Genomic map of Mycobacterium phage Dusk (NC_029079)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029079
Definition
Mycobacterium phage Dusk, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus.
DB of origin
REFSEQ
Length
75339
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
142
%GC
63.01
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009224324.1 NC_029079_p56 hypothetical protein phrog_2463 unknown function unknown function 1 41424 41570
YP_009224379.1 NC_029079_p111 hypothetical protein phrog_8804 unknown function unknown function 1 65455 65664
YP_009224387.1 NC_029079_p119 hypothetical protein phrog_2764 unknown function unknown function 1 68100 68267
YP_009224377.1 NC_029079_p109 DnaQ-like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 64524 65309
YP_009224389.1 NC_029079_p121 hypothetical protein phrog_2296 unknown function unknown function 1 68448 68585
YP_009224396.1 NC_029079_p128 hypothetical protein phrog_2942 unknown function unknown function -1 70184 70438
YP_009224305.1 NC_029079_p37 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism -1 33194 33781
YP_009224328.1 NC_029079_p60 hypothetical protein phrog_3463 unknown function unknown function 1 42713 42820
YP_009224355.1 NC_029079_p87 hypothetical protein phrog_2844 unknown function unknown function 1 54058 54180
YP_009224298.1 NC_029079_p30 hypothetical protein phrog_411 unknown function unknown function 1 28935 29219
YP_009224296.1 NC_029079_p28 hypothetical protein phrog_644 unknown function unknown function 1 28201 28629
YP_009224286.1 NC_029079_p18 major tail subunit phrog_476 major tail protein tail 1 11038 12009
YP_009224380.1 NC_029079_p112 hypothetical protein phrog_6210 unknown function unknown function 1 65661 65750
YP_009224306.1 NC_029079_p38 hypothetical protein phrog_9947 Lsr2-like DNA bridging protein DNA, RNA and nucleotide metabolism -1 33860 34039
YP_009224326.1 NC_029079_p58 hypothetical protein phrog_4633 unknown function unknown function 1 42154 42342
YP_009224390.1 NC_029079_p122 hypothetical protein phrog_2925 unknown function unknown function 1 68582 68761
YP_009224408.1 NC_029079_p140 hypothetical protein phrog_2795 unknown function unknown function -1 73805 74059
YP_009224302.1 NC_029079_p34 lysin B phrog_102 endolysin lysis 1 31510 32367
YP_009224333.1 NC_029079_p65 hypothetical protein phrog_572 unknown function unknown function 1 44734 45144
YP_009224342.1 NC_029079_p74 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48191 48508
YP_009224364.1 NC_029079_p96 DNA methylase phrog_67 DNA methyltransferase other 1 58240 59460
YP_009224290.1 NC_029079_p22 minor tail protein phrog_106 minor tail protein tail 1 17756 19417
YP_009224395.1 NC_029079_p127 hypothetical protein phrog_2579 ParB C-terminal domain DNA, RNA and nucleotide metabolism -1 69676 70065
YP_009224272.1 NC_029079_p4 hypothetical protein phrog_2775 unknown function unknown function 1 601 786
YP_009224340.1 NC_029079_p72 hypothetical protein phrog_2793 unknown function unknown function 1 47551 47784
YP_009224400.1 NC_029079_p132 hypothetical protein phrog_1587 unknown function unknown function -1 71344 71673
YP_009224307.1 NC_029079_p39 hypothetical protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 34042 34428
YP_009224311.1 NC_029079_p43 hypothetical protein phrog_1155 unknown function unknown function -1 35406 35579
YP_009224366.1 NC_029079_p98 CLP protease phrog_94 head maturation protease head and packaging 1 59982 60788
YP_009224399.1 NC_029079_p131 hypothetical protein phrog_1915 unknown function unknown function -1 70871 71329
YP_009224280.1 NC_029079_p12 major capsid protein phrog_10 major head protein head and packaging 1 7587 9080
YP_009224313.1 NC_029079_p45 hypothetical protein phrog_2893 unknown function unknown function -1 35743 35979
YP_009224275.1 NC_029079_p7 hypothetical protein phrog_2202 unknown function unknown function -1 1604 1927
YP_009224331.1 NC_029079_p63 hypothetical protein phrog_762 unknown function unknown function 1 43269 43772
YP_009224310.1 NC_029079_p42 hypothetical protein phrog_722 unknown function unknown function -1 35134 35409
YP_009224385.1 NC_029079_p117 hypothetical protein phrog_2279 unknown function unknown function 1 67246 67458
YP_009224409.1 NC_029079_p141 hypothetical protein phrog_2904 unknown function unknown function 1 74125 74472
YP_009224341.1 NC_029079_p73 hypothetical protein phrog_289 GTP-binding domain other 1 47781 48194
YP_009224378.1 NC_029079_p110 hypothetical protein phrog_3647 unknown function unknown function 1 65306 65458
YP_009224388.1 NC_029079_p120 hypothetical protein phrog_2823 unknown function unknown function 1 68251 68451
YP_009224312.1 NC_029079_p44 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 35579 35746
YP_009224376.1 NC_029079_p108 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 63920 64513
YP_009224270.1 NC_029079_p2 hypothetical protein phrog_4110 unknown function unknown function 1 267 449
YP_009224375.1 NC_029079_p107 hypothetical protein phrog_4826 unknown function unknown function 1 63613 63930
YP_009224289.1 NC_029079_p21 tapemeasure phrog_2723 tail length tape measure protein tail 1 12993 17726
YP_009224352.1 NC_029079_p84 hypothetical protein phrog_2894 unknown function unknown function 1 52320 52514
YP_009224293.1 NC_029079_p25 minor tail protein phrog_346 minor tail protein tail 1 21943 24339
YP_009224386.1 NC_029079_p118 hypothetical protein phrog_2174 unknown function unknown function 1 67642 68103
YP_009224382.1 NC_029079_p114 RecA phrog_97 UvsX-like recombinase other 1 65997 66959
YP_009224315.1 NC_029079_p47 hypothetical protein phrog_2815 unknown function unknown function -1 36206 36352
YP_009224393.1 NC_029079_p125 hypothetical protein phrog_6448 unknown function unknown function 1 69039 69152
YP_009224353.1 NC_029079_p85 polynucleotide kinase phrog_505 polynucleotide kinase other 1 52669 53610
YP_009224343.1 NC_029079_p75 hypothetical protein phrog_1673 unknown function unknown function 1 48498 48734
YP_009224317.1 NC_029079_p49 hypothetical protein phrog_2847 unknown function unknown function -1 37033 37335
YP_009224297.1 NC_029079_p29 HTH DNA binding protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 28626 28802
YP_009224403.1 NC_029079_p135 hypothetical protein phrog_2287 unknown function unknown function -1 72192 72428
YP_009224337.1 NC_029079_p69 hypothetical protein phrog_1389 unknown function unknown function 1 46633 47001
YP_009224360.1 NC_029079_p92 hypothetical protein phrog_889 unknown function unknown function 1 56789 57241
YP_009224292.1 NC_029079_p24 minor tail protein phrog_732 minor tail protein tail 1 21093 21926
YP_009224299.1 NC_029079_p31 lysin A phrog_317 endolysin lysis 1 29293 30795
YP_009224283.1 NC_029079_p15 head-tail connector phrog_1531 head closure connector 1 9917 10252
YP_009224308.1 NC_029079_p40 hypothetical protein phrog_3481 unknown function unknown function -1 34476 34667
YP_009224369.1 NC_029079_p101 hypothetical protein phrog_2757 unknown function unknown function 1 61341 61631
YP_009224367.1 NC_029079_p99 hypothetical protein phrog_1454 unknown function unknown function 1 60790 60987
YP_009224356.1 NC_029079_p88 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 54177 55502
YP_009224406.1 NC_029079_p138 hypothetical protein phrog_1438 unknown function unknown function -1 73393 73566
YP_009224368.1 NC_029079_p100 hypothetical protein phrog_2785 unknown function unknown function 1 60984 61340
YP_009224392.1 NC_029079_p124 hypothetical protein phrog_3016 unknown function unknown function 1 68876 69037
YP_009224278.1 NC_029079_p10 portal protein phrog_12 portal protein head and packaging 1 4843 6402
YP_009224350.1 NC_029079_p82 hypothetical protein phrog_3836 unknown function unknown function 1 51599 51964
YP_009224300.1 NC_029079_p32 holin phrog_526 holin lysis 1 30799 31182
YP_009224327.1 NC_029079_p59 hypothetical protein phrog_2744 unknown function unknown function 1 42389 42694
YP_009224316.1 NC_029079_p48 hypothetical protein phrog_2759 unknown function unknown function -1 36352 36747
YP_009224410.1 NC_029079_p142 hypothetical protein phrog_2762 unknown function unknown function 1 74547 74768
YP_009224281.1 NC_029079_p13 hypothetical protein phrog_2796 head-tail connector protein connector 1 9147 9338
YP_009224336.1 NC_029079_p68 hypothetical protein phrog_2771 unknown function unknown function 1 46163 46633
YP_009224279.1 NC_029079_p11 capsid maturation protease phrog_2753 head maturation protease head and packaging 1 6405 7499
YP_009224401.1 NC_029079_p133 hypothetical protein phrog_21747 unknown function unknown function -1 71685 72071
YP_009224288.1 NC_029079_p20 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 12057 12590
YP_009224394.1 NC_029079_p126 HTH DNA binding protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 69416 69679
YP_009224359.1 NC_029079_p91 hypothetical protein phrog_2853 unknown function unknown function 1 56634 56792
YP_009224301.1 NC_029079_p33 hypothetical protein phrog_2424 unknown function unknown function 1 31175 31513
YP_009224361.1 NC_029079_p93 hypothetical protein phrog_7833 unknown function unknown function 1 57245 57367
YP_009224391.1 NC_029079_p123 hypothetical protein phrog_2897 unknown function unknown function 1 68761 68892
YP_009224325.1 NC_029079_p57 hypothetical protein phrog_2800 unknown function unknown function 1 41567 41845
YP_009224309.1 NC_029079_p41 hypothetical protein phrog_647 unknown function unknown function -1 34670 35137
YP_009224320.1 NC_029079_p52 hypothetical protein phrog_950 unknown function unknown function -1 38823 39596
YP_009224346.1 NC_029079_p78 DNAB-like helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 49706 50968
YP_009224319.1 NC_029079_p51 hypothetical protein phrog_2842 unknown function unknown function 1 38606 38845
YP_009224304.1 NC_029079_p36 NrdH-redoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 32787 33032
YP_009224285.1 NC_029079_p17 hypothetical protein phrog_813 head-tail adaptor connector 1 10607 11011
YP_009224323.1 NC_029079_p55 pentapeptide repeat protein phrog_923 unknown function unknown function 1 40577 41422
YP_009224321.1 NC_029079_p53 DNA binding domain protein phrog_2745 transcriptional repressor transcription regulation -1 39691 40122
YP_009224295.1 NC_029079_p27 hypothetical protein phrog_553 minor tail protein tail 1 27177 28121
YP_009224371.1 NC_029079_p103 HNH homing endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 62000 62290
YP_009224282.1 NC_029079_p14 head-tail connector phrog_442 head-tail adaptor connector 1 9338 9904
YP_009224318.1 NC_029079_p50 integrase phrog_1 integrase integration and excision 1 37586 38467
YP_009224345.1 NC_029079_p77 hypothetical protein phrog_572 unknown function unknown function 1 49378 49713
YP_009224294.1 NC_029079_p26 D-ala-D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 24336 27176
YP_009224354.1 NC_029079_p86 hypothetical protein phrog_2495 unknown function unknown function 1 53717 54085
YP_009224329.1 NC_029079_p61 hypothetical protein phrog_2147 unknown function unknown function 1 42828 43061
YP_009224384.1 NC_029079_p116 hypothetical protein phrog_2755 unknown function unknown function 1 67080 67253
YP_009224339.1 NC_029079_p71 hypothetical protein phrog_1622 unknown function unknown function 1 47375 47548
YP_009224322.1 NC_029079_p54 hypothetical protein singleton unknown function unknown function 1 40275 40580
YP_009224344.1 NC_029079_p76 hypothetical protein phrog_1882 unknown function unknown function 1 48731 49381
YP_009224274.1 NC_029079_p6 terminase small subunit phrog_83 terminase small subunit head and packaging 1 1057 1518
YP_009224269.1 NC_029079_p1 hypothetical protein phrog_3456 unknown function unknown function 1 10 270
YP_009224277.1 NC_029079_p9 hypothetical protein phrog_2845 unknown function unknown function 1 4638 4859
YP_009224372.1 NC_029079_p104 hypothetical protein phrog_2846 unknown function unknown function 1 62744 62968
YP_009224373.1 NC_029079_p105 hypothetical protein phrog_1042 unknown function unknown function 1 62965 63228
YP_009224273.1 NC_029079_p5 hypothetical protein phrog_3858 unknown function unknown function 1 783 1064
YP_009224332.1 NC_029079_p64 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 43769 44737
YP_009224338.1 NC_029079_p70 hypothetical protein phrog_572 unknown function unknown function 1 46998 47375
YP_009224271.1 NC_029079_p3 hypothetical protein phrog_2829 unknown function unknown function 1 446 604
YP_009224365.1 NC_029079_p97 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 59453 59893
YP_009224363.1 NC_029079_p95 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 57737 58243
YP_009224397.1 NC_029079_p129 hypothetical protein phrog_8201 unknown function unknown function -1 70435 70509
YP_009224349.1 NC_029079_p81 hypothetical protein phrog_2747 unknown function unknown function 1 51385 51606
YP_009224358.1 NC_029079_p90 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 56357 56617
YP_009224330.1 NC_029079_p62 hypothetical protein phrog_2221 unknown function unknown function 1 43061 43222
YP_009224335.1 NC_029079_p67 hypothetical protein phrog_2750 unknown function unknown function 1 45852 46163
YP_009224334.1 NC_029079_p66 ERF-like protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 45137 45859
YP_009224404.1 NC_029079_p136 hypothetical protein phrog_2883 unknown function unknown function -1 72444 72992
YP_009224276.1 NC_029079_p8 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1963 4626
YP_009224284.1 NC_029079_p16 head-tail connector phrog_2805 minor tail protein tail 1 10249 10629
YP_009224362.1 NC_029079_p94 hypothetical protein phrog_2788 unknown function unknown function 1 57369 57704
YP_009224351.1 NC_029079_p83 holliday junction resolvase phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 51961 52323
YP_009224374.1 NC_029079_p106 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 63239 63613
YP_009224314.1 NC_029079_p46 hypothetical protein phrog_2702 unknown function unknown function -1 35972 36187
YP_009224405.1 NC_029079_p137 hypothetical protein phrog_3174 unknown function unknown function -1 72996 73388
YP_009224398.1 NC_029079_p130 hypothetical protein phrog_3034 unknown function unknown function -1 70506 70874
YP_009224357.1 NC_029079_p89 HTH DNA binding protein phrog_1590 unknown function unknown function 1 55557 56360
YP_009224303.1 NC_029079_p35 hypothetical protein phrog_726 unknown function unknown function 1 32364 32780
YP_009224402.1 NC_029079_p134 hypothetical protein phrog_3730 unknown function unknown function -1 72077 72202
YP_009224287.1 NC_029079_p19 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 12057 13000
YP_009224347.1 NC_029079_p79 hypothetical protein phrog_1091 unknown function unknown function 1 50965 51153
YP_009224348.1 NC_029079_p80 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 51135 51410
YP_009224383.1 NC_029079_p115 hypothetical protein phrog_2965 unknown function unknown function 1 66956 67093
YP_009224291.1 NC_029079_p23 minor tail protein phrog_110 minor tail protein tail 1 19405 21084
YP_009224370.1 NC_029079_p102 HTH DNA binding protein phrog_1969 unknown function unknown function 1 61636 61947
YP_009224381.1 NC_029079_p113 hypothetical protein phrog_1941 unknown function unknown function 1 65747 65989
YP_009224407.1 NC_029079_p139 hypothetical protein phrog_2772 unknown function unknown function -1 73563 73808