| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029079 |
Definition |
Mycobacterium phage Dusk, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
75339 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
142 |
%GC |
63.01 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009224324.1 | NC_029079_p56 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 41424 | 41570 |
| YP_009224379.1 | NC_029079_p111 | hypothetical protein | phrog_8804 | unknown function | unknown function | 1 | 65455 | 65664 |
| YP_009224387.1 | NC_029079_p119 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68100 | 68267 |
| YP_009224377.1 | NC_029079_p109 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64524 | 65309 |
| YP_009224389.1 | NC_029079_p121 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68448 | 68585 |
| YP_009224396.1 | NC_029079_p128 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70184 | 70438 |
| YP_009224305.1 | NC_029079_p37 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33194 | 33781 |
| YP_009224328.1 | NC_029079_p60 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 42713 | 42820 |
| YP_009224355.1 | NC_029079_p87 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54058 | 54180 |
| YP_009224298.1 | NC_029079_p30 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28935 | 29219 |
| YP_009224296.1 | NC_029079_p28 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28201 | 28629 |
| YP_009224286.1 | NC_029079_p18 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 11038 | 12009 |
| YP_009224380.1 | NC_029079_p112 | hypothetical protein | phrog_6210 | unknown function | unknown function | 1 | 65661 | 65750 |
| YP_009224306.1 | NC_029079_p38 | hypothetical protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 33860 | 34039 |
| YP_009224326.1 | NC_029079_p58 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 42154 | 42342 |
| YP_009224390.1 | NC_029079_p122 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68582 | 68761 |
| YP_009224408.1 | NC_029079_p140 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 73805 | 74059 |
| YP_009224302.1 | NC_029079_p34 | lysin B | phrog_102 | endolysin | lysis | 1 | 31510 | 32367 |
| YP_009224333.1 | NC_029079_p65 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 44734 | 45144 |
| YP_009224342.1 | NC_029079_p74 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48191 | 48508 |
| YP_009224364.1 | NC_029079_p96 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 58240 | 59460 |
| YP_009224290.1 | NC_029079_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17756 | 19417 |
| YP_009224395.1 | NC_029079_p127 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69676 | 70065 |
| YP_009224272.1 | NC_029079_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| YP_009224340.1 | NC_029079_p72 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 47551 | 47784 |
| YP_009224400.1 | NC_029079_p132 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71344 | 71673 |
| YP_009224307.1 | NC_029079_p39 | hypothetical protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34042 | 34428 |
| YP_009224311.1 | NC_029079_p43 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 35406 | 35579 |
| YP_009224366.1 | NC_029079_p98 | CLP protease | phrog_94 | head maturation protease | head and packaging | 1 | 59982 | 60788 |
| YP_009224399.1 | NC_029079_p131 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70871 | 71329 |
| YP_009224280.1 | NC_029079_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7587 | 9080 |
| YP_009224313.1 | NC_029079_p45 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 35743 | 35979 |
| YP_009224275.1 | NC_029079_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1604 | 1927 |
| YP_009224331.1 | NC_029079_p63 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 43269 | 43772 |
| YP_009224310.1 | NC_029079_p42 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35134 | 35409 |
| YP_009224385.1 | NC_029079_p117 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67246 | 67458 |
| YP_009224409.1 | NC_029079_p141 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74125 | 74472 |
| YP_009224341.1 | NC_029079_p73 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 47781 | 48194 |
| YP_009224378.1 | NC_029079_p110 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 65306 | 65458 |
| YP_009224388.1 | NC_029079_p120 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68251 | 68451 |
| YP_009224312.1 | NC_029079_p44 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35579 | 35746 |
| YP_009224376.1 | NC_029079_p108 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 63920 | 64513 |
| YP_009224270.1 | NC_029079_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_009224375.1 | NC_029079_p107 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 63613 | 63930 |
| YP_009224289.1 | NC_029079_p21 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 12993 | 17726 |
| YP_009224352.1 | NC_029079_p84 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52320 | 52514 |
| YP_009224293.1 | NC_029079_p25 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 21943 | 24339 |
| YP_009224386.1 | NC_029079_p118 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67642 | 68103 |
| YP_009224382.1 | NC_029079_p114 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 65997 | 66959 |
| YP_009224315.1 | NC_029079_p47 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36206 | 36352 |
| YP_009224393.1 | NC_029079_p125 | hypothetical protein | phrog_6448 | unknown function | unknown function | 1 | 69039 | 69152 |
| YP_009224353.1 | NC_029079_p85 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 52669 | 53610 |
| YP_009224343.1 | NC_029079_p75 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 48498 | 48734 |
| YP_009224317.1 | NC_029079_p49 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37033 | 37335 |
| YP_009224297.1 | NC_029079_p29 | HTH DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28626 | 28802 |
| YP_009224403.1 | NC_029079_p135 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72192 | 72428 |
| YP_009224337.1 | NC_029079_p69 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46633 | 47001 |
| YP_009224360.1 | NC_029079_p92 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56789 | 57241 |
| YP_009224292.1 | NC_029079_p24 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21093 | 21926 |
| YP_009224299.1 | NC_029079_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 29293 | 30795 |
| YP_009224283.1 | NC_029079_p15 | head-tail connector | phrog_1531 | head closure | connector | 1 | 9917 | 10252 |
| YP_009224308.1 | NC_029079_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34476 | 34667 |
| YP_009224369.1 | NC_029079_p101 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61341 | 61631 |
| YP_009224367.1 | NC_029079_p99 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 60790 | 60987 |
| YP_009224356.1 | NC_029079_p88 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54177 | 55502 |
| YP_009224406.1 | NC_029079_p138 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73393 | 73566 |
| YP_009224368.1 | NC_029079_p100 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60984 | 61340 |
| YP_009224392.1 | NC_029079_p124 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68876 | 69037 |
| YP_009224278.1 | NC_029079_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4843 | 6402 |
| YP_009224350.1 | NC_029079_p82 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 51599 | 51964 |
| YP_009224300.1 | NC_029079_p32 | holin | phrog_526 | holin | lysis | 1 | 30799 | 31182 |
| YP_009224327.1 | NC_029079_p59 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 42389 | 42694 |
| YP_009224316.1 | NC_029079_p48 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 36352 | 36747 |
| YP_009224410.1 | NC_029079_p142 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 74547 | 74768 |
| YP_009224281.1 | NC_029079_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 9147 | 9338 |
| YP_009224336.1 | NC_029079_p68 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46163 | 46633 |
| YP_009224279.1 | NC_029079_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6405 | 7499 |
| YP_009224401.1 | NC_029079_p133 | hypothetical protein | phrog_21747 | unknown function | unknown function | -1 | 71685 | 72071 |
| YP_009224288.1 | NC_029079_p20 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12057 | 12590 |
| YP_009224394.1 | NC_029079_p126 | HTH DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69416 | 69679 |
| YP_009224359.1 | NC_029079_p91 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 56634 | 56792 |
| YP_009224301.1 | NC_029079_p33 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31175 | 31513 |
| YP_009224361.1 | NC_029079_p93 | hypothetical protein | phrog_7833 | unknown function | unknown function | 1 | 57245 | 57367 |
| YP_009224391.1 | NC_029079_p123 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68761 | 68892 |
| YP_009224325.1 | NC_029079_p57 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 41567 | 41845 |
| YP_009224309.1 | NC_029079_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34670 | 35137 |
| YP_009224320.1 | NC_029079_p52 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 38823 | 39596 |
| YP_009224346.1 | NC_029079_p78 | DNAB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49706 | 50968 |
| YP_009224319.1 | NC_029079_p51 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 38606 | 38845 |
| YP_009224304.1 | NC_029079_p36 | NrdH-redoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 32787 | 33032 |
| YP_009224285.1 | NC_029079_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10607 | 11011 |
| YP_009224323.1 | NC_029079_p55 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 40577 | 41422 |
| YP_009224321.1 | NC_029079_p53 | DNA binding domain protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 39691 | 40122 |
| YP_009224295.1 | NC_029079_p27 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27177 | 28121 |
| YP_009224371.1 | NC_029079_p103 | HNH homing endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62000 | 62290 |
| YP_009224282.1 | NC_029079_p14 | head-tail connector | phrog_442 | head-tail adaptor | connector | 1 | 9338 | 9904 |
| YP_009224318.1 | NC_029079_p50 | integrase | phrog_1 | integrase | integration and excision | 1 | 37586 | 38467 |
| YP_009224345.1 | NC_029079_p77 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 49378 | 49713 |
| YP_009224294.1 | NC_029079_p26 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24336 | 27176 |
| YP_009224354.1 | NC_029079_p86 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 53717 | 54085 |
| YP_009224329.1 | NC_029079_p61 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 42828 | 43061 |
| YP_009224384.1 | NC_029079_p116 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67080 | 67253 |
| YP_009224339.1 | NC_029079_p71 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 47375 | 47548 |
| YP_009224322.1 | NC_029079_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40275 | 40580 |
| YP_009224344.1 | NC_029079_p76 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 48731 | 49381 |
| YP_009224274.1 | NC_029079_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| YP_009224269.1 | NC_029079_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 10 | 270 |
| YP_009224277.1 | NC_029079_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4638 | 4859 |
| YP_009224372.1 | NC_029079_p104 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62744 | 62968 |
| YP_009224373.1 | NC_029079_p105 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62965 | 63228 |
| YP_009224273.1 | NC_029079_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 783 | 1064 |
| YP_009224332.1 | NC_029079_p64 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43769 | 44737 |
| YP_009224338.1 | NC_029079_p70 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46998 | 47375 |
| YP_009224271.1 | NC_029079_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| YP_009224365.1 | NC_029079_p97 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59453 | 59893 |
| YP_009224363.1 | NC_029079_p95 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57737 | 58243 |
| YP_009224397.1 | NC_029079_p129 | hypothetical protein | phrog_8201 | unknown function | unknown function | -1 | 70435 | 70509 |
| YP_009224349.1 | NC_029079_p81 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 51385 | 51606 |
| YP_009224358.1 | NC_029079_p90 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 56357 | 56617 |
| YP_009224330.1 | NC_029079_p62 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43061 | 43222 |
| YP_009224335.1 | NC_029079_p67 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 45852 | 46163 |
| YP_009224334.1 | NC_029079_p66 | ERF-like protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45137 | 45859 |
| YP_009224404.1 | NC_029079_p136 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72444 | 72992 |
| YP_009224276.1 | NC_029079_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1963 | 4626 |
| YP_009224284.1 | NC_029079_p16 | head-tail connector | phrog_2805 | minor tail protein | tail | 1 | 10249 | 10629 |
| YP_009224362.1 | NC_029079_p94 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57369 | 57704 |
| YP_009224351.1 | NC_029079_p83 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51961 | 52323 |
| YP_009224374.1 | NC_029079_p106 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63239 | 63613 |
| YP_009224314.1 | NC_029079_p46 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 35972 | 36187 |
| YP_009224405.1 | NC_029079_p137 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 72996 | 73388 |
| YP_009224398.1 | NC_029079_p130 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70506 | 70874 |
| YP_009224357.1 | NC_029079_p89 | HTH DNA binding protein | phrog_1590 | unknown function | unknown function | 1 | 55557 | 56360 |
| YP_009224303.1 | NC_029079_p35 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32364 | 32780 |
| YP_009224402.1 | NC_029079_p134 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72077 | 72202 |
| YP_009224287.1 | NC_029079_p19 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 12057 | 13000 |
| YP_009224347.1 | NC_029079_p79 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50965 | 51153 |
| YP_009224348.1 | NC_029079_p80 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51135 | 51410 |
| YP_009224383.1 | NC_029079_p115 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66956 | 67093 |
| YP_009224291.1 | NC_029079_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19405 | 21084 |
| YP_009224370.1 | NC_029079_p102 | HTH DNA binding protein | phrog_1969 | unknown function | unknown function | 1 | 61636 | 61947 |
| YP_009224381.1 | NC_029079_p113 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65747 | 65989 |
| YP_009224407.1 | NC_029079_p139 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73563 | 73808 |