Genomic map of Pseudomonas phage PS-1 (NC_029066)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029066
Definition
Pseudomonas phage PS-1 DNA, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
48666
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
59.83
Number of singletons
15
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009222821.1 NC_029066_p51 hypothetical protein phrog_145 portal protein head and packaging 1 25354 26706
YP_009222779.1 NC_029066_p9 hypothetical protein phrog_5434 unknown function unknown function -1 4038 4490
YP_009222834.1 NC_029066_p64 hypothetical protein phrog_569 tail length tape measure protein tail 1 34020 34331
YP_009222806.1 NC_029066_p36 hypothetical protein phrog_25658 unknown function unknown function 1 18152 18328
YP_009222775.1 NC_029066_p5 dehydrofolate reductase singleton unknown function unknown function -1 2418 2921
YP_009222780.1 NC_029066_p10 hypothetical protein phrog_31907 unknown function unknown function -1 4639 4932
YP_009222843.1 NC_029066_p73 hypothetical protein phrog_396 minor tail protein tail 1 41051 41533
YP_009222796.1 NC_029066_p26 hypothetical protein phrog_3556 unknown function unknown function -1 11821 12099
YP_009222799.1 NC_029066_p29 Cro repressor phrog_35 transcriptional repressor transcription regulation 1 13132 13350
YP_009222773.1 NC_029066_p3 hypothetical protein singleton unknown function unknown function -1 1389 1634
YP_009222787.1 NC_029066_p17 hypothetical protein singleton unknown function unknown function -1 7583 7822
YP_009222816.1 NC_029066_p46 hypothetical protein phrog_6519 unknown function unknown function 1 21959 22201
YP_009222797.1 NC_029066_p27 hypothetical protein singleton unknown function unknown function -1 12092 12355
YP_009222841.1 NC_029066_p71 tape measure protein phrog_339 tail length tape measure protein tail 1 37498 40551
YP_009222784.1 NC_029066_p14 hypothetical protein singleton unknown function unknown function -1 6650 6802
YP_009222811.1 NC_029066_p41 hypothetical protein phrog_3412 unknown function unknown function 1 19624 20166
YP_009222822.1 NC_029066_p52 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 26871 27461
YP_009222836.1 NC_029066_p66 hypothetical protein phrog_228 Arc-like repressor transcription regulation -1 34689 35135
YP_009222831.1 NC_029066_p61 tail component phrog_169 tail completion or Neck1 protein connector 1 32419 32814
YP_009222786.1 NC_029066_p16 hypothetical protein singleton unknown function unknown function -1 7207 7485
YP_009222789.1 NC_029066_p19 hypothetical protein singleton unknown function unknown function -1 8526 8885
YP_009222848.1 NC_029066_p78 hypothetical protein phrog_3108 unknown function unknown function 1 47484 47963
YP_009222791.1 NC_029066_p21 hypothetical protein phrog_1273 unknown function unknown function -1 9777 10082
YP_009222844.1 NC_029066_p74 endopeptidase phrog_329 minor tail protein tail 1 41533 41967
YP_009222839.1 NC_029066_p69 phage regulatory protein Rha phrog_1726 anti-repressor transcription regulation 1 36390 37064
YP_009222826.1 NC_029066_p56 hypothetical protein phrog_784 unknown function unknown function 1 29684 30430
YP_009222774.1 NC_029066_p4 DNA methyltransferase phrog_363 DNA methyltransferase other -1 1672 2376
YP_009222818.1 NC_029066_p48 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 22576 23337
YP_009222801.1 NC_029066_p31 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 15454 16359
YP_009222847.1 NC_029066_p77 hypothetical protein singleton unknown function unknown function 1 45285 47435
YP_009222819.1 NC_029066_p49 terminase small subunit phrog_1206 terminase small subunit head and packaging 1 23345 23863
YP_009222807.1 NC_029066_p37 hypothetical protein phrog_474 phosphofructokinase other 1 18325 18654
YP_009222788.1 NC_029066_p18 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 7819 8529
YP_009222803.1 NC_029066_p33 DNA methyltransferase phrog_67 DNA methyltransferase other 1 16617 17396
YP_009222777.1 NC_029066_p7 hypothetical protein singleton unknown function unknown function -1 3285 3821
YP_009222804.1 NC_029066_p34 NinB DNA recombinase phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 17389 17856
YP_009222846.1 NC_029066_p76 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 44569 45156
YP_009222792.1 NC_029066_p22 hypothetical protein singleton unknown function unknown function -1 10121 10327
YP_009222814.1 NC_029066_p44 hypothetical protein phrog_31408 unknown function unknown function 1 21421 21735
YP_009222824.1 NC_029066_p54 hypothetical protein phrog_15916 unknown function unknown function 1 28556 28810
YP_009222817.1 NC_029066_p47 hypothetical protein phrog_30574 unknown function unknown function 1 22301 22486
YP_009222794.1 NC_029066_p24 transcriptional regulator phrog_3282 sigma factor transcription regulation -1 10608 10976
YP_009222823.1 NC_029066_p53 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 27433 28548
YP_009222815.1 NC_029066_p45 hypothetical protein phrog_1356 holin lysis 1 21732 21959
YP_009222810.1 NC_029066_p40 restriction alleviation protein Lar phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 19283 19627
YP_009222845.1 NC_029066_p75 tail protein phrog_469 tail protein tail 1 41921 44605
YP_009222771.1 NC_029066_p1 integrase phrog_1 integrase integration and excision -1 1 1194
YP_009222829.1 NC_029066_p59 hypothetical protein phrog_493 head-tail adaptor Ad1 connector 1 31662 32033
YP_009222800.1 NC_029066_p30 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 13964 15457
YP_009222840.1 NC_029066_p70 hypothetical protein singleton unknown function unknown function 1 37152 37439
YP_009222813.1 NC_029066_p43 hypothetical protein singleton unknown function unknown function 1 21111 21326
YP_009222838.1 NC_029066_p68 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 35413 36393
YP_009222798.1 NC_029066_p28 CI repressor phrog_4 transcriptional repressor transcription regulation -1 12357 13058
YP_009222808.1 NC_029066_p38 hypothetical protein phrog_30095 unknown function unknown function 1 18691 18927
YP_009222849.1 NC_029066_p79 lysozyme phrog_2466 Rz-like spanin lysis 1 47960 48475
YP_009222842.1 NC_029066_p72 hypothetical protein phrog_384 virion structural protein head and packaging 1 40548 41054
YP_009222802.1 NC_029066_p32 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 16360 16620
YP_009222835.1 NC_029066_p65 hypothetical protein phrog_680 tail length tape measure protein tail 1 34394 34642
YP_009222805.1 NC_029066_p35 hypothetical protein phrog_1588 unknown function unknown function 1 17853 18155
YP_009222827.1 NC_029066_p57 major capsid phrog_247 major head protein head and packaging 1 30443 31426
YP_009222809.1 NC_029066_p39 endodeoxyribonuclease RusA phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 18924 19286
YP_009222795.1 NC_029066_p25 hypothetical protein phrog_2707 unknown function unknown function -1 11382 11639
YP_009222793.1 NC_029066_p23 hypothetical protein singleton unknown function unknown function -1 10387 10578
YP_009222776.1 NC_029066_p6 hypothetical protein phrog_5305 unknown function unknown function -1 3007 3288
YP_009222820.1 NC_029066_p50 terminase large subunit phrog_2 terminase large subunit head and packaging 1 23867 25351
YP_009222828.1 NC_029066_p58 hypothetical protein phrog_16180 unknown function unknown function 1 31473 31661
YP_009222772.1 NC_029066_p2 hypothetical protein phrog_9668 excisionase integration and excision -1 1035 1385
YP_009222837.1 NC_029066_p67 hypothetical protein singleton unknown function unknown function 1 35206 35343
YP_009222781.1 NC_029066_p11 hypothetical protein phrog_18187 unknown function unknown function -1 4983 5279
YP_009222782.1 NC_029066_p12 recombination exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 5276 5905
YP_009222783.1 NC_029066_p13 recombination protein Bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 5886 6623
YP_009222778.1 NC_029066_p8 hypothetical protein singleton unknown function unknown function -1 3806 3994
YP_009222830.1 NC_029066_p60 hypothetical protein phrog_161 head closure Hc1 connector 1 32033 32416
YP_009222812.1 NC_029066_p42 transcriptional regulator phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20268 20792
YP_009222825.1 NC_029066_p55 DNA-binding protein phrog_129 transcriptional regulator transcription regulation 1 28978 29562
YP_009222785.1 NC_029066_p15 hypothetical protein phrog_1273 unknown function unknown function -1 6799 7098
YP_009222790.1 NC_029066_p20 hypothetical protein phrog_5086 unknown function unknown function -1 9326 9688
YP_009222832.1 NC_029066_p62 hypothetical protein phrog_179 tail terminator connector 1 32817 33224
YP_009222833.1 NC_029066_p63 tail protein phrog_584 major tail protein tail 1 33319 33966