Genomic map of Rhodoferax phage P26218 (NC_029061)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029061
Definition
Rhodoferax phage P26218, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
36315
Host Name
Rhodoferax
Host domain
Bacteria
Is prophage?
undef
Number of proteins
44
%GC
56.69
Number of singletons
21
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009222560.1 NC_029061_p10 hypothetical protein singleton unknown function unknown function 1 5407 5850
YP_009222583.1 NC_029061_p33 hypothetical protein phrog_12985 unknown function unknown function -1 24480 25184
YP_009222587.1 NC_029061_p37 coat protein phrog_283 major head protein head and packaging -1 26560 27771
YP_009222580.1 NC_029061_p30 hypothetical protein phrog_34170 unknown function unknown function -1 21857 22732
YP_009222593.1 NC_029061_p43 hypothetical protein singleton unknown function unknown function -1 33654 33947
YP_009222556.1 NC_029061_p6 hypothetical protein phrog_872 unknown function unknown function 1 2879 3424
YP_009222590.1 NC_029061_p40 hypothetical protein singleton unknown function unknown function -1 30844 31236
YP_009222591.1 NC_029061_p41 terminase large subunit phrog_2 terminase large subunit head and packaging -1 31252 32769
YP_009222552.1 NC_029061_p2 hypothetical protein singleton unknown function unknown function 1 463 651
YP_009222567.1 NC_029061_p17 hypothetical protein phrog_6047 unknown function unknown function 1 12241 12780
YP_009222589.1 NC_029061_p39 portal protein phrog_156 portal protein head and packaging -1 28655 30847
YP_009222565.1 NC_029061_p15 hypothetical protein phrog_800 terminase small subunit head and packaging 1 10603 11181
YP_009222582.1 NC_029061_p32 hypothetical protein phrog_578 head closure Hc3 connector -1 23051 24478
YP_009222562.1 NC_029061_p12 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 7865 8176
YP_009222576.1 NC_029061_p26 hypothetical protein singleton unknown function unknown function -1 16342 17721
YP_009222566.1 NC_029061_p16 thymidylate synthase phrog_5131 thymidylate synthase DNA, RNA and nucleotide metabolism 1 11195 12244
YP_009222577.1 NC_029061_p27 hypothetical protein singleton unknown function unknown function -1 17877 19718
YP_009222554.1 NC_029061_p4 hypothetical protein singleton unknown function unknown function 1 1034 1918
YP_009222579.1 NC_029061_p29 hypothetical protein phrog_598 DNA ejection DNA, RNA and nucleotide metabolism -1 21120 21860
YP_009222584.1 NC_029061_p34 hypothetical protein singleton unknown function unknown function -1 25194 25640
YP_009222561.1 NC_029061_p11 DNA polymerase domain A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 5925 7889
YP_009222551.1 NC_029061_p1 hypothetical protein singleton unknown function unknown function 1 199 396
YP_009222572.1 NC_029061_p22 hypothetical protein phrog_315 endolysin lysis -1 14668 15213
YP_009222573.1 NC_029061_p23 hypothetical protein singleton unknown function unknown function -1 15221 15403
YP_009222569.1 NC_029061_p19 hypothetical protein singleton unknown function unknown function 1 13383 13709
YP_009222570.1 NC_029061_p20 hypothetical protein singleton unknown function unknown function 1 13776 14024
YP_009222575.1 NC_029061_p25 hypothetical protein phrog_188 tail fiber assembly protein tail -1 15995 16333
YP_009222594.1 NC_029061_p44 RepA phrog_296 DNA transposition protein integration and excision -1 33944 36115
YP_009222574.1 NC_029061_p24 hypothetical protein singleton unknown function unknown function -1 15489 15998
YP_009222555.1 NC_029061_p5 hypothetical protein singleton unknown function unknown function 1 1919 2821
YP_009222571.1 NC_029061_p21 hypothetical protein phrog_1544 unknown function unknown function -1 14138 14668
YP_009222588.1 NC_029061_p38 hypothetical protein phrog_8865 head scaffolding protein head and packaging -1 27801 28658
YP_009222585.1 NC_029061_p35 hypothetical protein singleton unknown function unknown function -1 25786 25986
YP_009222563.1 NC_029061_p13 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 8201 9730
YP_009222564.1 NC_029061_p14 hypothetical protein phrog_6364 unknown function unknown function 1 9773 10606
YP_009222557.1 NC_029061_p7 hypothetical protein singleton unknown function unknown function 1 3486 4172
YP_009222553.1 NC_029061_p3 hypothetical protein singleton unknown function unknown function 1 681 920
YP_009222559.1 NC_029061_p9 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 4737 5342
YP_009222581.1 NC_029061_p31 hypothetical protein singleton unknown function unknown function -1 22734 23054
YP_009222568.1 NC_029061_p18 hypothetical protein phrog_5839 unknown function unknown function 1 12777 13265
YP_009222586.1 NC_029061_p36 hypothetical protein singleton unknown function unknown function -1 26102 26500
YP_009222592.1 NC_029061_p42 hypothetical protein phrog_15261 unknown function unknown function -1 32759 33145
YP_009222558.1 NC_029061_p8 hypothetical protein singleton unknown function unknown function 1 4169 4570
YP_009222578.1 NC_029061_p28 hypothetical protein singleton unknown function unknown function -1 19718 21106