothetical protein phrog_23729 unknown function unknown function -1 53571 53867
YP_009222537.1 NC_029060_p84 methyltransferase phrog_15480 methyltransferase other -1 60010 60753
YP_009222506.1 NC_029060_p53 hypothetical protein phrog_20832 unknown function unknown function -1 45051 45203
YP_009222525.1 NC_029060_p72 hypothetical protein phrog_23870 unknown function unknown function -1 55172 55552
YP_009222543.1 NC_029060_p90 hypothetical protein phrog_15295 unknown function unknown function -1 68227 69111
YP_009222493.1 NC_029060_p40 hypothetical protein phrog_23689 unknown function unknown function -1 40154 40336
YP_009222502.1 NC_029060_p49 RusA-like ribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 43865 44419
YP_009222504.1 NC_029060_p51 hypothetical protein phrog_28446 unknown function unknown function -1 44645 44863