| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_029107 |
Definition |
Ralstonia phage RS138 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41941 |
Host Name |
Ralstonia solanacearum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
65.1 |
Number of singletons |
13 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009226544.1 | NC_029107_p40 | Mu phage uncharacterized protein | phrog_24274 | unknown function | unknown function | 1 | 23126 | 23560 |
| YP_009226510.1 | NC_029107_p6 | integrase | singleton | unknown function | unknown function | 1 | 2593 | 3666 |
| YP_009226554.1 | NC_029107_p50 | hypothetical protein | phrog_3545 | unknown function | unknown function | 1 | 35857 | 37587 |
| YP_009226552.1 | NC_029107_p48 | Tai fiber | phrog_6128 | unknown function | unknown function | 1 | 31032 | 34673 |
| YP_009226508.1 | NC_029107_p4 | transcriptional regulator | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1721 | 2065 |
| YP_009226541.1 | NC_029107_p37 | Mu-like prophage I protein | phrog_328 | head maturation protease | head and packaging | 1 | 20570 | 21622 |
| YP_009226509.1 | NC_029107_p5 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 2091 | 2651 |
| YP_009226524.1 | NC_029107_p20 | hypothetical protein | phrog_31206 | unknown function | unknown function | 1 | 10064 | 10198 |
| YP_009226516.1 | NC_029107_p12 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6515 | 6973 |
| YP_009226536.1 | NC_029107_p32 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 14518 | 16296 |
| YP_009226545.1 | NC_029107_p41 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 23567 | 23983 |
| YP_009226538.1 | NC_029107_p34 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 17958 | 19334 |
| YP_009226506.1 | NC_029107_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 180 | 791 |
| YP_009226522.1 | NC_029107_p18 | phage capsid protein | phrog_846 | unknown function | unknown function | 1 | 9016 | 9522 |
| YP_009226514.1 | NC_029107_p10 | hypothetical protein | phrog_37461 | unknown function | unknown function | 1 | 5617 | 5895 |
| YP_009226535.1 | NC_029107_p31 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 14025 | 14525 |
| YP_009226558.1 | NC_029107_p54 | hypothetical protein | phrog_5348 | unknown function | unknown function | 1 | 40312 | 40773 |
| YP_009226511.1 | NC_029107_p7 | integrase | phrog_310 | transposase | integration and excision | 1 | 3425 | 4840 |
| YP_009226553.1 | NC_029107_p49 | hypothetical protein | phrog_9998 | unknown function | unknown function | 1 | 34689 | 35846 |
| YP_009226559.1 | NC_029107_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41077 | 41463 |
| YP_009226526.1 | NC_029107_p22 | hypothetical protein | phrog_31206 | unknown function | unknown function | 1 | 10747 | 10881 |
| YP_009226529.1 | NC_029107_p25 | DNA transposition protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 11721 | 12164 |
| YP_009226523.1 | NC_029107_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9532 | 9969 |
| YP_009226519.1 | NC_029107_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7492 | 7830 |
| YP_009226542.1 | NC_029107_p38 | bacteriophage protein | phrog_1731 | virion structural protein | head and packaging | 1 | 21667 | 22074 |
| YP_009226547.1 | NC_029107_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24432 | 24623 |
| YP_009226532.1 | NC_029107_p28 | Rz protein | phrog_1403 | Rz-like spanin | lysis | 1 | 12990 | 13586 |
| YP_009226543.1 | NC_029107_p39 | head protein | phrog_371 | major head protein | head and packaging | 1 | 22115 | 23008 |
| YP_009226540.1 | NC_029107_p36 | integron gene cassette protein | singleton | unknown function | unknown function | 1 | 19967 | 20242 |
| YP_009226550.1 | NC_029107_p46 | tail length tape measure protein | singleton | unknown function | unknown function | 1 | 25937 | 30634 |
| YP_009226549.1 | NC_029107_p45 | hypothetical protein | phrog_7608 | unknown function | unknown function | 1 | 25434 | 25790 |
| YP_009226556.1 | NC_029107_p52 | hypothetical protein | phrog_6079 | tail protein | tail | 1 | 37986 | 39866 |
| YP_009226533.1 | NC_029107_p29 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 13576 | 13803 |
| YP_009226521.1 | NC_029107_p17 | hypothetical protein | phrog_38050 | unknown function | unknown function | 1 | 8539 | 8886 |
| YP_009226525.1 | NC_029107_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10202 | 10546 |
| YP_009226555.1 | NC_029107_p51 | hypothetical protein | phrog_3758 | virion structural protein | head and packaging | 1 | 37584 | 37982 |
| YP_009226531.1 | NC_029107_p27 | hypothetical protein | phrog_1322 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 12752 | 12997 |
| YP_009226551.1 | NC_029107_p47 | hypothetical protein | phrog_4408 | unknown function | unknown function | 1 | 30631 | 31035 |
| YP_009226513.1 | NC_029107_p9 | phage DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 5126 | 5620 |
| YP_009226517.1 | NC_029107_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6829 | 7332 |
| YP_009226507.1 | NC_029107_p3 | transcriptional regulator | phrog_3557 | transcriptional regulator | transcription regulation | -1 | 1105 | 1533 |
| YP_009226512.1 | NC_029107_p8 | phage DNA transposition protein | singleton | unknown function | unknown function | 1 | 4857 | 5189 |
| YP_009226505.1 | NC_029107_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15 | 161 |
| YP_009226515.1 | NC_029107_p11 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 6205 | 6525 |
| YP_009226548.1 | NC_029107_p44 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 24663 | 25412 |
| YP_009226537.1 | NC_029107_p33 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 16302 | 17912 |
| YP_009226546.1 | NC_029107_p42 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 24133 | 24456 |
| YP_009226518.1 | NC_029107_p14 | hypothetical protein | phrog_35124 | unknown function | unknown function | 1 | 7332 | 7481 |
| YP_009226557.1 | NC_029107_p53 | hypothetical protein | phrog_5076 | unknown function | unknown function | 1 | 39882 | 40106 |
| YP_009226534.1 | NC_029107_p30 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 13804 | 14025 |
| YP_009226560.1 | NC_029107_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41460 | 41825 |
| YP_009226527.1 | NC_029107_p23 | hypothetical protein | phrog_5671 | unknown function | unknown function | 1 | 10885 | 11322 |
| YP_009226530.1 | NC_029107_p26 | virion protein | phrog_873 | endolysin | head and packaging | 1 | 12315 | 12755 |
| YP_009226520.1 | NC_029107_p16 | hypothetical protein | phrog_2161 | unknown function | unknown function | 1 | 7955 | 8539 |
| YP_009226528.1 | NC_029107_p24 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 11325 | 11717 |
| YP_009226539.1 | NC_029107_p35 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 19291 | 19758 |