| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029070 |
Definition |
Cronobacter phage Dev-CD-23823 complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Cronosvirus; Cronobacter virus DevCD23823. |
DB of origin |
REFSEQ |
Length |
41620 |
Host Name |
Cronobacter |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
53.83 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009223412.1 | NC_029070_p38 | hypothetical protein | phrog_5745 | internal virion protein | head and packaging | 1 | 27186 | 27980 |
| YP_009223395.1 | NC_029070_p21 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 12176 | 12985 |
| YP_009223376.1 | NC_029070_p2 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1462 | 2058 |
| YP_009223393.1 | NC_029070_p19 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8737 | 9648 |
| YP_009223387.1 | NC_029070_p13 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 5726 | 6061 |
| YP_009223389.1 | NC_029070_p15 | hypothetical protein | phrog_11140 | unknown function | unknown function | 1 | 6329 | 6553 |
| YP_009223410.1 | NC_029070_p36 | Tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23951 | 24550 |
| YP_009223408.1 | NC_029070_p34 | Scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 21942 | 22775 |
| YP_009223409.1 | NC_029070_p35 | Major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22846 | 23877 |
| YP_009223383.1 | NC_029070_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4021 | 4569 |
| YP_009223402.1 | NC_029070_p28 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 16712 | 16828 |
| YP_009223404.1 | NC_029070_p30 | hypothetical protein | phrog_5112 | unknown function | unknown function | 1 | 19369 | 19545 |
| YP_009223416.1 | NC_029070_p42 | Type II holin | phrog_920 | holin | lysis | 1 | 36678 | 36869 |
| YP_009223380.1 | NC_029070_p6 | hypothetical protein | phrog_6379 | unknown function | unknown function | 1 | 3337 | 3558 |
| YP_009223375.1 | NC_029070_p1 | hypothetical protein | phrog_9286 | unknown function | unknown function | 1 | 567 | 932 |
| YP_009223385.1 | NC_029070_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4943 | 5239 |
| YP_009223407.1 | NC_029070_p33 | Head to tail connector | phrog_449 | head-tail adaptor | connector | 1 | 20401 | 21930 |
| YP_009223378.1 | NC_029070_p4 | hypothetical protein | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 2416 | 2820 |
| YP_009223391.1 | NC_029070_p17 | DNA helicase, phage-associated | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 7282 | 8526 |
| YP_009223406.1 | NC_029070_p32 | hypothetical protein | phrog_6529 | unknown function | unknown function | 1 | 19964 | 20386 |
| YP_009223401.1 | NC_029070_p27 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 16414 | 16725 |
| YP_009223415.1 | NC_029070_p41 | Tail fiber protein | phrog_6117 | colanic acid degradation | moron, auxiliary metabolic gene and host takeover | 1 | 34085 | 36667 |
| YP_009223420.1 | NC_029070_p46 | Phage endolysin | phrog_7 | endolysin | lysis | 1 | 40110 | 40658 |
| YP_009223422.1 | NC_029070_p48 | hypothetical protein | phrog_13582 | unknown function | unknown function | 1 | 40998 | 41186 |
| YP_009223396.1 | NC_029070_p22 | DNA exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 13003 | 13953 |
| YP_009223384.1 | NC_029070_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4566 | 4943 |
| YP_009223379.1 | NC_029070_p5 | hypothetical protein | phrog_18383 | unknown function | unknown function | 1 | 2823 | 3344 |
| YP_009223382.1 | NC_029070_p8 | hypothetical protein | phrog_5136 | unknown function | unknown function | 1 | 3788 | 4009 |
| YP_009223397.1 | NC_029070_p23 | hypothetical protein | phrog_9561 | unknown function | unknown function | 1 | 13953 | 14366 |
| YP_009223392.1 | NC_029070_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8528 | 8737 |
| YP_009223418.1 | NC_029070_p44 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 37188 | 39131 |
| YP_009223394.1 | NC_029070_p20 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9661 | 12126 |
| YP_009223399.1 | NC_029070_p25 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 14823 | 15860 |
| YP_009223417.1 | NC_029070_p43 | hypothetical protein | phrog_9441 | terminase small subunit | head and packaging | 1 | 36853 | 37188 |
| YP_009223386.1 | NC_029070_p12 | hypothetical protein | phrog_9577 | unknown function | unknown function | 1 | 5236 | 5619 |
| YP_009223405.1 | NC_029070_p31 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 19542 | 19964 |
| YP_009223400.1 | NC_029070_p26 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 16088 | 16417 |
| YP_009223377.1 | NC_029070_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2058 | 2345 |
| YP_009223388.1 | NC_029070_p14 | hypothetical protein | phrog_5965 | unknown function | unknown function | 1 | 6067 | 6324 |
| YP_009223411.1 | NC_029070_p37 | Tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24554 | 27184 |
| YP_009223419.1 | NC_029070_p45 | hypothetical protein | phrog_2973 | Hoc-like head decoration | head and packaging | 1 | 39177 | 40076 |
| YP_009223421.1 | NC_029070_p47 | hypothetical protein | phrog_214 | Rz-like spanin | lysis | 1 | 40655 | 41020 |
| YP_009223413.1 | NC_029070_p39 | hypothetical protein | phrog_3883 | internal virion protein | head and packaging | 1 | 27990 | 30230 |
| YP_009223381.1 | NC_029070_p7 | hypothetical protein | phrog_7319 | unknown function | unknown function | 1 | 3558 | 3719 |
| YP_009223414.1 | NC_029070_p40 | Lytic glycosylase | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30232 | 34014 |
| YP_009223390.1 | NC_029070_p16 | DNA primase | phrog_8634 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 6611 | 7279 |
| YP_009223398.1 | NC_029070_p24 | Phage endonuclease | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 14359 | 14823 |
| YP_009223403.1 | NC_029070_p29 | Phage RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 16828 | 19281 |