Genomic map of Pseudomonas phage YH30 (NC_029101)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029101
Definition
Pseudomonas phage YH30, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Litunavirus; unclassified Litunavirus.
DB of origin
REFSEQ
Length
72192
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
54.91
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009226169.1 NC_029101_p73 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism -1 61079 62308
YP_009226141.1 NC_029101_p45 single-stranded DNA-binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 36362 37108
YP_009226115.1 NC_029101_p19 hypothetical protein phrog_10651 unknown function unknown function -1 6851 7111
YP_009226182.1 NC_029101_p86 hypothetical protein phrog_8585 unknown function unknown function -1 71601 71903
YP_009226131.1 NC_029101_p35 lytic tail fiber phrog_6467 unknown function unknown function 1 21146 22711
YP_009226138.1 NC_029101_p42 DNA packaging B protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 35005 35541
YP_009226107.1 NC_029101_p11 wall-associated receptor kinase-like 20-like protein phrog_2614 unknown function unknown function -1 3271 3579
YP_009226132.1 NC_029101_p36 virion assoviated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism 1 22712 32908
YP_009226112.1 NC_029101_p16 ph domain protein phrog_6483 unknown function unknown function -1 4968 5222
YP_009226152.1 NC_029101_p56 hypothetical protein singleton unknown function unknown function 1 48305 48397
YP_009226149.1 NC_029101_p53 hypothetical protein phrog_3370 unknown function unknown function 1 43893 44564
YP_009226159.1 NC_029101_p63 rIIB-like protein phrog_2886 RIIB lysis inhibitor lysis -1 50956 52734
YP_009226123.1 NC_029101_p27 poly(3-hydroxybutyrate) depolymerase phrog_1216 portal protein head and packaging 1 11716 13896
YP_009226154.1 NC_029101_p58 tail assembly protein phrog_312 Rz-like spanin lysis 1 48915 49427
YP_009226110.1 NC_029101_p14 hypothetical protein phrog_3968 unknown function unknown function -1 4073 4315
YP_009226128.1 NC_029101_p32 structural protein phrog_2050 virion structural protein head and packaging 1 17454 18419
YP_009226127.1 NC_029101_p31 hypothetical protein phrog_2130 unknown function unknown function 1 16785 17450
YP_009226177.1 NC_029101_p81 hypothetical protein phrog_7111 unknown function unknown function -1 67368 67994
YP_009226166.1 NC_029101_p70 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 56681 59296
YP_009226113.1 NC_029101_p17 D-alanyl-D-alanine dipeptidase phrog_8657 unknown function unknown function -1 5686 6303
YP_009226101.1 NC_029101_p5 hypothetical protein phrog_8570 unknown function unknown function -1 1831 2016
YP_009226167.1 NC_029101_p71 hypothetical protein phrog_7095 unknown function unknown function -1 59296 59823
YP_009226109.1 NC_029101_p13 transcriptional regulator phrog_3968 unknown function unknown function -1 3834 4076
YP_009226130.1 NC_029101_p34 hypothetical protein phrog_2646 unknown function unknown function 1 20700 21146
YP_009226160.1 NC_029101_p64 rIIA-like protein phrog_2979 RIIA lysis inhibitor lysis -1 52746 55265
YP_009226156.1 NC_029101_p60 HNH endonuclease phrog_8307 unknown function unknown function -1 50040 50231
YP_009226124.1 NC_029101_p28 endonuclease III phrog_2346 unknown function unknown function 1 13966 14304
YP_009226129.1 NC_029101_p33 hypothetical protein phrog_2220 unknown function unknown function 1 18476 20698
YP_009226162.1 NC_029101_p66 hypothetical protein phrog_8620 unknown function unknown function -1 55457 55855
YP_009226147.1 NC_029101_p51 tail fiber protein J phrog_496 tail fiber protein tail 1 42311 43600
YP_009226121.1 NC_029101_p25 ABC transporter-like protein phrog_8880 unknown function unknown function -1 10959 11258
YP_009226116.1 NC_029101_p20 hypothetical protein phrog_8800 unknown function unknown function -1 7108 7320
YP_009226145.1 NC_029101_p49 hypothetical protein phrog_2452 unknown function unknown function -1 41113 41400
YP_009226153.1 NC_029101_p57 lysozyme phrog_3108 unknown function unknown function 1 48394 48918
YP_009226170.1 NC_029101_p74 ATPase phrog_1297 ATPase other -1 62838 63908
YP_009226165.1 NC_029101_p69 4Fe-4S ferredoxin phrog_12945 ferredoxin moron, auxiliary metabolic gene and host takeover -1 56460 56684
YP_009226111.1 NC_029101_p15 leucyl-tRNA synthetase phrog_7624 unknown function unknown function -1 4334 4525
YP_009226122.1 NC_029101_p26 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 11262 11648
YP_009226137.1 NC_029101_p41 hypothetical protein phrog_7564 unknown function unknown function -1 34556 34993
YP_009226164.1 NC_029101_p68 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 56030 56440
YP_009226172.1 NC_029101_p76 hypothetical protein phrog_5534 unknown function unknown function -1 64179 65012
YP_009226120.1 NC_029101_p24 tail protein phrog_2125 virion structural protein head and packaging 1 10192 10926
YP_009226125.1 NC_029101_p29 hypothetical protein phrog_2120 tail length tape measure protein tail 1 14304 15494
YP_009226144.1 NC_029101_p48 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism -1 40101 41111
YP_009226106.1 NC_029101_p10 hypothetical protein singleton unknown function unknown function -1 2991 3200
YP_009226097.1 NC_029101_p1 transcriptional regulator phrog_7756 unknown function unknown function -1 319 573
YP_009226158.1 NC_029101_p62 hypothetical protein phrog_7722 unknown function unknown function -1 50682 50906
YP_009226099.1 NC_029101_p3 hypothetical protein phrog_8775 unknown function unknown function -1 971 1210
YP_009226134.1 NC_029101_p38 dUTP diphosphatase phrog_7891 unknown function unknown function -1 33137 33454
YP_009226119.1 NC_029101_p23 terminase large subunit phrog_38 terminase large subunit head and packaging 1 8543 10195
YP_009226133.1 NC_029101_p37 transmembrane protein phrog_8152 unknown function unknown function -1 32924 33127
YP_009226176.1 NC_029101_p80 hypothetical protein phrog_8613 unknown function unknown function -1 66817 67371
YP_009226126.1 NC_029101_p30 major capsid protein phrog_1357 major head protein head and packaging 1 15529 16728
YP_009226142.1 NC_029101_p46 ATP/GTP-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 37135 37869
YP_009226143.1 NC_029101_p47 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism -1 37918 40086
YP_009226157.1 NC_029101_p61 hypothetical protein phrog_18580 unknown function unknown function -1 50281 50481
YP_009226161.1 NC_029101_p65 HNH endonuclease phrog_10495 HNH endonuclease DNA, RNA and nucleotide metabolism -1 55269 55460
YP_009226108.1 NC_029101_p12 hypothetical protein phrog_7875 unknown function unknown function -1 3583 3834
YP_009226135.1 NC_029101_p39 phospholipid-transporting ATPase 1 phrog_8394 unknown function unknown function -1 33451 33687
YP_009226151.1 NC_029101_p55 structural protein phrog_2398 unknown function unknown function 1 47848 48300
YP_009226102.1 NC_029101_p6 hypothetical protein phrog_8895 unknown function unknown function -1 2088 2309
YP_009226150.1 NC_029101_p54 tail fiber protein phrog_7697 tail fiber protein tail 1 44603 47848
YP_009226168.1 NC_029101_p72 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism -1 59823 60989
YP_009226118.1 NC_029101_p22 hypothetical protein phrog_2109 unknown function unknown function 1 7818 8543
YP_009226174.1 NC_029101_p78 hypothetical protein phrog_8374 unknown function unknown function -1 65721 66236
YP_009226139.1 NC_029101_p43 hypothetical protein phrog_3934 unknown function unknown function -1 35553 35996
YP_009226100.1 NC_029101_p4 toxin TX1 phrog_6271 toxin moron, auxiliary metabolic gene and host takeover -1 1449 1739
YP_009226098.1 NC_029101_p2 hypothetical protein phrog_2072 unknown function unknown function -1 570 971
YP_009226103.1 NC_029101_p7 hypothetical protein phrog_8334 unknown function unknown function -1 2306 2539
YP_009226178.1 NC_029101_p82 hypothetical protein phrog_6140 unknown function unknown function -1 67998 68222
YP_009226104.1 NC_029101_p8 hypothetical protein phrog_8885 unknown function unknown function -1 2536 2754
YP_009226148.1 NC_029101_p52 hypothetical protein phrog_4047 unknown function unknown function 1 43597 43896
YP_009226114.1 NC_029101_p18 hypothetical protein singleton unknown function unknown function -1 6552 6761
YP_009226175.1 NC_029101_p79 hypothetical protein phrog_8451 unknown function unknown function -1 66233 66817
YP_009226117.1 NC_029101_p21 hypothetical protein phrog_9047 unknown function unknown function -1 7320 7751
YP_009226179.1 NC_029101_p83 RNA polymerase large subunit phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism -1 68545 69786
YP_009226146.1 NC_029101_p50 hypothetical protein phrog_3360 unknown function unknown function -1 41493 41918
YP_009226173.1 NC_029101_p77 hypothetical protein phrog_12464 unknown function unknown function -1 65500 65724
YP_009226163.1 NC_029101_p67 alpha/beta hydrolase phrog_10189 unknown function unknown function -1 55858 55998
YP_009226140.1 NC_029101_p44 hypothetical protein phrog_6026 unknown function unknown function -1 35993 36358
YP_009226155.1 NC_029101_p59 hypothetical protein phrog_8796 unknown function unknown function -1 49490 50029
YP_009226105.1 NC_029101_p9 hypothetical protein phrog_8477 unknown function unknown function -1 2784 2987
YP_009226171.1 NC_029101_p75 hypothetical protein phrog_4781 unknown function unknown function -1 63940 64182
YP_009226136.1 NC_029101_p40 hypothetical protein phrog_7212 unknown function unknown function -1 34094 34498
YP_009226181.1 NC_029101_p85 RNA polymerase small subunit phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism -1 70657 71589
YP_009226180.1 NC_029101_p84 hypothetical protein phrog_8597 unknown function unknown function -1 70384 70644