Genomic map of Pseudomonas phage VCM (NC_029065)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029065
Definition
Pseudomonas phage VCM genome assembly VCM, chromosome : 1.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Otagovirus; Pseudomonas virus VCM.
DB of origin
REFSEQ
Length
98765
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
172
%GC
48.5
Number of singletons
20
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009222763.1 NC_029065_p165 hypothetical protein phrog_27253 unknown function unknown function 1 95253 95456
YP_009222707.1 NC_029065_p109 hypothetical protein phrog_29 major head protein head and packaging -1 61891 62946
YP_009222659.1 NC_029065_p61 hypothetical protein phrog_7029 unknown function unknown function -1 28344 28595
YP_009222625.1 NC_029065_p27 hypothetical protein phrog_13040 unknown function unknown function -1 12546 12761
YP_009222688.1 NC_029065_p90 hypothetical protein phrog_1795 tail fiber protein tail -1 45673 46182
YP_009222620.1 NC_029065_p22 hypothetical protein phrog_24648 unknown function unknown function -1 10490 10678
YP_009222739.1 NC_029065_p141 hypothetical protein phrog_2071 ATPase other 1 82822 83214
YP_009222647.1 NC_029065_p49 ribonucleotide-diphosphate reductase subunit beta phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 21603 22661
YP_009222697.1 NC_029065_p99 hypothetical protein phrog_991 tail length tape measure protein tail -1 53986 56349
YP_009222603.1 NC_029065_p5 hypothetical protein singleton unknown function unknown function -1 1584 1799
YP_009222637.1 NC_029065_p39 hypothetical protein phrog_5658 pyrophosphatase other -1 17521 17934
YP_009222663.1 NC_029065_p65 hypothetical protein phrog_10905 unknown function unknown function -1 30673 31134
YP_009222636.1 NC_029065_p38 hypothetical protein phrog_23943 unknown function unknown function -1 17069 17524
YP_009222743.1 NC_029065_p145 hypothetical protein phrog_29495 unknown function unknown function 1 86873 86998
YP_009222643.1 NC_029065_p45 hypothetical protein phrog_12065 unknown function unknown function -1 18898 19239
YP_009222638.1 NC_029065_p40 hypothetical protein phrog_32527 unknown function unknown function -1 17931 18146
YP_009222769.1 NC_029065_p171 hypothetical protein phrog_4025 unknown function unknown function -1 98163 98522
YP_009222654.1 NC_029065_p56 hypothetical protein phrog_221 metallo-phosphoesterase other -1 25300 26073
YP_009222750.1 NC_029065_p152 hypothetical protein phrog_11280 unknown function unknown function 1 89404 89640
YP_009222657.1 NC_029065_p59 hypothetical protein phrog_34379 unknown function unknown function -1 27042 27260
YP_009222693.1 NC_029065_p95 hypothetical protein phrog_11 baseplate spike tail -1 51147 51908
YP_009222671.1 NC_029065_p73 hypothetical protein phrog_1491 tail fiber protein tail -1 37236 37853
YP_009222685.1 NC_029065_p87 hypothetical protein phrog_21126 unknown function unknown function -1 43317 43607
YP_009222710.1 NC_029065_p112 hypothetical protein phrog_1530 DNA methyltransferase other -1 64286 64738
YP_009222755.1 NC_029065_p157 hypothetical protein phrog_10873 unknown function unknown function 1 92863 93207
YP_009222626.1 NC_029065_p28 hypothetical protein phrog_19964 membrane protein moron, auxiliary metabolic gene and host takeover -1 12763 13092
YP_009222700.1 NC_029065_p102 hypothetical protein phrog_280 virion structural protein head and packaging -1 57549 58052
YP_009222611.1 NC_029065_p13 hypothetical protein singleton unknown function unknown function -1 6480 6596
YP_009222606.1 NC_029065_p8 hypothetical protein phrog_36010 unknown function unknown function -1 2898 4361
YP_009222747.1 NC_029065_p149 hypothetical protein phrog_35660 unknown function unknown function 1 88583 88786
YP_009222615.1 NC_029065_p17 hypothetical protein singleton unknown function unknown function -1 7526 7672
YP_009222630.1 NC_029065_p32 hypothetical protein singleton unknown function unknown function -1 13778 14302
YP_009222608.1 NC_029065_p10 hypothetical protein phrog_5336 unknown function unknown function -1 4923 5282
YP_009222664.1 NC_029065_p66 hypothetical protein phrog_14269 unknown function unknown function -1 31167 31352
YP_009222655.1 NC_029065_p57 hypothetical protein phrog_5822 unknown function unknown function -1 26070 26417
YP_009222760.1 NC_029065_p162 hypothetical protein phrog_37145 unknown function unknown function 1 94030 94500
YP_009222645.1 NC_029065_p47 hypothetical protein phrog_25682 unknown function unknown function -1 19475 19834
YP_009222714.1 NC_029065_p116 GDSL-like Lipase/Acylhydrolase phrog_6102 lipase moron, auxiliary metabolic gene and host takeover -1 68086 69366
YP_009222715.1 NC_029065_p117 hypothetical protein singleton unknown function unknown function -1 69934 70098
YP_009222759.1 NC_029065_p161 hypothetical protein phrog_12309 unknown function unknown function 1 93739 93993
YP_009222748.1 NC_029065_p150 hypothetical protein phrog_12988 unknown function unknown function 1 88788 89036
YP_009222691.1 NC_029065_p93 Baseplate J-like protein phrog_6 baseplate wedge subunit tail -1 49313 50770
YP_009222729.1 NC_029065_p131 tRNA-specific adenosine deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 77615 78022
YP_009222724.1 NC_029065_p126 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other 1 75417 76193
YP_009222666.1 NC_029065_p68 DNA polymerase family A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 31701 34001
YP_009222601.1 NC_029065_p3 hypothetical protein phrog_11435 unknown function unknown function -1 802 1233
YP_009222758.1 NC_029065_p160 hypothetical protein phrog_15766 unknown function unknown function 1 93557 93742
YP_009222633.1 NC_029065_p35 hypothetical protein phrog_4317 unknown function unknown function -1 15577 16302
YP_009222612.1 NC_029065_p14 hypothetical protein phrog_4323 unknown function unknown function -1 6670 6810
YP_009222752.1 NC_029065_p154 von Willebrand factor type A domain protein phrog_5359 unknown function unknown function 1 90802 91443
YP_009222622.1 NC_029065_p24 hypothetical protein phrog_6076 unknown function unknown function -1 11908 12099
YP_009222682.1 NC_029065_p84 hypothetical protein phrog_3899 unknown function unknown function -1 42127 42450
YP_009222699.1 NC_029065_p101 hypothetical protein phrog_280 virion structural protein head and packaging -1 57003 57536
YP_009222690.1 NC_029065_p92 hypothetical protein phrog_587 structural protein head and packaging -1 48565 49299
YP_009222674.1 NC_029065_p76 hypothetical protein phrog_12336 unknown function unknown function -1 38684 38878
YP_009222641.1 NC_029065_p43 Glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 18519 18752
YP_009222722.1 NC_029065_p124 hypothetical protein phrog_5019 unknown function unknown function 1 74599 75027
YP_009222634.1 NC_029065_p36 hypothetical protein phrog_899 unknown function unknown function -1 16378 16614
YP_009222604.1 NC_029065_p6 hypothetical protein singleton unknown function unknown function -1 1810 2094
YP_009222670.1 NC_029065_p72 hypothetical protein phrog_12169 unknown function unknown function -1 36581 36793
YP_009222652.1 NC_029065_p54 hypothetical protein singleton unknown function unknown function -1 24859 25014
YP_009222733.1 NC_029065_p135 hypothetical protein phrog_2686 unknown function unknown function 1 79747 80178
YP_009222712.1 NC_029065_p114 Terminase-like family protein phrog_979 terminase large subunit head and packaging -1 66218 67690
YP_009222646.1 NC_029065_p48 Ribonucleoside-diphosphate reductase NrdZ phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 19876 21606
YP_009222631.1 NC_029065_p33 hypothetical protein phrog_2141 unknown function unknown function -1 14302 15264
YP_009222680.1 NC_029065_p82 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 40769 41914
YP_009222726.1 NC_029065_p128 hypothetical protein phrog_3948 unknown function unknown function 1 76859 77203
YP_009222708.1 NC_029065_p110 hypothetical protein phrog_49 head decoration head and packaging -1 62959 63345
YP_009222727.1 NC_029065_p129 hypothetical protein phrog_10692 unknown function unknown function 1 77200 77421
YP_009222662.1 NC_029065_p64 hypothetical protein singleton unknown function unknown function -1 30532 30660
YP_009222624.1 NC_029065_p26 hypothetical protein phrog_12713 unknown function unknown function -1 12322 12549
YP_009222669.1 NC_029065_p71 hypothetical protein phrog_12645 unknown function unknown function -1 36138 36473
YP_009222640.1 NC_029065_p42 hypothetical protein phrog_899 unknown function unknown function -1 18331 18516
YP_009222716.1 NC_029065_p118 hypothetical protein phrog_11200 unknown function unknown function -1 71283 71408
YP_009222687.1 NC_029065_p89 hypothetical protein phrog_2282 tail fiber protein tail -1 44171 45643
YP_009222653.1 NC_029065_p55 hypothetical protein phrog_4276 unknown function unknown function -1 24986 25276
YP_009222660.1 NC_029065_p62 von Willebrand factor type A domain protein phrog_7371 unknown function unknown function -1 28592 29395
YP_009222764.1 NC_029065_p166 hypothetical protein singleton unknown function unknown function 1 95456 95593
YP_009222619.1 NC_029065_p21 hypothetical protein phrog_5041 unknown function unknown function -1 10311 10493
YP_009222731.1 NC_029065_p133 hypothetical protein phrog_11656 unknown function unknown function 1 78328 78564
YP_009222677.1 NC_029065_p79 hypothetical protein singleton unknown function unknown function -1 39478 39606
YP_009222681.1 NC_029065_p83 hypothetical protein phrog_2834 unknown function unknown function 1 41916 42107
YP_009222694.1 NC_029065_p96 hypothetical protein phrog_196 baseplate hub tail -1 51905 52828
YP_009222742.1 NC_029065_p144 nicotinate phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 85214 86827
YP_009222629.1 NC_029065_p31 hypothetical protein singleton unknown function unknown function -1 13623 13766
YP_009222754.1 NC_029065_p156 General stress protein 16U phrog_5698 unknown function unknown function 1 92231 92806
YP_009222720.1 NC_029065_p122 hypothetical protein phrog_10364 unknown function unknown function -1 73919 74113
YP_009222709.1 NC_029065_p111 hypothetical protein phrog_4103 unknown function unknown function -1 63372 64289
YP_009222702.1 NC_029065_p104 hypothetical protein phrog_205 tail sheath tail -1 58677 59960
YP_009222706.1 NC_029065_p108 hypothetical protein phrog_1732 unknown function unknown function -1 61367 61846
YP_009222718.1 NC_029065_p120 hypothetical protein singleton unknown function unknown function -1 72412 72603
YP_009222757.1 NC_029065_p159 hypothetical protein singleton unknown function unknown function 1 93379 93570
YP_009222761.1 NC_029065_p163 hypothetical protein singleton unknown function unknown function 1 94497 94661
YP_009222692.1 NC_029065_p94 hypothetical protein phrog_120 baseplate wedge subunit tail -1 50773 51138
YP_009222602.1 NC_029065_p4 hypothetical protein singleton unknown function unknown function -1 1316 1507
YP_009222673.1 NC_029065_p75 hypothetical protein phrog_4256 unknown function unknown function -1 38325 38684
YP_009222749.1 NC_029065_p151 hypothetical protein phrog_11764 unknown function unknown function 1 89033 89356
YP_009222639.1 NC_029065_p41 hypothetical protein singleton unknown function unknown function -1 18156 18323
YP_009222703.1 NC_029065_p105 hypothetical protein phrog_4087 unknown function unknown function -1 59972 60541
YP_009222613.1 NC_029065_p15 hypothetical protein phrog_2267 unknown function unknown function -1 6823 7149
YP_009222661.1 NC_029065_p63 hypothetical protein phrog_2544 unknown function unknown function -1 29464 30462
YP_009222705.1 NC_029065_p107 hypothetical protein phrog_222 tail completion or Neck1 protein connector -1 60916 61383
YP_009222667.1 NC_029065_p69 KaiC phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 34064 35974
YP_009222717.1 NC_029065_p119 hypothetical protein phrog_2143 unknown function unknown function -1 71756 72313
YP_009222704.1 NC_029065_p106 hypothetical protein phrog_939 head protein head and packaging -1 60538 60906
YP_009222762.1 NC_029065_p164 Peptide chain release factor 1 phrog_35727 unknown function unknown function 1 94658 95137
YP_009222711.1 NC_029065_p113 hypothetical protein phrog_113 portal protein head and packaging -1 64747 66216
YP_009222721.1 NC_029065_p123 hypothetical protein singleton unknown function unknown function 1 74189 74410
YP_009222678.1 NC_029065_p80 hypothetical protein phrog_464 unknown function unknown function -1 39603 39914
YP_009222732.1 NC_029065_p134 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 78561 79736
YP_009222676.1 NC_029065_p78 hypothetical protein phrog_3754 unknown function unknown function -1 39084 39485
YP_009222696.1 NC_029065_p98 hypothetical protein phrog_817 tail fiber protein tail -1 53183 53986
YP_009222756.1 NC_029065_p158 hypothetical protein phrog_16170 unknown function unknown function 1 93204 93392
YP_009222713.1 NC_029065_p115 hypothetical protein phrog_6994 head fiber protein head and packaging -1 67839 68060
YP_009222730.1 NC_029065_p132 hypothetical protein phrog_16704 unknown function unknown function 1 78006 78317
YP_009222651.1 NC_029065_p53 hypothetical protein phrog_14002 unknown function unknown function -1 24662 24859
YP_009222735.1 NC_029065_p137 Calcineurin-like phosphoesterase superfamily domain protein phrog_547 phosphoesterase other 1 80713 81282
YP_009222628.1 NC_029065_p30 hypothetical protein singleton unknown function unknown function -1 13483 13623
YP_009222635.1 NC_029065_p37 hypothetical protein phrog_17937 unknown function unknown function -1 16614 17021
YP_009222745.1 NC_029065_p147 hypothetical protein phrog_37348 unknown function unknown function 1 87712 88011
YP_009222609.1 NC_029065_p11 hypothetical protein phrog_2554 unknown function unknown function -1 5334 5972
YP_009222672.1 NC_029065_p74 hypothetical protein phrog_13035 unknown function unknown function -1 37918 38316
YP_009222618.1 NC_029065_p20 hypothetical protein phrog_953 HNH endonuclease DNA, RNA and nucleotide metabolism -1 9723 10196
YP_009222668.1 NC_029065_p70 hypothetical protein phrog_13446 unknown function unknown function -1 35971 36141
YP_009222746.1 NC_029065_p148 DNA recombination-mediator protein A phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 88011 88586
YP_009222648.1 NC_029065_p50 hypothetical protein phrog_3506 thymidylate synthase DNA, RNA and nucleotide metabolism -1 22664 23008
YP_009222737.1 NC_029065_p139 RNA ligase phrog_562 RNA ligase and tail fiber protein attachment catalyst tail 1 81505 82404
YP_009222738.1 NC_029065_p140 hypothetical protein phrog_38203 unknown function unknown function 1 82406 82825
YP_009222665.1 NC_029065_p67 hypothetical protein phrog_10599 unknown function unknown function -1 31349 31633
YP_009222623.1 NC_029065_p25 hypothetical protein phrog_4323 unknown function unknown function -1 12170 12325
YP_009222768.1 NC_029065_p170 hypothetical protein phrog_24419 unknown function unknown function -1 97837 98082
YP_009222723.1 NC_029065_p125 hypothetical protein phrog_5067 unknown function unknown function 1 75027 75377
YP_009222725.1 NC_029065_p127 Clp protease phrog_1827 ATP-dependent protease other 1 76186 76788
YP_009222767.1 NC_029065_p169 hypothetical protein phrog_36221 unknown function unknown function -1 96099 96536
YP_009222740.1 NC_029065_p142 Ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 83278 84147
YP_009222719.1 NC_029065_p121 hypothetical protein phrog_3900 unknown function unknown function -1 73441 73761
YP_009222658.1 NC_029065_p60 hypothetical protein phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 27257 28294
YP_009222701.1 NC_029065_p103 hypothetical protein phrog_280 virion structural protein head and packaging -1 58120 58644
YP_009222751.1 NC_029065_p153 Toxic anion resistance protein (TelA) phrog_5890 tellurite resistance moron, auxiliary metabolic gene and host takeover 1 89597 90778
YP_009222741.1 NC_029065_p143 hypothetical protein phrog_26986 unknown function unknown function 1 84158 85021
YP_009222684.1 NC_029065_p86 hypothetical protein phrog_4349 Rz-like spanin lysis -1 42914 43324
YP_009222656.1 NC_029065_p58 hypothetical protein phrog_1985 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26491 27045
YP_009222753.1 NC_029065_p155 Integral membrane protein TerC family protein phrog_7180 membrane protein moron, auxiliary metabolic gene and host takeover 1 91510 92184
YP_009222683.1 NC_029065_p85 hypothetical protein phrog_4172 unknown function unknown function -1 42465 42764
YP_009222650.1 NC_029065_p52 hypothetical protein phrog_19117 unknown function unknown function -1 24024 24665
YP_009222765.1 NC_029065_p167 hypothetical protein singleton unknown function unknown function 1 95590 95820
YP_009222689.1 NC_029065_p91 hypothetical protein phrog_2282 tail fiber protein tail -1 46197 48554
YP_009222698.1 NC_029065_p100 hypothetical protein phrog_1613 tail assembly chaperone tail -1 56629 56988
YP_009222621.1 NC_029065_p23 hypothetical protein phrog_6266 unknown function unknown function -1 10671 11798
YP_009222728.1 NC_029065_p130 hypothetical protein phrog_34443 unknown function unknown function 1 77421 77618
YP_009222632.1 NC_029065_p34 hypothetical protein phrog_28187 unknown function unknown function -1 15276 15566
YP_009222686.1 NC_029065_p88 Lysozyme RrrD phrog_7 endolysin lysis -1 43607 44158
YP_009222607.1 NC_029065_p9 hypothetical protein phrog_9396 unknown function unknown function -1 4524 4808
YP_009222617.1 NC_029065_p19 hypothetical protein phrog_18044 unknown function unknown function -1 9335 9559
YP_009222695.1 NC_029065_p97 hypothetical protein phrog_349 virion structural protein head and packaging -1 52831 53172
YP_009222744.1 NC_029065_p146 Macro domain protein phrog_335 phosphatase other 1 86995 87483
YP_009222736.1 NC_029065_p138 hypothetical protein phrog_5447 unknown function unknown function 1 81282 81503
YP_009222766.1 NC_029065_p168 hypothetical protein phrog_34006 unknown function unknown function 1 95822 96070
YP_009222599.1 NC_029065_p1 hypothetical protein phrog_5680 unknown function unknown function -1 45 542
YP_009222649.1 NC_029065_p51 FAD-dependent thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 23001 23951
YP_009222610.1 NC_029065_p12 hypothetical protein phrog_11538 unknown function unknown function -1 6082 6477
YP_009222642.1 NC_029065_p44 hypothetical protein singleton unknown function unknown function -1 18752 18898
YP_009222770.1 NC_029065_p172 hypothetical protein phrog_28984 unknown function unknown function -1 98522 98704
YP_009222616.1 NC_029065_p18 hypothetical protein phrog_12785 unknown function unknown function -1 7741 8874
YP_009222614.1 NC_029065_p16 hypothetical protein phrog_2267 unknown function unknown function -1 7215 7514
YP_009222605.1 NC_029065_p7 hypothetical protein phrog_4273 unknown function unknown function -1 2164 2664
YP_009222627.1 NC_029065_p29 hypothetical protein phrog_3118 HNH endonuclease DNA, RNA and nucleotide metabolism -1 13089 13481
YP_009222675.1 NC_029065_p77 hypothetical protein phrog_12621 unknown function unknown function -1 38875 39087
YP_009222644.1 NC_029065_p46 hypothetical protein phrog_14187 unknown function unknown function -1 19239 19433
YP_009222734.1 NC_029065_p136 hypothetical protein phrog_990 metal-dependent phosphohydrolase other 1 80237 80713
YP_009222679.1 NC_029065_p81 hypothetical protein phrog_37602 unknown function unknown function 1 40312 40707
YP_009222600.1 NC_029065_p2 hypothetical protein phrog_12215 unknown function unknown function -1 635 805