| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029066 |
Definition |
Pseudomonas phage PS-1 DNA, complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
48666 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
59.83 |
Number of singletons |
15 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009222821.1 | NC_029066_p51 | hypothetical protein | phrog_145 | portal protein | head and packaging | 1 | 25354 | 26706 |
| YP_009222779.1 | NC_029066_p9 | hypothetical protein | phrog_5434 | unknown function | unknown function | -1 | 4038 | 4490 |
| YP_009222834.1 | NC_029066_p64 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 34020 | 34331 |
| YP_009222806.1 | NC_029066_p36 | hypothetical protein | phrog_25658 | unknown function | unknown function | 1 | 18152 | 18328 |
| YP_009222775.1 | NC_029066_p5 | dehydrofolate reductase | singleton | unknown function | unknown function | -1 | 2418 | 2921 |
| YP_009222780.1 | NC_029066_p10 | hypothetical protein | phrog_31907 | unknown function | unknown function | -1 | 4639 | 4932 |
| YP_009222843.1 | NC_029066_p73 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 41051 | 41533 |
| YP_009222796.1 | NC_029066_p26 | hypothetical protein | phrog_3556 | unknown function | unknown function | -1 | 11821 | 12099 |
| YP_009222799.1 | NC_029066_p29 | Cro repressor | phrog_35 | transcriptional repressor | transcription regulation | 1 | 13132 | 13350 |
| YP_009222773.1 | NC_029066_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1389 | 1634 |
| YP_009222787.1 | NC_029066_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7583 | 7822 |
| YP_009222816.1 | NC_029066_p46 | hypothetical protein | phrog_6519 | unknown function | unknown function | 1 | 21959 | 22201 |
| YP_009222797.1 | NC_029066_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12092 | 12355 |
| YP_009222841.1 | NC_029066_p71 | tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 37498 | 40551 |
| YP_009222784.1 | NC_029066_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6650 | 6802 |
| YP_009222811.1 | NC_029066_p41 | hypothetical protein | phrog_3412 | unknown function | unknown function | 1 | 19624 | 20166 |
| YP_009222822.1 | NC_029066_p52 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 26871 | 27461 |
| YP_009222836.1 | NC_029066_p66 | hypothetical protein | phrog_228 | Arc-like repressor | transcription regulation | -1 | 34689 | 35135 |
| YP_009222831.1 | NC_029066_p61 | tail component | phrog_169 | tail completion or Neck1 protein | connector | 1 | 32419 | 32814 |
| YP_009222786.1 | NC_029066_p16 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7207 | 7485 |
| YP_009222789.1 | NC_029066_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8526 | 8885 |
| YP_009222848.1 | NC_029066_p78 | hypothetical protein | phrog_3108 | unknown function | unknown function | 1 | 47484 | 47963 |
| YP_009222791.1 | NC_029066_p21 | hypothetical protein | phrog_1273 | unknown function | unknown function | -1 | 9777 | 10082 |
| YP_009222844.1 | NC_029066_p74 | endopeptidase | phrog_329 | minor tail protein | tail | 1 | 41533 | 41967 |
| YP_009222839.1 | NC_029066_p69 | phage regulatory protein Rha | phrog_1726 | anti-repressor | transcription regulation | 1 | 36390 | 37064 |
| YP_009222826.1 | NC_029066_p56 | hypothetical protein | phrog_784 | unknown function | unknown function | 1 | 29684 | 30430 |
| YP_009222774.1 | NC_029066_p4 | DNA methyltransferase | phrog_363 | DNA methyltransferase | other | -1 | 1672 | 2376 |
| YP_009222818.1 | NC_029066_p48 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 22576 | 23337 |
| YP_009222801.1 | NC_029066_p31 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 15454 | 16359 |
| YP_009222847.1 | NC_029066_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45285 | 47435 |
| YP_009222819.1 | NC_029066_p49 | terminase small subunit | phrog_1206 | terminase small subunit | head and packaging | 1 | 23345 | 23863 |
| YP_009222807.1 | NC_029066_p37 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 18325 | 18654 |
| YP_009222788.1 | NC_029066_p18 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 7819 | 8529 |
| YP_009222803.1 | NC_029066_p33 | DNA methyltransferase | phrog_67 | DNA methyltransferase | other | 1 | 16617 | 17396 |
| YP_009222777.1 | NC_029066_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3285 | 3821 |
| YP_009222804.1 | NC_029066_p34 | NinB DNA recombinase | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 17389 | 17856 |
| YP_009222846.1 | NC_029066_p76 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 44569 | 45156 |
| YP_009222792.1 | NC_029066_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10121 | 10327 |
| YP_009222814.1 | NC_029066_p44 | hypothetical protein | phrog_31408 | unknown function | unknown function | 1 | 21421 | 21735 |
| YP_009222824.1 | NC_029066_p54 | hypothetical protein | phrog_15916 | unknown function | unknown function | 1 | 28556 | 28810 |
| YP_009222817.1 | NC_029066_p47 | hypothetical protein | phrog_30574 | unknown function | unknown function | 1 | 22301 | 22486 |
| YP_009222794.1 | NC_029066_p24 | transcriptional regulator | phrog_3282 | sigma factor | transcription regulation | -1 | 10608 | 10976 |
| YP_009222823.1 | NC_029066_p53 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 27433 | 28548 |
| YP_009222815.1 | NC_029066_p45 | hypothetical protein | phrog_1356 | holin | lysis | 1 | 21732 | 21959 |
| YP_009222810.1 | NC_029066_p40 | restriction alleviation protein Lar | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 19283 | 19627 |
| YP_009222845.1 | NC_029066_p75 | tail protein | phrog_469 | tail protein | tail | 1 | 41921 | 44605 |
| YP_009222771.1 | NC_029066_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 1 | 1194 |
| YP_009222829.1 | NC_029066_p59 | hypothetical protein | phrog_493 | head-tail adaptor Ad1 | connector | 1 | 31662 | 32033 |
| YP_009222800.1 | NC_029066_p30 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 13964 | 15457 |
| YP_009222840.1 | NC_029066_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37152 | 37439 |
| YP_009222813.1 | NC_029066_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21111 | 21326 |
| YP_009222838.1 | NC_029066_p68 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 35413 | 36393 |
| YP_009222798.1 | NC_029066_p28 | CI repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 12357 | 13058 |
| YP_009222808.1 | NC_029066_p38 | hypothetical protein | phrog_30095 | unknown function | unknown function | 1 | 18691 | 18927 |
| YP_009222849.1 | NC_029066_p79 | lysozyme | phrog_2466 | Rz-like spanin | lysis | 1 | 47960 | 48475 |
| YP_009222842.1 | NC_029066_p72 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 40548 | 41054 |
| YP_009222802.1 | NC_029066_p32 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 16360 | 16620 |
| YP_009222835.1 | NC_029066_p65 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 34394 | 34642 |
| YP_009222805.1 | NC_029066_p35 | hypothetical protein | phrog_1588 | unknown function | unknown function | 1 | 17853 | 18155 |
| YP_009222827.1 | NC_029066_p57 | major capsid | phrog_247 | major head protein | head and packaging | 1 | 30443 | 31426 |
| YP_009222809.1 | NC_029066_p39 | endodeoxyribonuclease RusA | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 18924 | 19286 |
| YP_009222795.1 | NC_029066_p25 | hypothetical protein | phrog_2707 | unknown function | unknown function | -1 | 11382 | 11639 |
| YP_009222793.1 | NC_029066_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10387 | 10578 |
| YP_009222776.1 | NC_029066_p6 | hypothetical protein | phrog_5305 | unknown function | unknown function | -1 | 3007 | 3288 |
| YP_009222820.1 | NC_029066_p50 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 23867 | 25351 |
| YP_009222828.1 | NC_029066_p58 | hypothetical protein | phrog_16180 | unknown function | unknown function | 1 | 31473 | 31661 |
| YP_009222772.1 | NC_029066_p2 | hypothetical protein | phrog_9668 | excisionase | integration and excision | -1 | 1035 | 1385 |
| YP_009222837.1 | NC_029066_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35206 | 35343 |
| YP_009222781.1 | NC_029066_p11 | hypothetical protein | phrog_18187 | unknown function | unknown function | -1 | 4983 | 5279 |
| YP_009222782.1 | NC_029066_p12 | recombination exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 5276 | 5905 |
| YP_009222783.1 | NC_029066_p13 | recombination protein Bet | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 5886 | 6623 |
| YP_009222778.1 | NC_029066_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3806 | 3994 |
| YP_009222830.1 | NC_029066_p60 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 32033 | 32416 |
| YP_009222812.1 | NC_029066_p42 | transcriptional regulator | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20268 | 20792 |
| YP_009222825.1 | NC_029066_p55 | DNA-binding protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 28978 | 29562 |
| YP_009222785.1 | NC_029066_p15 | hypothetical protein | phrog_1273 | unknown function | unknown function | -1 | 6799 | 7098 |
| YP_009222790.1 | NC_029066_p20 | hypothetical protein | phrog_5086 | unknown function | unknown function | -1 | 9326 | 9688 |
| YP_009222832.1 | NC_029066_p62 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 32817 | 33224 |
| YP_009222833.1 | NC_029066_p63 | tail protein | phrog_584 | major tail protein | tail | 1 | 33319 | 33966 |