| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029071 |
Definition |
Salmonella phage 36, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus; Salmonella virus 36. |
DB of origin |
REFSEQ |
Length |
41085 |
Host Name |
Salmonella typhimurium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
43.52 |
Number of singletons |
40 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009223486.1 | NC_029071_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30800 | 31006 |
| YP_009223506.1 | NC_029071_p84 | hypothetical protein | phrog_9539 | unknown function | unknown function | -1 | 38125 | 38262 |
| YP_009223455.1 | NC_029071_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12663 | 12845 |
| YP_009223450.1 | NC_029071_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10728 | 11306 |
| YP_009223471.1 | NC_029071_p49 | recombination protein | singleton | unknown function | unknown function | 1 | 24284 | 24568 |
| YP_009223511.1 | NC_029071_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39868 | 40218 |
| YP_009223424.1 | NC_029071_p2 | hypothetical protein | phrog_11192 | unknown function | unknown function | 1 | 404 | 706 |
| YP_009223435.1 | NC_029071_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3957 | 4079 |
| YP_009223458.1 | NC_029071_p36 | tail tape measure protein | phrog_20739 | tail length tape measure protein | tail | 1 | 13781 | 14134 |
| YP_009223497.1 | NC_029071_p75 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 35303 | 35467 |
| YP_009223492.1 | NC_029071_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33868 | 33999 |
| YP_009223436.1 | NC_029071_p14 | integrase | singleton | unknown function | unknown function | 1 | 4079 | 4330 |
| YP_009223470.1 | NC_029071_p48 | hypothetical protein | phrog_11265 | tail length tape measure protein | tail | 1 | 23807 | 24097 |
| YP_009223488.1 | NC_029071_p66 | integrase | singleton | unknown function | unknown function | -1 | 31149 | 31406 |
| YP_009223438.1 | NC_029071_p16 | hypothetical protein | phrog_12751 | unknown function | unknown function | 1 | 4682 | 5428 |
| YP_009223434.1 | NC_029071_p12 | major capsid protein | phrog_5573 | terminase large subunit | head and packaging | 1 | 3518 | 4000 |
| YP_009223510.1 | NC_029071_p88 | terminase | singleton | unknown function | unknown function | -1 | 39599 | 39811 |
| YP_009223480.1 | NC_029071_p58 | PblB-type antireceptor | phrog_14572 | tail fiber protein | tail | -1 | 27315 | 28187 |
| YP_009223430.1 | NC_029071_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1881 | 2015 |
| YP_009223469.1 | NC_029071_p47 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 22675 | 23733 |
| YP_009223478.1 | NC_029071_p56 | hypothetical protein | phrog_9288 | unknown function | unknown function | -1 | 26415 | 26906 |
| YP_009223509.1 | NC_029071_p87 | helicase | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 38640 | 39647 |
| YP_009223498.1 | NC_029071_p76 | hypothetical protein | phrog_2817 | unknown function | unknown function | 1 | 35448 | 35690 |
| YP_009223437.1 | NC_029071_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4348 | 4704 |
| YP_009223476.1 | NC_029071_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25879 | 26022 |
| YP_009223456.1 | NC_029071_p34 | minor tail fiber protein | singleton | unknown function | unknown function | 1 | 12953 | 13429 |
| YP_009223459.1 | NC_029071_p37 | tail tape measure protein | singleton | unknown function | unknown function | 1 | 14227 | 14784 |
| YP_009223475.1 | NC_029071_p53 | TerL | singleton | unknown function | unknown function | -1 | 25530 | 25700 |
| YP_009223501.1 | NC_029071_p79 | hypothetical protein | phrog_20762 | unknown function | unknown function | 1 | 36565 | 36897 |
| YP_009223451.1 | NC_029071_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11345 | 11548 |
| YP_009223426.1 | NC_029071_p4 | site-specific recombinase | phrog_303 | unknown function | unknown function | 1 | 919 | 1146 |
| YP_009223452.1 | NC_029071_p30 | hypothetical protein | phrog_584 | major tail protein | tail | 1 | 11563 | 12150 |
| YP_009223481.1 | NC_029071_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28205 | 28573 |
| YP_009223479.1 | NC_029071_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27035 | 27211 |
| YP_009223499.1 | NC_029071_p77 | host specificity protein | singleton | unknown function | unknown function | 1 | 35784 | 36227 |
| YP_009223427.1 | NC_029071_p5 | hypothetical protein | phrog_6666 | unknown function | unknown function | 1 | 1288 | 1491 |
| YP_009223457.1 | NC_029071_p35 | tail fiber | singleton | unknown function | unknown function | 1 | 13476 | 13772 |
| YP_009223502.1 | NC_029071_p80 | hypothetical protein | phrog_2877 | holin | lysis | 1 | 37009 | 37233 |
| YP_009223472.1 | NC_029071_p50 | DNA polymerase I | singleton | unknown function | unknown function | 1 | 24528 | 24806 |
| YP_009223462.1 | NC_029071_p40 | tail tip assembly protein | phrog_18 | minor tail protein | tail | 1 | 16292 | 17050 |
| YP_009223473.1 | NC_029071_p51 | single-strand DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 24845 | 25273 |
| YP_009223464.1 | NC_029071_p42 | tail assembly protein I | phrog_32 | tail assembly protein | tail | 1 | 17892 | 18356 |
| YP_009223507.1 | NC_029071_p85 | DNA replication protein | singleton | unknown function | unknown function | -1 | 38246 | 38470 |
| YP_009223425.1 | NC_029071_p3 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 789 | 917 |
| YP_009223439.1 | NC_029071_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5425 | 5697 |
| YP_009223485.1 | NC_029071_p63 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 29851 | 30741 |
| YP_009223513.1 | NC_029071_p91 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 40531 | 40920 |
| YP_009223428.1 | NC_029071_p6 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 1475 | 1657 |
| YP_009223468.1 | NC_029071_p46 | host-specificity protein | phrog_5269 | unknown function | unknown function | 1 | 21477 | 22214 |
| YP_009223505.1 | NC_029071_p83 | bdr repeat protein | phrog_1804 | Rz-like spanin | lysis | 1 | 37750 | 38112 |
| YP_009223466.1 | NC_029071_p44 | host specificity protein | singleton | unknown function | unknown function | 1 | 19178 | 19540 |
| YP_009223477.1 | NC_029071_p55 | hypothetical protein | phrog_9157 | unknown function | unknown function | -1 | 26036 | 26383 |
| YP_009223494.1 | NC_029071_p72 | tail fiber (host specificity) protein | singleton | unknown function | unknown function | 1 | 34227 | 34451 |
| YP_009223495.1 | NC_029071_p73 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 34487 | 34963 |
| YP_009223483.1 | NC_029071_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29107 | 29283 |
| YP_009223447.1 | NC_029071_p25 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 9644 | 9916 |
| YP_009223484.1 | NC_029071_p62 | DNA helicase II | singleton | unknown function | unknown function | -1 | 29312 | 29659 |
| YP_009223441.1 | NC_029071_p19 | tape measure protein | phrog_12864 | head maturation protease | head and packaging | 1 | 6092 | 6697 |
| YP_009223440.1 | NC_029071_p18 | DNA primase | singleton | unknown function | unknown function | 1 | 5745 | 6095 |
| YP_009223503.1 | NC_029071_p81 | endolysin | singleton | unknown function | unknown function | 1 | 37280 | 37444 |
| YP_009223467.1 | NC_029071_p45 | tail protein | phrog_7997 | tail protein and host specificity | tail | 1 | 19577 | 21115 |
| YP_009223489.1 | NC_029071_p67 | hypothetical protein | phrog_34481 | unknown function | unknown function | 1 | 31496 | 31882 |
| YP_009223448.1 | NC_029071_p26 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 9965 | 10375 |
| YP_009223491.1 | NC_029071_p69 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 33471 | 33875 |
| YP_009223423.1 | NC_029071_p1 | hypothetical protein | phrog_11097 | unknown function | unknown function | 1 | 156 | 407 |
| YP_009223454.1 | NC_029071_p32 | portal protein | singleton | unknown function | unknown function | 1 | 12473 | 12697 |
| YP_009223453.1 | NC_029071_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12303 | 12476 |
| YP_009223442.1 | NC_029071_p20 | hypothetical protein | phrog_36941 | head maturation protease | head and packaging | 1 | 6715 | 7200 |
| YP_009223493.1 | NC_029071_p71 | hypothetical protein | phrog_7420 | unknown function | unknown function | 1 | 33998 | 34225 |
| YP_009223446.1 | NC_029071_p24 | helicase | phrog_264 | major head protein | head and packaging | 1 | 8908 | 9582 |
| YP_009223431.1 | NC_029071_p9 | antirepressor | singleton | unknown function | unknown function | 1 | 2102 | 2347 |
| YP_009223444.1 | NC_029071_p22 | scaffolding protein SbcC-like protein | phrog_1989 | unknown function | unknown function | 1 | 7748 | 8500 |
| YP_009223496.1 | NC_029071_p74 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 34966 | 35229 |
| YP_009223443.1 | NC_029071_p21 | zonula occludens toxin | phrog_1989 | unknown function | unknown function | 1 | 7213 | 7686 |
| YP_009223461.1 | NC_029071_p39 | tail tip assembly protein | phrog_14 | minor tail protein | tail | 1 | 15875 | 16222 |
| YP_009223482.1 | NC_029071_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28570 | 28932 |
| YP_009223429.1 | NC_029071_p7 | hypothetical protein | phrog_5976 | unknown function | unknown function | 1 | 1670 | 1888 |
| YP_009223487.1 | NC_029071_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31033 | 31152 |
| YP_009223512.1 | NC_029071_p90 | hypothetical protein | phrog_12725 | unknown function | unknown function | -1 | 40286 | 40534 |
| YP_009223500.1 | NC_029071_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36227 | 36565 |
| YP_009223508.1 | NC_029071_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38518 | 38637 |
| YP_009223460.1 | NC_029071_p38 | tail tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 14802 | 15875 |
| YP_009223432.1 | NC_029071_p10 | transposase | singleton | unknown function | unknown function | 1 | 2359 | 2499 |
| YP_009223449.1 | NC_029071_p27 | ribonucleoside-triphosphate reductase | phrog_161 | head closure Hc1 | connector | 1 | 10365 | 10709 |
| YP_009223465.1 | NC_029071_p43 | tail protein | phrog_1727 | tail protein and host specificity | tail | 1 | 18440 | 19105 |
| YP_009223445.1 | NC_029071_p23 | PblB-type antireceptor | singleton | unknown function | unknown function | 1 | 8609 | 8851 |
| YP_009223474.1 | NC_029071_p52 | hypothetical protein | phrog_7239 | unknown function | unknown function | -1 | 25286 | 25543 |
| YP_009223433.1 | NC_029071_p11 | hypothetical protein | phrog_4758 | terminase large subunit | head and packaging | 1 | 2511 | 3392 |
| YP_009223463.1 | NC_029071_p41 | tail tip assembly protein | phrog_30 | minor tail protein | tail | 1 | 17076 | 17765 |
| YP_009223490.1 | NC_029071_p68 | DEAD box family helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 31903 | 33468 |
| YP_009223504.1 | NC_029071_p82 | lysozyme | singleton | unknown function | unknown function | 1 | 37441 | 37587 |