Genomic map of Brevibacillus phage Jimmer1 (NC_029104)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_029104
Definition
Brevibacillus phage Jimmer1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Jimmervirus; unclassified Jimmervirus.
DB of origin
REFSEQ
Length
54312
Host Name
Brevibacillus laterosporus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
103
%GC
38.1
Number of singletons
0
Number of paralogs
9

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009226340.1 NC_029104_p30 phage-like element PBSX protein phrog_521 tail protein tail 1 20734 21408
YP_009226402.1 NC_029104_p92 hypothetical protein phrog_8017 unknown function unknown function 1 50016 50309
YP_009226382.1 NC_029104_p72 hypothetical protein phrog_14271 unknown function unknown function 1 40623 40880
YP_009226315.1 NC_029104_p5 head morphogenesis protein phrog_115 minor head protein head and packaging 1 4057 5100
YP_009226400.1 NC_029104_p90 hypothetical protein phrog_13474 unknown function unknown function 1 49106 49327
YP_009226329.1 NC_029104_p19 prophage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 12580 13392
YP_009226364.1 NC_029104_p54 hypothetical protein phrog_20308 unknown function unknown function -1 35244 35465
YP_009226346.1 NC_029104_p36 hypothetical protein phrog_1625 involved in bacteriocin production or immunity moron, auxiliary metabolic gene and host takeover 1 23645 23911
YP_009226403.1 NC_029104_p93 hypothetical protein phrog_15356 unknown function unknown function 1 50316 50498
YP_009226362.1 NC_029104_p52 hypothetical protein phrog_21873 unknown function unknown function 1 33946 34593
YP_009226399.1 NC_029104_p89 site-specific DNA methylase phrog_56 DNA methyltransferase other 1 48467 49057
YP_009226321.1 NC_029104_p11 head joining protein phrog_615 head-tail adaptor connector 1 7826 8188
YP_009226360.1 NC_029104_p50 hypothetical protein phrog_9488 unknown function unknown function 1 32927 33010
YP_009226370.1 NC_029104_p60 hypothetical protein phrog_25353 unknown function unknown function -1 37421 37645
YP_009226386.1 NC_029104_p76 hypothetical protein phrog_7370 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42401 42748
YP_009226330.1 NC_029104_p20 hypothetical protein phrog_18892 unknown function unknown function 1 13519 13848
YP_009226337.1 NC_029104_p27 hypothetical protein phrog_579 unknown function unknown function 1 18920 19279
YP_009226372.1 NC_029104_p62 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 38124 38330
YP_009226375.1 NC_029104_p65 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 38852 39004
YP_009226343.1 NC_029104_p33 hypothetical protein phrog_16708 unknown function unknown function 1 21977 23077
YP_009226413.1 NC_029104_p103 hypothetical protein phrog_15039 unknown function unknown function 1 54042 54296
YP_009226387.1 NC_029104_p77 prophage replication protein O phrog_16826 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 42762 43787
YP_009226341.1 NC_029104_p31 hypothetical protein phrog_6293 unknown function unknown function 1 21395 21673
YP_009226317.1 NC_029104_p7 hypothetical protein phrog_909 major head protein head and packaging 1 5827 6198
YP_009226327.1 NC_029104_p17 DNA binding/transcriptional regulator phrog_38620 transcriptional regulator transcription regulation -1 11653 12177
YP_009226357.1 NC_029104_p47 hypothetical protein phrog_18981 unknown function unknown function 1 30444 30626
YP_009226339.1 NC_029104_p29 baseplate J family protein phrog_6 baseplate wedge subunit tail 1 19671 20741
YP_009226335.1 NC_029104_p25 LysM domain-containing protein phrog_380 endolysin lysis 1 17255 17932
YP_009226388.1 NC_029104_p78 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 43791 44717
YP_009226323.1 NC_029104_p13 hypothetical protein phrog_525 unknown function unknown function 1 8681 9124
YP_009226384.1 NC_029104_p74 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 41373 41981
YP_009226409.1 NC_029104_p99 hypothetical protein phrog_13979 unknown function unknown function 1 52335 52604
YP_009226350.1 NC_029104_p40 hypothetical protein phrog_21480 unknown function unknown function 1 24881 25852
YP_009226352.1 NC_029104_p42 hypothetical protein phrog_3677 protease other 1 26234 27376
YP_009226398.1 NC_029104_p88 hypothetical protein phrog_16864 unknown function unknown function 1 48384 48467
YP_009226385.1 NC_029104_p75 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 41974 42387
YP_009226383.1 NC_029104_p73 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 40877 41362
YP_009226406.1 NC_029104_p96 hypothetical protein phrog_14524 unknown function unknown function 1 51129 51782
YP_009226393.1 NC_029104_p83 hypothetical protein phrog_98 unknown function unknown function 1 46390 46800
YP_009226349.1 NC_029104_p39 hypothetical protein phrog_19339 unknown function unknown function 1 24753 24884
YP_009226358.1 NC_029104_p48 hypothetical protein phrog_3352 unknown function unknown function 1 30755 31093
YP_009226365.1 NC_029104_p55 hypothetical protein phrog_23159 unknown function unknown function 1 35460 35573
YP_009226326.1 NC_029104_p16 core tail protein phrog_365 tail protein tail 1 10600 11064
YP_009226325.1 NC_029104_p15 tail sheath protein phrog_279 tail sheath tail 1 9286 10599
YP_009226390.1 NC_029104_p80 anti-repressor phrog_373 anti-repressor transcription regulation 1 44992 45726
YP_009226380.1 NC_029104_p70 hypothetical protein phrog_12138 unknown function unknown function 1 40169 40342
YP_009226351.1 NC_029104_p41 hypothetical protein phrog_21463 unknown function unknown function 1 25872 26030
YP_009226374.1 NC_029104_p64 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 38568 38738
YP_009226319.1 NC_029104_p9 hypothetical protein phrog_20254 unknown function unknown function 1 7309 7473
YP_009226336.1 NC_029104_p26 late control D protein phrog_400 tail protein tail 1 17947 18915
YP_009226371.1 NC_029104_p61 transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 37638 37958
YP_009226314.1 NC_029104_p4 portal protein, SPP1 family phrog_64 portal protein head and packaging 1 2612 4060
YP_009226347.1 NC_029104_p37 hypothetical protein phrog_14745 unknown function unknown function 1 23914 24186
YP_009226377.1 NC_029104_p67 hypothetical protein phrog_15906 unknown function unknown function 1 39523 39708
YP_009226316.1 NC_029104_p6 minor structural protein phrog_194 head scaffolding protein head and packaging 1 5175 5810
YP_009226412.1 NC_029104_p102 hypothetical protein phrog_15598 unknown function unknown function 1 53688 54008
YP_009226324.1 NC_029104_p14 hypothetical protein phrog_966 unknown function unknown function 1 9108 9284
YP_009226376.1 NC_029104_p66 transcriptional repressor phrog_8 transcriptional regulator transcription regulation 1 39114 39539
YP_009226379.1 NC_029104_p69 hypothetical protein phrog_14057 unknown function unknown function 1 39967 40179
YP_009226395.1 NC_029104_p85 hypothetical protein phrog_3356 transposase integration and excision 1 47349 47624
YP_009226394.1 NC_029104_p84 recombination protein U phrog_843 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 46818 47348
YP_009226313.1 NC_029104_p3 hypothetical protein phrog_19483 unknown function unknown function -1 1786 2523
YP_009226353.1 NC_029104_p43 hypothetical protein phrog_19642 unknown function unknown function 1 27333 27527
YP_009226320.1 NC_029104_p10 DNA packaging protein phrog_132 head-tail adaptor connector 1 7473 7832
YP_009226334.1 NC_029104_p24 tail length tape measure protein phrog_1068 tail length tape measure protein tail 1 15229 17262
YP_009226397.1 NC_029104_p87 dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 47746 48384
YP_009226401.1 NC_029104_p91 hypothetical protein phrog_3205 unknown function unknown function 1 49377 49991
YP_009226373.1 NC_029104_p63 hypothetical protein phrog_228 Arc-like repressor transcription regulation -1 38352 38525
YP_009226405.1 NC_029104_p95 hypothetical protein phrog_17992 unknown function unknown function 1 50798 51097
YP_009226391.1 NC_029104_p81 hypothetical protein phrog_16440 unknown function unknown function 1 45730 45939
YP_009226331.1 NC_029104_p21 phage xKdn-like protein phrog_389 tail protein XkdN-like tail 1 13977 14387
YP_009226389.1 NC_029104_p79 hypothetical protein phrog_14454 unknown function unknown function 1 44701 44979
YP_009226344.1 NC_029104_p34 hypothetical protein phrog_17807 unknown function unknown function 1 23092 23439
YP_009226354.1 NC_029104_p44 hypothetical protein phrog_21903 unknown function unknown function 1 27764 27886
YP_009226345.1 NC_029104_p35 hypothetical protein phrog_1382 unknown function unknown function 1 23439 23552
YP_009226318.1 NC_029104_p8 major capsid protein phrog_29 major head protein head and packaging 1 6215 7255
YP_009226359.1 NC_029104_p49 recombinase phrog_95 integrase integration and excision -1 31203 32774
YP_009226367.1 NC_029104_p57 transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 35933 36298
YP_009226408.1 NC_029104_p98 hypothetical protein phrog_14648 unknown function unknown function 1 52114 52356
YP_009226392.1 NC_029104_p82 hypothetical protein phrog_98 unknown function unknown function 1 45908 46402
YP_009226355.1 NC_029104_p45 kelch repeat protein phrog_12615 unknown function unknown function -1 27931 29184
YP_009226363.1 NC_029104_p53 transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 34822 35184
YP_009226342.1 NC_029104_p32 hypothetical protein phrog_15651 tail fiber protein tail 1 21677 21967
YP_009226381.1 NC_029104_p71 hypothetical protein phrog_13567 unknown function unknown function 1 40391 40639
YP_009226333.1 NC_029104_p23 hypothetical protein phrog_20110 unknown function unknown function 1 14614 15174
YP_009226369.1 NC_029104_p59 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 37125 37367
YP_009226361.1 NC_029104_p51 hypothetical protein phrog_21204 unknown function unknown function 1 33302 33883
YP_009226332.1 NC_029104_p22 hypothetical protein phrog_10943 unknown function unknown function 1 14459 14557
YP_009226404.1 NC_029104_p94 hypothetical protein phrog_14222 unknown function unknown function 1 50479 50814
YP_009226378.1 NC_029104_p68 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 39705 39953
YP_009226407.1 NC_029104_p97 hypothetical protein phrog_20140 unknown function unknown function 1 51779 52102
YP_009226396.1 NC_029104_p86 hypothetical protein phrog_15349 unknown function unknown function 1 47652 47756
YP_009226368.1 NC_029104_p58 transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 36336 36968
YP_009226322.1 NC_029104_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8188 8694
YP_009226366.1 NC_029104_p56 hypothetical protein phrog_15184 unknown function unknown function 1 35699 35911
YP_009226411.1 NC_029104_p101 hypothetical protein phrog_1048 unknown function unknown function 1 53277 53615
YP_009226311.1 NC_029104_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 26 463
YP_009226312.1 NC_029104_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 450 1706
YP_009226338.1 NC_029104_p28 hypothetical protein phrog_120 baseplate wedge subunit tail 1 19276 19674
YP_009226410.1 NC_029104_p100 RNA polymerase sigma 24 phrog_1190 RNA polymerase sigma factor transcription regulation 1 52695 53204
YP_009226348.1 NC_029104_p38 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase phrog_3513 endolysin lysis 1 24161 24784
YP_009226328.1 NC_029104_p18 DNA binding/transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 12334 12567
YP_009226356.1 NC_029104_p46 hypothetical protein phrog_20411 unknown function unknown function -1 29668 30333