| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029097 |
Definition |
Rhodobacter phage RcTitan, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Titanvirus. |
DB of origin |
REFSEQ |
Length |
44496 |
Host Name |
Rhodobacter capsulatus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
55.13 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009225726.1 | NC_029097_p61 | hypothetical protein | phrog_7597 | unknown function | unknown function | 1 | 43633 | 44310 |
| YP_009225690.1 | NC_029097_p25 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 19918 | 20121 |
| YP_009225701.1 | NC_029097_p36 | endonuclease | singleton | unknown function | unknown function | 1 | 32258 | 32764 |
| YP_009225696.1 | NC_029097_p31 | exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28530 | 29513 |
| YP_009225680.1 | NC_029097_p15 | head-to-tail joining protein | phrog_161 | head closure Hc1 | connector | 1 | 9655 | 10071 |
| YP_009225695.1 | NC_029097_p30 | DEAD box helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 26888 | 28537 |
| YP_009225716.1 | NC_029097_p51 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | 1 | 39880 | 40467 |
| YP_009225668.1 | NC_029097_p3 | hypothetical protein | phrog_33202 | unknown function | unknown function | 1 | 908 | 1006 |
| YP_009225712.1 | NC_029097_p47 | hypothetical protein | phrog_31936 | unknown function | unknown function | 1 | 37845 | 38015 |
| YP_009225715.1 | NC_029097_p50 | hypothetical protein | phrog_29760 | unknown function | unknown function | 1 | 39650 | 39883 |
| YP_009225686.1 | NC_029097_p21 | tapemeasure | phrog_3336 | tail length tape measure protein | tail | 1 | 14026 | 17184 |
| YP_009225672.1 | NC_029097_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1990 | 3603 |
| YP_009225666.1 | NC_029097_p1 | hypothetical protein | phrog_36946 | unknown function | unknown function | 1 | 1 | 258 |
| YP_009225678.1 | NC_029097_p13 | hypothetical protein | phrog_28344 | unknown function | unknown function | 1 | 8559 | 9128 |
| YP_009225682.1 | NC_029097_p17 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 10535 | 12748 |
| YP_009225683.1 | NC_029097_p18 | tail chaperonin | phrog_313 | Tail assembly chaperone | tail | 1 | 12834 | 13253 |
| YP_009225677.1 | NC_029097_p12 | hypothetical protein | phrog_9062 | unknown function | unknown function | 1 | 8064 | 8498 |
| YP_009225684.1 | NC_029097_p19 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 13271 | 13639 |
| YP_009225687.1 | NC_029097_p22 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 17177 | 18904 |
| YP_009225675.1 | NC_029097_p10 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6280 | 6999 |
| YP_009225708.1 | NC_029097_p43 | hypothetical protein | phrog_38604 | unknown function | unknown function | 1 | 36883 | 37104 |
| YP_009225671.1 | NC_029097_p6 | terminase small subunit | phrog_33410 | terminase small subunit | head and packaging | 1 | 1413 | 2009 |
| YP_009225720.1 | NC_029097_p55 | hypothetical protein | phrog_34105 | unknown function | unknown function | 1 | 41703 | 42065 |
| YP_009225713.1 | NC_029097_p48 | HTH DNA binding protein | phrog_31496 | transcriptional regulator | transcription regulation | 1 | 38012 | 38644 |
| YP_009225700.1 | NC_029097_p35 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 31603 | 32115 |
| YP_009225698.1 | NC_029097_p33 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30004 | 30822 |
| YP_009225679.1 | NC_029097_p14 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9141 | 9653 |
| YP_009225691.1 | NC_029097_p26 | tail protein | phrog_1101 | tail protein | tail | 1 | 20124 | 22391 |
| YP_009225670.1 | NC_029097_p5 | hypothetical protein | phrog_37499 | unknown function | unknown function | 1 | 1204 | 1356 |
| YP_009225692.1 | NC_029097_p27 | hypothetical protein | phrog_19311 | unknown function | unknown function | 1 | 22393 | 23604 |
| YP_009225673.1 | NC_029097_p8 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3617 | 5188 |
| YP_009225704.1 | NC_029097_p39 | hypothetical protein | phrog_34033 | unknown function | unknown function | 1 | 35465 | 35611 |
| YP_009225702.1 | NC_029097_p37 | replicative primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 32757 | 35069 |
| YP_009225688.1 | NC_029097_p23 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 18901 | 19689 |
| YP_009225669.1 | NC_029097_p4 | hypothetical protein | phrog_34183 | unknown function | unknown function | 1 | 993 | 1226 |
| YP_009225725.1 | NC_029097_p60 | hypothetical protein | phrog_32365 | unknown function | unknown function | 1 | 43367 | 43525 |
| YP_009225703.1 | NC_029097_p38 | hypothetical protein | phrog_9154 | unknown function | unknown function | 1 | 35041 | 35385 |
| YP_009225710.1 | NC_029097_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37391 | 37582 |
| YP_009225722.1 | NC_029097_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42400 | 42654 |
| YP_009225697.1 | NC_029097_p32 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 29449 | 29946 |
| YP_009225711.1 | NC_029097_p46 | hypothetical protein | phrog_29142 | unknown function | unknown function | 1 | 37579 | 37848 |
| YP_009225717.1 | NC_029097_p52 | hypothetical protein | phrog_29405 | unknown function | unknown function | 1 | 40464 | 40907 |
| YP_009225706.1 | NC_029097_p41 | hypothetical protein | phrog_38097 | unknown function | unknown function | 1 | 36367 | 36618 |
| YP_009225714.1 | NC_029097_p49 | hypothetical protein | phrog_29311 | unknown function | unknown function | 1 | 38949 | 39653 |
| YP_009225667.1 | NC_029097_p2 | peptidase | phrog_17373 | peptidase | other | 1 | 255 | 911 |
| YP_009225718.1 | NC_029097_p53 | VRR endonuclease | phrog_824 | unknown function | unknown function | 1 | 40904 | 41404 |
| YP_009225694.1 | NC_029097_p29 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 25647 | 26873 |
| YP_009225723.1 | NC_029097_p58 | hypothetical protein | phrog_18992 | unknown function | unknown function | 1 | 42742 | 42966 |
| YP_009225707.1 | NC_029097_p42 | hypothetical protein | phrog_37117 | unknown function | unknown function | 1 | 36668 | 36883 |
| YP_009225705.1 | NC_029097_p40 | hypothetical protein | phrog_30401 | unknown function | unknown function | 1 | 35624 | 36331 |
| YP_009225699.1 | NC_029097_p34 | recombinase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 30842 | 31525 |
| YP_009225709.1 | NC_029097_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37186 | 37386 |
| YP_009225685.1 | NC_029097_p20 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 13587 | 14021 |
| YP_009225676.1 | NC_029097_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7018 | 7998 |
| YP_009225689.1 | NC_029097_p24 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 19700 | 19921 |
| YP_009225719.1 | NC_029097_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 41401 | 41706 |
| YP_009225674.1 | NC_029097_p9 | head morphogenesis | phrog_241 | head morphogenesis | head and packaging | 1 | 5185 | 6234 |
| YP_009225721.1 | NC_029097_p56 | hypothetical protein | phrog_29030 | unknown function | unknown function | 1 | 42062 | 42301 |
| YP_009225681.1 | NC_029097_p16 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 10073 | 10516 |
| YP_009225724.1 | NC_029097_p59 | hypothetical protein | phrog_9241 | unknown function | unknown function | 1 | 42979 | 43380 |
| YP_009225693.1 | NC_029097_p28 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 23601 | 25637 |