| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029093 |
Definition |
Mycobacterium phage Mindy, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
75796 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
147 |
%GC |
62.96 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009225360.1 | NC_029093_p73 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 46760 | 46933 |
| YP_009225374.1 | NC_029093_p87 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 52012 | 52953 |
| YP_009225424.1 | NC_029093_p137 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72203 | 72328 |
| YP_009225307.1 | NC_029093_p20 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12248 | 12709 |
| YP_009225300.1 | NC_029093_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7705 | 9198 |
| YP_009225325.1 | NC_029093_p38 | hypothetical protein | phrog_27547 | unknown function | unknown function | -1 | 33198 | 33317 |
| YP_009225294.1 | NC_029093_p7 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 1382 | 1726 |
| YP_009225428.1 | NC_029093_p141 | hypothetical protein | phrog_7581 | unknown function | unknown function | -1 | 73521 | 73730 |
| YP_009225421.1 | NC_029093_p134 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71014 | 71343 |
| YP_009225426.1 | NC_029093_p139 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72570 | 73058 |
| YP_009225379.1 | NC_029093_p92 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 55700 | 55960 |
| YP_009225372.1 | NC_029093_p85 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51283 | 51666 |
| YP_009225315.1 | NC_029093_p28 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 27302 | 28246 |
| YP_009225317.1 | NC_029093_p30 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28752 | 28928 |
| YP_009225370.1 | NC_029093_p83 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 50767 | 50988 |
| YP_009225382.1 | NC_029093_p95 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56588 | 57031 |
| YP_009225301.1 | NC_029093_p14 | head-to-tail connector | phrog_2796 | head-tail connector protein | connector | 1 | 9266 | 9457 |
| YP_009225339.1 | NC_029093_p52 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 37991 | 38230 |
| YP_009225335.1 | NC_029093_p48 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 35590 | 35736 |
| YP_009225404.1 | NC_029093_p117 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66620 | 66757 |
| YP_009225316.1 | NC_029093_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28327 | 28755 |
| YP_009225412.1 | NC_029093_p125 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68246 | 68425 |
| YP_009225293.1 | NC_029093_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 997 | 1389 |
| YP_009225290.1 | NC_029093_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| YP_009225396.1 | NC_029093_p109 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 63277 | 63594 |
| YP_009225355.1 | NC_029093_p68 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44522 | 45244 |
| YP_009225304.1 | NC_029093_p17 | head-to-tail connector | phrog_2805 | minor tail protein | tail | 1 | 10368 | 10748 |
| YP_009225324.1 | NC_029093_p37 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 32913 | 33158 |
| YP_009225384.1 | NC_029093_p97 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57365 | 57907 |
| YP_009225394.1 | NC_029093_p107 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62629 | 62892 |
| YP_009225343.1 | NC_029093_p56 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 39828 | 39965 |
| YP_009225405.1 | NC_029093_p118 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66744 | 66917 |
| YP_009225352.1 | NC_029093_p65 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 42828 | 43157 |
| YP_009225419.1 | NC_029093_p132 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70170 | 70538 |
| YP_009225296.1 | NC_029093_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2174 | 4837 |
| YP_009225338.1 | NC_029093_p51 | integrase | phrog_1 | integrase | integration and excision | 1 | 36971 | 37852 |
| YP_009225295.1 | NC_029093_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1827 | 2138 |
| YP_009225306.1 | NC_029093_p19 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 11157 | 12128 |
| YP_009225433.1 | NC_029093_p146 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74582 | 74929 |
| YP_009225328.1 | NC_029093_p41 | hypothetical protein | phrog_30616 | unknown function | unknown function | -1 | 33894 | 34136 |
| YP_009225402.1 | NC_029093_p115 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65411 | 65653 |
| YP_009225308.1 | NC_029093_p21 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 12841 | 13119 |
| YP_009225347.1 | NC_029093_p60 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 41539 | 41727 |
| YP_009225383.1 | NC_029093_p96 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57033 | 57368 |
| YP_009225320.1 | NC_029093_p33 | holin | phrog_526 | holin | lysis | 1 | 30925 | 31308 |
| YP_009225431.1 | NC_029093_p144 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74146 | 74349 |
| YP_009225373.1 | NC_029093_p86 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 51663 | 51857 |
| YP_009225381.1 | NC_029093_p94 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56132 | 56584 |
| YP_009225389.1 | NC_029093_p102 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60648 | 61004 |
| YP_009225375.1 | NC_029093_p88 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 53060 | 53428 |
| YP_009225321.1 | NC_029093_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31301 | 31639 |
| YP_009225386.1 | NC_029093_p99 | single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59117 | 59557 |
| YP_009225377.1 | NC_029093_p90 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 53520 | 54845 |
| YP_009225363.1 | NC_029093_p76 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47576 | 47893 |
| YP_009225292.1 | NC_029093_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 783 | 935 |
| YP_009225341.1 | NC_029093_p54 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 39076 | 39507 |
| YP_009225323.1 | NC_029093_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32490 | 32906 |
| YP_009225385.1 | NC_029093_p98 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 57904 | 59124 |
| YP_009225336.1 | NC_029093_p49 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 35736 | 36131 |
| YP_009225434.1 | NC_029093_p147 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75004 | 75225 |
| YP_009225344.1 | NC_029093_p57 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 39962 | 40807 |
| YP_009225313.1 | NC_029093_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22062 | 24458 |
| YP_009225395.1 | NC_029093_p108 | hydrolase | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 62903 | 63277 |
| YP_009225309.1 | NC_029093_p22 | tapemeasure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13112 | 17845 |
| YP_009225302.1 | NC_029093_p15 | head-to-tail connector | phrog_442 | head-tail adaptor | connector | 1 | 9457 | 10023 |
| YP_009225299.1 | NC_029093_p12 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6616 | 7617 |
| YP_009225416.1 | NC_029093_p129 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69340 | 69729 |
| YP_009225333.1 | NC_029093_p46 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 35127 | 35363 |
| YP_009225331.1 | NC_029093_p44 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 34790 | 34963 |
| YP_009225359.1 | NC_029093_p72 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46383 | 46760 |
| YP_009225422.1 | NC_029093_p135 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 71348 | 71866 |
| YP_009225305.1 | NC_029093_p18 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 10726 | 11130 |
| YP_009225346.1 | NC_029093_p59 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 40952 | 41230 |
| YP_009225408.1 | NC_029093_p121 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67306 | 67767 |
| YP_009225349.1 | NC_029093_p62 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 42098 | 42205 |
| YP_009225340.1 | NC_029093_p53 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 38208 | 38981 |
| YP_009225288.1 | NC_029093_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 10 | 270 |
| YP_009225362.1 | NC_029093_p75 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 47166 | 47579 |
| YP_009225413.1 | NC_029093_p126 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68425 | 68556 |
| YP_009225387.1 | NC_029093_p100 | ClpP protease | phrog_94 | head maturation protease | head and packaging | 1 | 59673 | 60452 |
| YP_009225330.1 | NC_029093_p43 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 34317 | 34793 |
| YP_009225326.1 | NC_029093_p39 | hypothetical protein | phrog_10154 | unknown function | unknown function | -1 | 33298 | 33444 |
| YP_009225390.1 | NC_029093_p103 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61005 | 61295 |
| YP_009225418.1 | NC_029093_p131 | hypothetical protein | phrog_8201 | unknown function | unknown function | -1 | 70099 | 70173 |
| YP_009225406.1 | NC_029093_p119 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 66892 | 67122 |
| YP_009225367.1 | NC_029093_p80 | DnaB helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49142 | 50350 |
| YP_009225312.1 | NC_029093_p25 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21212 | 22045 |
| YP_009225361.1 | NC_029093_p74 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 46936 | 47169 |
| YP_009225369.1 | NC_029093_p82 | WhiB | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 50532 | 50792 |
| YP_009225365.1 | NC_029093_p78 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 48116 | 48766 |
| YP_009225432.1 | NC_029093_p145 | hypothetical protein | phrog_8479 | unknown function | unknown function | -1 | 74353 | 74547 |
| YP_009225415.1 | NC_029093_p128 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69080 | 69343 |
| YP_009225345.1 | NC_029093_p58 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 40809 | 40955 |
| YP_009225322.1 | NC_029093_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 31636 | 32493 |
| YP_009225303.1 | NC_029093_p16 | head-to-tail connector | phrog_1531 | head closure | connector | 1 | 10036 | 10371 |
| YP_009225407.1 | NC_029093_p120 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67103 | 67357 |
| YP_009225371.1 | NC_029093_p84 | hypothetical protein | phrog_9963 | unknown function | unknown function | 1 | 50981 | 51307 |
| YP_009225358.1 | NC_029093_p71 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46018 | 46386 |
| YP_009225401.1 | NC_029093_p114 | hypothetical protein | phrog_6210 | unknown function | unknown function | 1 | 65325 | 65414 |
| YP_009225289.1 | NC_029093_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_009225368.1 | NC_029093_p81 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50347 | 50535 |
| YP_009225364.1 | NC_029093_p77 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 47883 | 48119 |
| YP_009225399.1 | NC_029093_p112 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 64970 | 65122 |
| YP_009225425.1 | NC_029093_p138 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72318 | 72554 |
| YP_009225351.1 | NC_029093_p64 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 42446 | 42607 |
| YP_009225427.1 | NC_029093_p140 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73098 | 73493 |
| YP_009225417.1 | NC_029093_p130 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 69848 | 70102 |
| YP_009225297.1 | NC_029093_p10 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4849 | 5070 |
| YP_009225310.1 | NC_029093_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17875 | 19536 |
| YP_009225420.1 | NC_029093_p133 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70535 | 70999 |
| YP_009225354.1 | NC_029093_p67 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 44119 | 44529 |
| YP_009225410.1 | NC_029093_p123 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 67915 | 68115 |
| YP_009225380.1 | NC_029093_p93 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 55977 | 56135 |
| YP_009225414.1 | NC_029093_p127 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68540 | 68701 |
| YP_009225342.1 | NC_029093_p55 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 39733 | 39831 |
| YP_009225430.1 | NC_029093_p143 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73913 | 74140 |
| YP_009225329.1 | NC_029093_p42 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34126 | 34320 |
| YP_009225350.1 | NC_029093_p63 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 42213 | 42446 |
| YP_009225423.1 | NC_029093_p136 | hypothetical protein | phrog_8217 | unknown function | unknown function | -1 | 71887 | 72213 |
| YP_009225332.1 | NC_029093_p45 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 34963 | 35130 |
| YP_009225378.1 | NC_029093_p91 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 54882 | 55703 |
| YP_009225356.1 | NC_029093_p69 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 45237 | 45548 |
| YP_009225319.1 | NC_029093_p32 | lysin A | phrog_317 | endolysin | lysis | 1 | 29488 | 30921 |
| YP_009225314.1 | NC_029093_p27 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24455 | 27301 |
| YP_009225429.1 | NC_029093_p142 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73736 | 73909 |
| YP_009225393.1 | NC_029093_p106 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62336 | 62632 |
| YP_009225327.1 | NC_029093_p40 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33449 | 33835 |
| YP_009225398.1 | NC_029093_p111 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64188 | 64973 |
| YP_009225400.1 | NC_029093_p113 | hypothetical protein | phrog_8804 | unknown function | unknown function | 1 | 65119 | 65328 |
| YP_009225357.1 | NC_029093_p70 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 45548 | 46018 |
| YP_009225388.1 | NC_029093_p101 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 60454 | 60651 |
| YP_009225392.1 | NC_029093_p105 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61664 | 61954 |
| YP_009225311.1 | NC_029093_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19608 | 21203 |
| YP_009225366.1 | NC_029093_p79 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48763 | 49095 |
| YP_009225403.1 | NC_029093_p116 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 65661 | 66623 |
| YP_009225391.1 | NC_029093_p104 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61300 | 61611 |
| YP_009225397.1 | NC_029093_p110 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 63584 | 64177 |
| YP_009225298.1 | NC_029093_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5057 | 6613 |
| YP_009225337.1 | NC_029093_p50 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 36418 | 36720 |
| YP_009225411.1 | NC_029093_p124 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68112 | 68249 |
| YP_009225409.1 | NC_029093_p122 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 67764 | 67931 |
| YP_009225348.1 | NC_029093_p61 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 41774 | 42079 |
| YP_009225291.1 | NC_029093_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| YP_009225334.1 | NC_029093_p47 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 35356 | 35571 |
| YP_009225376.1 | NC_029093_p89 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 53401 | 53523 |
| YP_009225318.1 | NC_029093_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29061 | 29345 |
| YP_009225353.1 | NC_029093_p66 | ERF protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43154 | 44122 |