Genomic map of Salmonella phage 36 (NC_029071)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029071
Definition
Salmonella phage 36, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus; Salmonella virus 36.
DB of origin
REFSEQ
Length
41085
Host Name
Salmonella typhimurium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
91
%GC
43.52
Number of singletons
40
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009223486.1 NC_029071_p64 hypothetical protein singleton unknown function unknown function -1 30800 31006
YP_009223506.1 NC_029071_p84 hypothetical protein phrog_9539 unknown function unknown function -1 38125 38262
YP_009223455.1 NC_029071_p33 hypothetical protein singleton unknown function unknown function 1 12663 12845
YP_009223450.1 NC_029071_p28 hypothetical protein singleton unknown function unknown function 1 10728 11306
YP_009223471.1 NC_029071_p49 recombination protein singleton unknown function unknown function 1 24284 24568
YP_009223511.1 NC_029071_p89 hypothetical protein singleton unknown function unknown function -1 39868 40218
YP_009223424.1 NC_029071_p2 hypothetical protein phrog_11192 unknown function unknown function 1 404 706
YP_009223435.1 NC_029071_p13 hypothetical protein singleton unknown function unknown function 1 3957 4079
YP_009223458.1 NC_029071_p36 tail tape measure protein phrog_20739 tail length tape measure protein tail 1 13781 14134
YP_009223497.1 NC_029071_p75 hypothetical protein phrog_2180 unknown function unknown function 1 35303 35467
YP_009223492.1 NC_029071_p70 hypothetical protein singleton unknown function unknown function -1 33868 33999
YP_009223436.1 NC_029071_p14 integrase singleton unknown function unknown function 1 4079 4330
YP_009223470.1 NC_029071_p48 hypothetical protein phrog_11265 tail length tape measure protein tail 1 23807 24097
YP_009223488.1 NC_029071_p66 integrase singleton unknown function unknown function -1 31149 31406
YP_009223438.1 NC_029071_p16 hypothetical protein phrog_12751 unknown function unknown function 1 4682 5428
YP_009223434.1 NC_029071_p12 major capsid protein phrog_5573 terminase large subunit head and packaging 1 3518 4000
YP_009223510.1 NC_029071_p88 terminase singleton unknown function unknown function -1 39599 39811
YP_009223480.1 NC_029071_p58 PblB-type antireceptor phrog_14572 tail fiber protein tail -1 27315 28187
YP_009223430.1 NC_029071_p8 hypothetical protein singleton unknown function unknown function 1 1881 2015
YP_009223469.1 NC_029071_p47 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 22675 23733
YP_009223478.1 NC_029071_p56 hypothetical protein phrog_9288 unknown function unknown function -1 26415 26906
YP_009223509.1 NC_029071_p87 helicase phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 38640 39647
YP_009223498.1 NC_029071_p76 hypothetical protein phrog_2817 unknown function unknown function 1 35448 35690
YP_009223437.1 NC_029071_p15 hypothetical protein singleton unknown function unknown function 1 4348 4704
YP_009223476.1 NC_029071_p54 hypothetical protein singleton unknown function unknown function -1 25879 26022
YP_009223456.1 NC_029071_p34 minor tail fiber protein singleton unknown function unknown function 1 12953 13429
YP_009223459.1 NC_029071_p37 tail tape measure protein singleton unknown function unknown function 1 14227 14784
YP_009223475.1 NC_029071_p53 TerL singleton unknown function unknown function -1 25530 25700
YP_009223501.1 NC_029071_p79 hypothetical protein phrog_20762 unknown function unknown function 1 36565 36897
YP_009223451.1 NC_029071_p29 hypothetical protein singleton unknown function unknown function 1 11345 11548
YP_009223426.1 NC_029071_p4 site-specific recombinase phrog_303 unknown function unknown function 1 919 1146
YP_009223452.1 NC_029071_p30 hypothetical protein phrog_584 major tail protein tail 1 11563 12150
YP_009223481.1 NC_029071_p59 hypothetical protein singleton unknown function unknown function -1 28205 28573
YP_009223479.1 NC_029071_p57 hypothetical protein singleton unknown function unknown function -1 27035 27211
YP_009223499.1 NC_029071_p77 host specificity protein singleton unknown function unknown function 1 35784 36227
YP_009223427.1 NC_029071_p5 hypothetical protein phrog_6666 unknown function unknown function 1 1288 1491
YP_009223457.1 NC_029071_p35 tail fiber singleton unknown function unknown function 1 13476 13772
YP_009223502.1 NC_029071_p80 hypothetical protein phrog_2877 holin lysis 1 37009 37233
YP_009223472.1 NC_029071_p50 DNA polymerase I singleton unknown function unknown function 1 24528 24806
YP_009223462.1 NC_029071_p40 tail tip assembly protein phrog_18 minor tail protein tail 1 16292 17050
YP_009223473.1 NC_029071_p51 single-strand DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 24845 25273
YP_009223464.1 NC_029071_p42 tail assembly protein I phrog_32 tail assembly protein tail 1 17892 18356
YP_009223507.1 NC_029071_p85 DNA replication protein singleton unknown function unknown function -1 38246 38470
YP_009223425.1 NC_029071_p3 hypothetical protein phrog_1312 unknown function unknown function 1 789 917
YP_009223439.1 NC_029071_p17 hypothetical protein singleton unknown function unknown function 1 5425 5697
YP_009223485.1 NC_029071_p63 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 29851 30741
YP_009223513.1 NC_029071_p91 hypothetical protein phrog_2684 unknown function unknown function -1 40531 40920
YP_009223428.1 NC_029071_p6 hypothetical protein phrog_2919 unknown function unknown function 1 1475 1657
YP_009223468.1 NC_029071_p46 host-specificity protein phrog_5269 unknown function unknown function 1 21477 22214
YP_009223505.1 NC_029071_p83 bdr repeat protein phrog_1804 Rz-like spanin lysis 1 37750 38112
YP_009223466.1 NC_029071_p44 host specificity protein singleton unknown function unknown function 1 19178 19540
YP_009223477.1 NC_029071_p55 hypothetical protein phrog_9157 unknown function unknown function -1 26036 26383
YP_009223494.1 NC_029071_p72 tail fiber (host specificity) protein singleton unknown function unknown function 1 34227 34451
YP_009223495.1 NC_029071_p73 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 34487 34963
YP_009223483.1 NC_029071_p61 hypothetical protein singleton unknown function unknown function 1 29107 29283
YP_009223447.1 NC_029071_p25 hypothetical protein phrog_2716 unknown function unknown function 1 9644 9916
YP_009223484.1 NC_029071_p62 DNA helicase II singleton unknown function unknown function -1 29312 29659
YP_009223441.1 NC_029071_p19 tape measure protein phrog_12864 head maturation protease head and packaging 1 6092 6697
YP_009223440.1 NC_029071_p18 DNA primase singleton unknown function unknown function 1 5745 6095
YP_009223503.1 NC_029071_p81 endolysin singleton unknown function unknown function 1 37280 37444
YP_009223467.1 NC_029071_p45 tail protein phrog_7997 tail protein and host specificity tail 1 19577 21115
YP_009223489.1 NC_029071_p67 hypothetical protein phrog_34481 unknown function unknown function 1 31496 31882
YP_009223448.1 NC_029071_p26 hypothetical protein phrog_302 virion structural protein head and packaging 1 9965 10375
YP_009223491.1 NC_029071_p69 hypothetical protein phrog_824 unknown function unknown function 1 33471 33875
YP_009223423.1 NC_029071_p1 hypothetical protein phrog_11097 unknown function unknown function 1 156 407
YP_009223454.1 NC_029071_p32 portal protein singleton unknown function unknown function 1 12473 12697
YP_009223453.1 NC_029071_p31 hypothetical protein singleton unknown function unknown function 1 12303 12476
YP_009223442.1 NC_029071_p20 hypothetical protein phrog_36941 head maturation protease head and packaging 1 6715 7200
YP_009223493.1 NC_029071_p71 hypothetical protein phrog_7420 unknown function unknown function 1 33998 34225
YP_009223446.1 NC_029071_p24 helicase phrog_264 major head protein head and packaging 1 8908 9582
YP_009223431.1 NC_029071_p9 antirepressor singleton unknown function unknown function 1 2102 2347
YP_009223444.1 NC_029071_p22 scaffolding protein SbcC-like protein phrog_1989 unknown function unknown function 1 7748 8500
YP_009223496.1 NC_029071_p74 hypothetical protein phrog_2676 unknown function unknown function 1 34966 35229
YP_009223443.1 NC_029071_p21 zonula occludens toxin phrog_1989 unknown function unknown function 1 7213 7686
YP_009223461.1 NC_029071_p39 tail tip assembly protein phrog_14 minor tail protein tail 1 15875 16222
YP_009223482.1 NC_029071_p60 hypothetical protein singleton unknown function unknown function -1 28570 28932
YP_009223429.1 NC_029071_p7 hypothetical protein phrog_5976 unknown function unknown function 1 1670 1888
YP_009223487.1 NC_029071_p65 hypothetical protein singleton unknown function unknown function -1 31033 31152
YP_009223512.1 NC_029071_p90 hypothetical protein phrog_12725 unknown function unknown function -1 40286 40534
YP_009223500.1 NC_029071_p78 hypothetical protein singleton unknown function unknown function 1 36227 36565
YP_009223508.1 NC_029071_p86 hypothetical protein singleton unknown function unknown function -1 38518 38637
YP_009223460.1 NC_029071_p38 tail tape measure protein phrog_24 tail length tape measure protein tail 1 14802 15875
YP_009223432.1 NC_029071_p10 transposase singleton unknown function unknown function 1 2359 2499
YP_009223449.1 NC_029071_p27 ribonucleoside-triphosphate reductase phrog_161 head closure Hc1 connector 1 10365 10709
YP_009223465.1 NC_029071_p43 tail protein phrog_1727 tail protein and host specificity tail 1 18440 19105
YP_009223445.1 NC_029071_p23 PblB-type antireceptor singleton unknown function unknown function 1 8609 8851
YP_009223474.1 NC_029071_p52 hypothetical protein phrog_7239 unknown function unknown function -1 25286 25543
YP_009223433.1 NC_029071_p11 hypothetical protein phrog_4758 terminase large subunit head and packaging 1 2511 3392
YP_009223463.1 NC_029071_p41 tail tip assembly protein phrog_30 minor tail protein tail 1 17076 17765
YP_009223490.1 NC_029071_p68 DEAD box family helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 31903 33468
YP_009223504.1 NC_029071_p82 lysozyme singleton unknown function unknown function 1 37441 37587