| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029104 |
Definition |
Brevibacillus phage Jimmer1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Jimmervirus; unclassified Jimmervirus. |
DB of origin |
REFSEQ |
Length |
54312 |
Host Name |
Brevibacillus laterosporus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
103 |
%GC |
38.1 |
Number of singletons |
0 |
Number of paralogs |
9 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009226340.1 | NC_029104_p30 | phage-like element PBSX protein | phrog_521 | tail protein | tail | 1 | 20734 | 21408 |
| YP_009226402.1 | NC_029104_p92 | hypothetical protein | phrog_8017 | unknown function | unknown function | 1 | 50016 | 50309 |
| YP_009226382.1 | NC_029104_p72 | hypothetical protein | phrog_14271 | unknown function | unknown function | 1 | 40623 | 40880 |
| YP_009226315.1 | NC_029104_p5 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 4057 | 5100 |
| YP_009226400.1 | NC_029104_p90 | hypothetical protein | phrog_13474 | unknown function | unknown function | 1 | 49106 | 49327 |
| YP_009226329.1 | NC_029104_p19 | prophage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 12580 | 13392 |
| YP_009226364.1 | NC_029104_p54 | hypothetical protein | phrog_20308 | unknown function | unknown function | -1 | 35244 | 35465 |
| YP_009226346.1 | NC_029104_p36 | hypothetical protein | phrog_1625 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 23645 | 23911 |
| YP_009226403.1 | NC_029104_p93 | hypothetical protein | phrog_15356 | unknown function | unknown function | 1 | 50316 | 50498 |
| YP_009226362.1 | NC_029104_p52 | hypothetical protein | phrog_21873 | unknown function | unknown function | 1 | 33946 | 34593 |
| YP_009226399.1 | NC_029104_p89 | site-specific DNA methylase | phrog_56 | DNA methyltransferase | other | 1 | 48467 | 49057 |
| YP_009226321.1 | NC_029104_p11 | head joining protein | phrog_615 | head-tail adaptor | connector | 1 | 7826 | 8188 |
| YP_009226360.1 | NC_029104_p50 | hypothetical protein | phrog_9488 | unknown function | unknown function | 1 | 32927 | 33010 |
| YP_009226370.1 | NC_029104_p60 | hypothetical protein | phrog_25353 | unknown function | unknown function | -1 | 37421 | 37645 |
| YP_009226386.1 | NC_029104_p76 | hypothetical protein | phrog_7370 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42401 | 42748 |
| YP_009226330.1 | NC_029104_p20 | hypothetical protein | phrog_18892 | unknown function | unknown function | 1 | 13519 | 13848 |
| YP_009226337.1 | NC_029104_p27 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 18920 | 19279 |
| YP_009226372.1 | NC_029104_p62 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 38124 | 38330 |
| YP_009226375.1 | NC_029104_p65 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 38852 | 39004 |
| YP_009226343.1 | NC_029104_p33 | hypothetical protein | phrog_16708 | unknown function | unknown function | 1 | 21977 | 23077 |
| YP_009226413.1 | NC_029104_p103 | hypothetical protein | phrog_15039 | unknown function | unknown function | 1 | 54042 | 54296 |
| YP_009226387.1 | NC_029104_p77 | prophage replication protein O | phrog_16826 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 42762 | 43787 |
| YP_009226341.1 | NC_029104_p31 | hypothetical protein | phrog_6293 | unknown function | unknown function | 1 | 21395 | 21673 |
| YP_009226317.1 | NC_029104_p7 | hypothetical protein | phrog_909 | major head protein | head and packaging | 1 | 5827 | 6198 |
| YP_009226327.1 | NC_029104_p17 | DNA binding/transcriptional regulator | phrog_38620 | transcriptional regulator | transcription regulation | -1 | 11653 | 12177 |
| YP_009226357.1 | NC_029104_p47 | hypothetical protein | phrog_18981 | unknown function | unknown function | 1 | 30444 | 30626 |
| YP_009226339.1 | NC_029104_p29 | baseplate J family protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19671 | 20741 |
| YP_009226335.1 | NC_029104_p25 | LysM domain-containing protein | phrog_380 | endolysin | lysis | 1 | 17255 | 17932 |
| YP_009226388.1 | NC_029104_p78 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 43791 | 44717 |
| YP_009226323.1 | NC_029104_p13 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 8681 | 9124 |
| YP_009226384.1 | NC_029104_p74 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41373 | 41981 |
| YP_009226409.1 | NC_029104_p99 | hypothetical protein | phrog_13979 | unknown function | unknown function | 1 | 52335 | 52604 |
| YP_009226350.1 | NC_029104_p40 | hypothetical protein | phrog_21480 | unknown function | unknown function | 1 | 24881 | 25852 |
| YP_009226352.1 | NC_029104_p42 | hypothetical protein | phrog_3677 | protease | other | 1 | 26234 | 27376 |
| YP_009226398.1 | NC_029104_p88 | hypothetical protein | phrog_16864 | unknown function | unknown function | 1 | 48384 | 48467 |
| YP_009226385.1 | NC_029104_p75 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41974 | 42387 |
| YP_009226383.1 | NC_029104_p73 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 40877 | 41362 |
| YP_009226406.1 | NC_029104_p96 | hypothetical protein | phrog_14524 | unknown function | unknown function | 1 | 51129 | 51782 |
| YP_009226393.1 | NC_029104_p83 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 46390 | 46800 |
| YP_009226349.1 | NC_029104_p39 | hypothetical protein | phrog_19339 | unknown function | unknown function | 1 | 24753 | 24884 |
| YP_009226358.1 | NC_029104_p48 | hypothetical protein | phrog_3352 | unknown function | unknown function | 1 | 30755 | 31093 |
| YP_009226365.1 | NC_029104_p55 | hypothetical protein | phrog_23159 | unknown function | unknown function | 1 | 35460 | 35573 |
| YP_009226326.1 | NC_029104_p16 | core tail protein | phrog_365 | tail protein | tail | 1 | 10600 | 11064 |
| YP_009226325.1 | NC_029104_p15 | tail sheath protein | phrog_279 | tail sheath | tail | 1 | 9286 | 10599 |
| YP_009226390.1 | NC_029104_p80 | anti-repressor | phrog_373 | anti-repressor | transcription regulation | 1 | 44992 | 45726 |
| YP_009226380.1 | NC_029104_p70 | hypothetical protein | phrog_12138 | unknown function | unknown function | 1 | 40169 | 40342 |
| YP_009226351.1 | NC_029104_p41 | hypothetical protein | phrog_21463 | unknown function | unknown function | 1 | 25872 | 26030 |
| YP_009226374.1 | NC_029104_p64 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | -1 | 38568 | 38738 |
| YP_009226319.1 | NC_029104_p9 | hypothetical protein | phrog_20254 | unknown function | unknown function | 1 | 7309 | 7473 |
| YP_009226336.1 | NC_029104_p26 | late control D protein | phrog_400 | tail protein | tail | 1 | 17947 | 18915 |
| YP_009226371.1 | NC_029104_p61 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 37638 | 37958 |
| YP_009226314.1 | NC_029104_p4 | portal protein, SPP1 family | phrog_64 | portal protein | head and packaging | 1 | 2612 | 4060 |
| YP_009226347.1 | NC_029104_p37 | hypothetical protein | phrog_14745 | unknown function | unknown function | 1 | 23914 | 24186 |
| YP_009226377.1 | NC_029104_p67 | hypothetical protein | phrog_15906 | unknown function | unknown function | 1 | 39523 | 39708 |
| YP_009226316.1 | NC_029104_p6 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5175 | 5810 |
| YP_009226412.1 | NC_029104_p102 | hypothetical protein | phrog_15598 | unknown function | unknown function | 1 | 53688 | 54008 |
| YP_009226324.1 | NC_029104_p14 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 9108 | 9284 |
| YP_009226376.1 | NC_029104_p66 | transcriptional repressor | phrog_8 | transcriptional regulator | transcription regulation | 1 | 39114 | 39539 |
| YP_009226379.1 | NC_029104_p69 | hypothetical protein | phrog_14057 | unknown function | unknown function | 1 | 39967 | 40179 |
| YP_009226395.1 | NC_029104_p85 | hypothetical protein | phrog_3356 | transposase | integration and excision | 1 | 47349 | 47624 |
| YP_009226394.1 | NC_029104_p84 | recombination protein U | phrog_843 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46818 | 47348 |
| YP_009226313.1 | NC_029104_p3 | hypothetical protein | phrog_19483 | unknown function | unknown function | -1 | 1786 | 2523 |
| YP_009226353.1 | NC_029104_p43 | hypothetical protein | phrog_19642 | unknown function | unknown function | 1 | 27333 | 27527 |
| YP_009226320.1 | NC_029104_p10 | DNA packaging protein | phrog_132 | head-tail adaptor | connector | 1 | 7473 | 7832 |
| YP_009226334.1 | NC_029104_p24 | tail length tape measure protein | phrog_1068 | tail length tape measure protein | tail | 1 | 15229 | 17262 |
| YP_009226397.1 | NC_029104_p87 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 47746 | 48384 |
| YP_009226401.1 | NC_029104_p91 | hypothetical protein | phrog_3205 | unknown function | unknown function | 1 | 49377 | 49991 |
| YP_009226373.1 | NC_029104_p63 | hypothetical protein | phrog_228 | Arc-like repressor | transcription regulation | -1 | 38352 | 38525 |
| YP_009226405.1 | NC_029104_p95 | hypothetical protein | phrog_17992 | unknown function | unknown function | 1 | 50798 | 51097 |
| YP_009226391.1 | NC_029104_p81 | hypothetical protein | phrog_16440 | unknown function | unknown function | 1 | 45730 | 45939 |
| YP_009226331.1 | NC_029104_p21 | phage xKdn-like protein | phrog_389 | tail protein XkdN-like | tail | 1 | 13977 | 14387 |
| YP_009226389.1 | NC_029104_p79 | hypothetical protein | phrog_14454 | unknown function | unknown function | 1 | 44701 | 44979 |
| YP_009226344.1 | NC_029104_p34 | hypothetical protein | phrog_17807 | unknown function | unknown function | 1 | 23092 | 23439 |
| YP_009226354.1 | NC_029104_p44 | hypothetical protein | phrog_21903 | unknown function | unknown function | 1 | 27764 | 27886 |
| YP_009226345.1 | NC_029104_p35 | hypothetical protein | phrog_1382 | unknown function | unknown function | 1 | 23439 | 23552 |
| YP_009226318.1 | NC_029104_p8 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 6215 | 7255 |
| YP_009226359.1 | NC_029104_p49 | recombinase | phrog_95 | integrase | integration and excision | -1 | 31203 | 32774 |
| YP_009226367.1 | NC_029104_p57 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | 1 | 35933 | 36298 |
| YP_009226408.1 | NC_029104_p98 | hypothetical protein | phrog_14648 | unknown function | unknown function | 1 | 52114 | 52356 |
| YP_009226392.1 | NC_029104_p82 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 45908 | 46402 |
| YP_009226355.1 | NC_029104_p45 | kelch repeat protein | phrog_12615 | unknown function | unknown function | -1 | 27931 | 29184 |
| YP_009226363.1 | NC_029104_p53 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | 1 | 34822 | 35184 |
| YP_009226342.1 | NC_029104_p32 | hypothetical protein | phrog_15651 | tail fiber protein | tail | 1 | 21677 | 21967 |
| YP_009226381.1 | NC_029104_p71 | hypothetical protein | phrog_13567 | unknown function | unknown function | 1 | 40391 | 40639 |
| YP_009226333.1 | NC_029104_p23 | hypothetical protein | phrog_20110 | unknown function | unknown function | 1 | 14614 | 15174 |
| YP_009226369.1 | NC_029104_p59 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 37125 | 37367 |
| YP_009226361.1 | NC_029104_p51 | hypothetical protein | phrog_21204 | unknown function | unknown function | 1 | 33302 | 33883 |
| YP_009226332.1 | NC_029104_p22 | hypothetical protein | phrog_10943 | unknown function | unknown function | 1 | 14459 | 14557 |
| YP_009226404.1 | NC_029104_p94 | hypothetical protein | phrog_14222 | unknown function | unknown function | 1 | 50479 | 50814 |
| YP_009226378.1 | NC_029104_p68 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 39705 | 39953 |
| YP_009226407.1 | NC_029104_p97 | hypothetical protein | phrog_20140 | unknown function | unknown function | 1 | 51779 | 52102 |
| YP_009226396.1 | NC_029104_p86 | hypothetical protein | phrog_15349 | unknown function | unknown function | 1 | 47652 | 47756 |
| YP_009226368.1 | NC_029104_p58 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 36336 | 36968 |
| YP_009226322.1 | NC_029104_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8188 | 8694 |
| YP_009226366.1 | NC_029104_p56 | hypothetical protein | phrog_15184 | unknown function | unknown function | 1 | 35699 | 35911 |
| YP_009226411.1 | NC_029104_p101 | hypothetical protein | phrog_1048 | unknown function | unknown function | 1 | 53277 | 53615 |
| YP_009226311.1 | NC_029104_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 26 | 463 |
| YP_009226312.1 | NC_029104_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 450 | 1706 |
| YP_009226338.1 | NC_029104_p28 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 19276 | 19674 |
| YP_009226410.1 | NC_029104_p100 | RNA polymerase sigma 24 | phrog_1190 | RNA polymerase sigma factor | transcription regulation | 1 | 52695 | 53204 |
| YP_009226348.1 | NC_029104_p38 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | phrog_3513 | endolysin | lysis | 1 | 24161 | 24784 |
| YP_009226328.1 | NC_029104_p18 | DNA binding/transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 12334 | 12567 |
| YP_009226356.1 | NC_029104_p46 | hypothetical protein | phrog_20411 | unknown function | unknown function | -1 | 29668 | 30333 |