| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029061 |
Definition |
Rhodoferax phage P26218, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
36315 |
Host Name |
Rhodoferax |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
44 |
%GC |
56.69 |
Number of singletons |
21 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009222560.1 | NC_029061_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5407 | 5850 |
| YP_009222583.1 | NC_029061_p33 | hypothetical protein | phrog_12985 | unknown function | unknown function | -1 | 24480 | 25184 |
| YP_009222587.1 | NC_029061_p37 | coat protein | phrog_283 | major head protein | head and packaging | -1 | 26560 | 27771 |
| YP_009222580.1 | NC_029061_p30 | hypothetical protein | phrog_34170 | unknown function | unknown function | -1 | 21857 | 22732 |
| YP_009222593.1 | NC_029061_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33654 | 33947 |
| YP_009222556.1 | NC_029061_p6 | hypothetical protein | phrog_872 | unknown function | unknown function | 1 | 2879 | 3424 |
| YP_009222590.1 | NC_029061_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30844 | 31236 |
| YP_009222591.1 | NC_029061_p41 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 31252 | 32769 |
| YP_009222552.1 | NC_029061_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 463 | 651 |
| YP_009222567.1 | NC_029061_p17 | hypothetical protein | phrog_6047 | unknown function | unknown function | 1 | 12241 | 12780 |
| YP_009222589.1 | NC_029061_p39 | portal protein | phrog_156 | portal protein | head and packaging | -1 | 28655 | 30847 |
| YP_009222565.1 | NC_029061_p15 | hypothetical protein | phrog_800 | terminase small subunit | head and packaging | 1 | 10603 | 11181 |
| YP_009222582.1 | NC_029061_p32 | hypothetical protein | phrog_578 | head closure Hc3 | connector | -1 | 23051 | 24478 |
| YP_009222562.1 | NC_029061_p12 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7865 | 8176 |
| YP_009222576.1 | NC_029061_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16342 | 17721 |
| YP_009222566.1 | NC_029061_p16 | thymidylate synthase | phrog_5131 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 11195 | 12244 |
| YP_009222577.1 | NC_029061_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17877 | 19718 |
| YP_009222554.1 | NC_029061_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1034 | 1918 |
| YP_009222579.1 | NC_029061_p29 | hypothetical protein | phrog_598 | DNA ejection | DNA, RNA and nucleotide metabolism | -1 | 21120 | 21860 |
| YP_009222584.1 | NC_029061_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25194 | 25640 |
| YP_009222561.1 | NC_029061_p11 | DNA polymerase domain A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5925 | 7889 |
| YP_009222551.1 | NC_029061_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 199 | 396 |
| YP_009222572.1 | NC_029061_p22 | hypothetical protein | phrog_315 | endolysin | lysis | -1 | 14668 | 15213 |
| YP_009222573.1 | NC_029061_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15221 | 15403 |
| YP_009222569.1 | NC_029061_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13383 | 13709 |
| YP_009222570.1 | NC_029061_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13776 | 14024 |
| YP_009222575.1 | NC_029061_p25 | hypothetical protein | phrog_188 | tail fiber assembly protein | tail | -1 | 15995 | 16333 |
| YP_009222594.1 | NC_029061_p44 | RepA | phrog_296 | DNA transposition protein | integration and excision | -1 | 33944 | 36115 |
| YP_009222574.1 | NC_029061_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15489 | 15998 |
| YP_009222555.1 | NC_029061_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1919 | 2821 |
| YP_009222571.1 | NC_029061_p21 | hypothetical protein | phrog_1544 | unknown function | unknown function | -1 | 14138 | 14668 |
| YP_009222588.1 | NC_029061_p38 | hypothetical protein | phrog_8865 | head scaffolding protein | head and packaging | -1 | 27801 | 28658 |
| YP_009222585.1 | NC_029061_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25786 | 25986 |
| YP_009222563.1 | NC_029061_p13 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 8201 | 9730 |
| YP_009222564.1 | NC_029061_p14 | hypothetical protein | phrog_6364 | unknown function | unknown function | 1 | 9773 | 10606 |
| YP_009222557.1 | NC_029061_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3486 | 4172 |
| YP_009222553.1 | NC_029061_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 681 | 920 |
| YP_009222559.1 | NC_029061_p9 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4737 | 5342 |
| YP_009222581.1 | NC_029061_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22734 | 23054 |
| YP_009222568.1 | NC_029061_p18 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 12777 | 13265 |
| YP_009222586.1 | NC_029061_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26102 | 26500 |
| YP_009222592.1 | NC_029061_p42 | hypothetical protein | phrog_15261 | unknown function | unknown function | -1 | 32759 | 33145 |
| YP_009222558.1 | NC_029061_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4169 | 4570 |
| YP_009222578.1 | NC_029061_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19718 | 21106 |